data_5K64 # _model_server_result.job_id '_NuhBmSMde_5dqcAPaEnHA' _model_server_result.datetime_utc '2025-03-09 04:03:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":507}' # _entry.id 5K64 # _exptl.entry_id 5K64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.23 _cell.angle_gamma 90 _cell.entry_id 5K64 _cell.length_a 92.72 _cell.length_b 38.86 _cell.length_c 97.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 9 ? 3 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 500 NAG 2 n C NAG 2 C 2 NAG A 501 NAG 2 n C BMA 3 C 3 BMA A 502 BMA 2 n C MAN 4 C 4 MAN A 504 MAN 2 n C MAN 5 C 5 MAN A 503 MAN 3 n D NAG 1 D 1 NAG B 500 NAG 3 n D NAG 2 D 2 NAG B 501 NAG 3 n D BMA 3 D 3 BMA B 502 BMA 3 n D MAN 4 D 4 MAN B 503 MAN 3 n D NAG 5 D 5 NAG B 504 NAG 3 n D MAN 6 D 6 MAN B 506 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 261 1_555 A SG CYS 97 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 143 A CYS 367 1_555 A SG CYS 206 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 37 B CYS 261 1_555 B SG CYS 97 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 143 B CYS 367 1_555 B SG CYS 206 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 73 A ASN 297 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale2 B ND2 ASN 73 B ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 279 n n O1 C6 MES sing 280 n n C2 C3 MES sing 281 n n C2 H21 MES sing 282 n n C2 H22 MES sing 283 n n C3 N4 MES sing 284 n n C3 H31 MES sing 285 n n C3 H32 MES sing 286 n n N4 C5 MES sing 287 n n N4 C7 MES sing 288 n n N4 HN4 MES sing 289 n n C5 C6 MES sing 290 n n C5 H51 MES sing 291 n n C5 H52 MES sing 292 n n C6 H61 MES sing 293 n n C6 H62 MES sing 294 n n C7 C8 MES sing 295 n n C7 H71 MES sing 296 n n C7 H72 MES sing 297 n n C8 S MES sing 298 n n C8 H81 MES sing 299 n n C8 H82 MES sing 300 n n S O1S MES doub 301 n n S O2S MES doub 302 n n S O3S MES sing 303 n n # _atom_sites.entry_id 5K64 _atom_sites.fract_transf_matrix[1][1] 0.010785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000798 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 506 5 GOL GOL . F 5 MES A 1 507 1 MES MES . G 4 GOL B 1 507 3 GOL GOL . H 4 GOL B 1 508 4 GOL GOL . I 6 HOH A 1 601 28 HOH HOH . I 6 HOH A 2 602 38 HOH HOH . I 6 HOH A 3 603 4 HOH HOH . I 6 HOH A 4 604 24 HOH HOH . I 6 HOH A 5 605 32 HOH HOH . I 6 HOH A 6 606 14 HOH HOH . I 6 HOH A 7 607 26 HOH HOH . I 6 HOH A 8 608 2 HOH HOH . I 6 HOH A 9 609 6 HOH HOH . I 6 HOH A 10 610 5 HOH HOH . I 6 HOH A 11 611 22 HOH HOH . I 6 HOH A 12 612 33 HOH HOH . I 6 HOH A 13 613 12 HOH HOH . I 6 HOH A 14 614 46 HOH HOH . I 6 HOH A 15 615 48 HOH HOH . I 6 HOH A 16 616 35 HOH HOH . I 6 HOH A 17 617 34 HOH HOH . I 6 HOH A 18 618 13 HOH HOH . J 6 HOH B 1 601 18 HOH HOH . J 6 HOH B 2 602 27 HOH HOH . J 6 HOH B 3 603 36 HOH HOH . J 6 HOH B 4 604 20 HOH HOH . J 6 HOH B 5 605 17 HOH HOH . J 6 HOH B 6 606 1 HOH HOH . J 6 HOH B 7 607 3 HOH HOH . J 6 HOH B 8 608 10 HOH HOH . J 6 HOH B 9 609 29 HOH HOH . J 6 HOH B 10 610 19 HOH HOH . J 6 HOH B 11 611 45 HOH HOH . J 6 HOH B 12 612 7 HOH HOH . J 6 HOH B 13 613 16 HOH HOH . J 6 HOH B 14 614 42 HOH HOH . J 6 HOH B 15 615 9 HOH HOH . J 6 HOH B 16 616 43 HOH HOH . J 6 HOH B 17 617 21 HOH HOH . J 6 HOH B 18 618 40 HOH HOH . J 6 HOH B 19 619 39 HOH HOH . J 6 HOH B 20 620 8 HOH HOH . J 6 HOH B 21 621 25 HOH HOH . J 6 HOH B 22 622 47 HOH HOH . J 6 HOH B 23 623 37 HOH HOH . J 6 HOH B 24 624 41 HOH HOH . J 6 HOH B 25 625 31 HOH HOH . J 6 HOH B 26 626 30 HOH HOH . J 6 HOH B 27 627 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . F 5 23.614 26.439 33.476 1 131.43 ? O1 MES 507 A 1 HETATM 2 C C2 MES . . . F 5 23.049 26.728 34.755 1 128.93 ? C2 MES 507 A 1 HETATM 3 C C3 MES . . . F 5 21.668 26.096 34.895 1 132.73 ? C3 MES 507 A 1 HETATM 4 N N4 MES . . . F 5 20.847 26.502 33.76 1 141.28 ? N4 MES 507 A 1 HETATM 5 C C5 MES . . . F 5 21.418 26.106 32.475 1 129.53 ? C5 MES 507 A 1 HETATM 6 C C6 MES . . . F 5 22.762 26.813 32.391 1 128.73 ? C6 MES 507 A 1 HETATM 7 C C7 MES . . . F 5 19.442 26.163 33.977 1 153.16 ? C7 MES 507 A 1 HETATM 8 C C8 MES . . . F 5 18.565 26.911 32.976 1 158.38 ? C8 MES 507 A 1 HETATM 9 S S MES . . . F 5 16.965 26.745 33.4 1 158.19 ? S MES 507 A 1 HETATM 10 O O1S MES . . . F 5 16.225 27.938 32.937 1 163.84 ? O1S MES 507 A 1 HETATM 11 O O2S MES . . . F 5 16.403 25.557 32.716 1 154.22 ? O2S MES 507 A 1 HETATM 12 O O3S MES . . . F 5 16.81 26.62 34.868 1 149.69 ? O3S MES 507 A 1 HETATM 13 H H21 MES . . . F 5 22.968 27.81 34.878 1 154.71 ? H21 MES 507 A 1 HETATM 14 H H22 MES . . . F 5 23.707 26.349 35.54 1 154.71 ? H22 MES 507 A 1 HETATM 15 H H31 MES . . . F 5 21.754 25.008 34.918 1 159.28 ? H31 MES 507 A 1 HETATM 16 H H32 MES . . . F 5 21.196 26.414 35.827 1 159.28 ? H32 MES 507 A 1 HETATM 17 H HN4 MES . . . F 5 20.877 27.51 33.758 1 169.54 ? HN4 MES 507 A 1 HETATM 18 H H51 MES . . . F 5 20.763 26.409 31.656 1 155.44 ? H51 MES 507 A 1 HETATM 19 H H52 MES . . . F 5 21.547 25.022 32.434 1 155.44 ? H52 MES 507 A 1 HETATM 20 H H61 MES . . . F 5 23.242 26.564 31.442 1 154.48 ? H61 MES 507 A 1 HETATM 21 H H62 MES . . . F 5 22.603 27.893 32.401 1 154.48 ? H62 MES 507 A 1 HETATM 22 H H71 MES . . . F 5 19.301 25.087 33.858 1 183.8 ? H71 MES 507 A 1 HETATM 23 H H72 MES . . . F 5 19.152 26.433 34.995 1 183.8 ? H72 MES 507 A 1 HETATM 24 H H81 MES . . . F 5 18.836 27.969 32.966 1 190.06 ? H81 MES 507 A 1 HETATM 25 H H82 MES . . . F 5 18.725 26.51 31.973 1 190.06 ? H82 MES 507 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #