data_5K67 # _model_server_result.job_id iEfC_lVrVarFvJAzOV9bSw _model_server_result.datetime_utc '2024-11-24 03:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5K67 # _exptl.entry_id 5K67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 574.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[CuII(biot-pr-dpea)]2+' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K67 _cell.length_a 57.72 _cell.length_b 57.72 _cell.length_c 183.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.72 57.72 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.72 57.72 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 112 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CU _struct_conn.ptnr2_label_comp_id SI4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SI4 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.114 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H38 Cu N6 O2 S' _chem_comp.formula_weight 574.241 _chem_comp.id SI4 _chem_comp.mon_nstd_flag . _chem_comp.name '[CuII(biot-pr-dpea)]2+' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 SI4 sing 303 n n C19 N3 SI4 sing 304 n n C16 C15 SI4 doub 305 n y C16 C17 SI4 sing 306 n y C18 C17 SI4 sing 307 n n C26 N3 SI4 sing 308 n n C26 C25 SI4 sing 309 n n C15 C14 SI4 sing 310 n y C17 N4 SI4 doub 311 n y N3 C11 SI4 sing 312 n n N3 CU SI4 sing 313 n n C11 C12 SI4 sing 314 n n C25 C24 SI4 sing 315 n n C14 C13 SI4 doub 316 n y N4 C13 SI4 sing 317 n y N4 CU SI4 sing 318 n n C27 C12 SI4 sing 319 n n C27 N6 SI4 sing 320 n n O2 C1 SI4 doub 321 n n C24 C23 SI4 doub 322 n y C24 N5 SI4 sing 323 n y CU N5 SI4 sing 324 n n C1 N6 SI4 sing 325 n n C1 C2 SI4 sing 326 n n C23 C22 SI4 sing 327 n y N5 C20 SI4 doub 328 n y C2 C3 SI4 sing 329 n n C3 C4 SI4 sing 330 n n C22 C21 SI4 doub 331 n y C20 C21 SI4 sing 332 n y C4 C5 SI4 sing 333 n n C5 C6 SI4 sing 334 n n C6 C10 SI4 sing 335 n n C6 S1 SI4 sing 336 n n N2 C10 SI4 sing 337 n n N2 C9 SI4 sing 338 n n C10 C8 SI4 sing 339 n n S1 C7 SI4 sing 340 n n C9 O3 SI4 doub 341 n n C9 N1 SI4 sing 342 n n C8 N1 SI4 sing 343 n n C8 C7 SI4 sing 344 n n N1 H1 SI4 sing 345 n n N2 H2 SI4 sing 346 n n C10 H3 SI4 sing 347 n n C8 H4 SI4 sing 348 n n C7 H5 SI4 sing 349 n n C7 H6 SI4 sing 350 n n C6 H7 SI4 sing 351 n n C5 H8 SI4 sing 352 n n C5 H9 SI4 sing 353 n n C4 H10 SI4 sing 354 n n C4 H11 SI4 sing 355 n n C3 H12 SI4 sing 356 n n C3 H13 SI4 sing 357 n n C2 H14 SI4 sing 358 n n C2 H15 SI4 sing 359 n n N6 H16 SI4 sing 360 n n C27 H17 SI4 sing 361 n n C12 H18 SI4 sing 362 n n C11 H19 SI4 sing 363 n n C11 H20 SI4 sing 364 n n C26 H21 SI4 sing 365 n n C26 H22 SI4 sing 366 n n C25 H23 SI4 sing 367 n n C25 H24 SI4 sing 368 n n C23 H25 SI4 sing 369 n n C22 H26 SI4 sing 370 n n C21 H27 SI4 sing 371 n n C20 H28 SI4 sing 372 n n C19 H29 SI4 sing 373 n n C19 H30 SI4 sing 374 n n C18 H31 SI4 sing 375 n n C18 H32 SI4 sing 376 n n C16 H33 SI4 sing 377 n n C15 H34 SI4 sing 378 n n C14 H35 SI4 sing 379 n n C13 H36 SI4 sing 380 n n C27 H37 SI4 sing 381 n n C12 H38 SI4 sing 382 n n # _atom_sites.entry_id 5K67 _atom_sites.fract_transf_matrix[1][1] 0.017325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SI4 A 1 201 1 SI4 SI4 . C 3 GOL A 1 202 100 GOL GOL . D 4 HOH A 1 301 5 HOH HOH . D 4 HOH A 2 302 24 HOH HOH . D 4 HOH A 3 303 23 HOH HOH . D 4 HOH A 4 304 27 HOH HOH . D 4 HOH A 5 305 18 HOH HOH . D 4 HOH A 6 306 15 HOH HOH . D 4 HOH A 7 307 6 HOH HOH . D 4 HOH A 8 308 12 HOH HOH . D 4 HOH A 9 309 25 HOH HOH . D 4 HOH A 10 310 20 HOH HOH . D 4 HOH A 11 311 1 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 4 HOH HOH . D 4 HOH A 15 315 10 HOH HOH . D 4 HOH A 16 316 11 HOH HOH . D 4 HOH A 17 317 7 HOH HOH . D 4 HOH A 18 318 30 HOH HOH . D 4 HOH A 19 319 3 HOH HOH . D 4 HOH A 20 320 9 HOH HOH . D 4 HOH A 21 321 8 HOH HOH . D 4 HOH A 22 322 16 HOH HOH . D 4 HOH A 23 323 17 HOH HOH . D 4 HOH A 24 324 31 HOH HOH . D 4 HOH A 25 325 29 HOH HOH . D 4 HOH A 26 326 19 HOH HOH . D 4 HOH A 27 327 21 HOH HOH . D 4 HOH A 28 328 26 HOH HOH . D 4 HOH A 29 329 22 HOH HOH . D 4 HOH A 30 330 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 SI4 . . . B 2 14.339 29.364 -8.287 1 17.47 ? O3 SI4 201 A 1 HETATM 2 C C9 SI4 . . . B 2 15.568 29.346 -8.578 1 17.42 ? C9 SI4 201 A 1 HETATM 3 N N1 SI4 . . . B 2 16.519 29.354 -7.664 1 15.19 ? N1 SI4 201 A 1 HETATM 4 N N2 SI4 . . . B 2 16.028 29.062 -9.78 1 17.51 ? N2 SI4 201 A 1 HETATM 5 C C10 SI4 . . . B 2 17.5 29.123 -9.731 1 16.41 ? C10 SI4 201 A 1 HETATM 6 C C8 SI4 . . . B 2 17.845 29.399 -8.232 1 14.75 ? C8 SI4 201 A 1 HETATM 7 C C7 SI4 . . . B 2 18.568 28.187 -7.641 1 16.74 ? C7 SI4 201 A 1 HETATM 8 S S1 SI4 . . . B 2 18.004 26.729 -8.617 1 18.53 ? S1 SI4 201 A 1 HETATM 9 C C6 SI4 . . . B 2 18.077 27.733 -10.113 1 14.89 ? C6 SI4 201 A 1 HETATM 10 C C5 SI4 . . . B 2 17.609 27.172 -11.452 1 15.5 ? C5 SI4 201 A 1 HETATM 11 C C4 SI4 . . . B 2 18.291 25.896 -11.964 1 16.27 ? C4 SI4 201 A 1 HETATM 12 C C3 SI4 . . . B 2 17.623 25.401 -13.288 1 17.02 ? C3 SI4 201 A 1 HETATM 13 C C2 SI4 . . . B 2 18.501 24.22 -13.733 1 18.92 ? C2 SI4 201 A 1 HETATM 14 C C1 SI4 . . . B 2 19.749 24.621 -14.459 1 19.45 ? C1 SI4 201 A 1 HETATM 15 N N6 SI4 . . . B 2 20.916 23.874 -14.205 1 21.94 ? N6 SI4 201 A 1 HETATM 16 O O2 SI4 . . . B 2 19.816 25.742 -15.022 1 18.72 ? O2 SI4 201 A 1 HETATM 17 C C27 SI4 . . . B 2 22.022 24.049 -15.243 1 28.61 ? C27 SI4 201 A 1 HETATM 18 C C12 SI4 . . . B 2 23.195 25.025 -15.117 1 35.04 ? C12 SI4 201 A 1 HETATM 19 C C11 SI4 . . . B 2 23.99 25.357 -16.399 1 51.42 ? C11 SI4 201 A 1 HETATM 20 N N3 SI4 . . . B 2 25.484 25.114 -16.56 1 59.64 ? N3 SI4 201 A 1 HETATM 21 CU CU SI4 . . . B 2 26.427 24.302 -14.698 1 59.32 ? CU SI4 201 A 1 HETATM 22 N N5 SI4 . . . B 2 27.172 26.142 -14.203 1 74.67 ? N5 SI4 201 A 1 HETATM 23 N N4 SI4 . . . B 2 28.216 23.588 -15.753 1 83.77 ? N4 SI4 201 A 1 HETATM 24 C C26 SI4 . . . B 2 26.099 26.339 -17.232 1 40.58 ? C26 SI4 201 A 1 HETATM 25 C C25 SI4 . . . B 2 26.197 27.529 -16.315 1 41.76 ? C25 SI4 201 A 1 HETATM 26 C C24 SI4 . . . B 2 26.977 27.287 -14.969 1 51.91 ? C24 SI4 201 A 1 HETATM 27 C C23 SI4 . . . B 2 27.573 28.334 -14.425 1 40.65 ? C23 SI4 201 A 1 HETATM 28 C C22 SI4 . . . B 2 28.292 28.189 -13.201 1 124.84 ? C22 SI4 201 A 1 HETATM 29 C C21 SI4 . . . B 2 28.489 27.003 -12.456 1 46.28 ? C21 SI4 201 A 1 HETATM 30 C C20 SI4 . . . B 2 27.841 25.947 -13.008 1 37.28 ? C20 SI4 201 A 1 HETATM 31 C C19 SI4 . . . B 2 25.693 24.26 -17.789 1 66.14 ? C19 SI4 201 A 1 HETATM 32 C C18 SI4 . . . B 2 26.604 23.027 -17.647 1 60.53 ? C18 SI4 201 A 1 HETATM 33 C C17 SI4 . . . B 2 28.05 23.096 -17.036 1 82.1 ? C17 SI4 201 A 1 HETATM 34 C C16 SI4 . . . B 2 29.233 22.603 -17.725 1 58.7 ? C16 SI4 201 A 1 HETATM 35 C C15 SI4 . . . B 2 30.549 22.648 -17.169 1 55.23 ? C15 SI4 201 A 1 HETATM 36 C C14 SI4 . . . B 2 30.737 23.158 -15.834 1 44.37 ? C14 SI4 201 A 1 HETATM 37 C C13 SI4 . . . B 2 29.523 23.608 -15.199 1 68.19 ? C13 SI4 201 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #