data_5K68 # _model_server_result.job_id Filnn5UPj1ISTzpEnVe_jA _model_server_result.datetime_utc '2024-11-17 08:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5K68 # _exptl.entry_id 5K68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.267 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[CuII(biot-bu-dpea)]2+' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K68 _cell.length_a 57.69 _cell.length_b 57.69 _cell.length_c 183.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.69 57.69 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.69 57.69 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 112 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CU1 _struct_conn.ptnr2_label_comp_id SI9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SI9 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.091 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H40 Cu N6 O2 S' _chem_comp.formula_weight 588.267 _chem_comp.id SI9 _chem_comp.mon_nstd_flag . _chem_comp.name '[CuII(biot-bu-dpea)]2+' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 SI9 sing 290 n n C19 N3 SI9 sing 291 n n C18 C17 SI9 sing 292 n n C26 N3 SI9 sing 293 n n C26 C25 SI9 sing 294 n n C16 C17 SI9 doub 295 n y C16 C15 SI9 sing 296 n y C11 N3 SI9 sing 297 n n C11 C12 SI9 sing 298 n n N3 CU1 SI9 sing 299 n n C17 N4 SI9 sing 300 n y C15 C14 SI9 doub 301 n y C25 C24 SI9 sing 302 n n C12 C27 SI9 sing 303 n n C27 C28 SI9 sing 304 n n N4 C13 SI9 doub 305 n y N4 CU1 SI9 sing 306 n n C14 C13 SI9 sing 307 n y C24 C23 SI9 doub 308 n y C24 N5 SI9 sing 309 n y O1 C1 SI9 doub 310 n n C23 C22 SI9 sing 311 n y CU1 N5 SI9 sing 312 n n N5 C20 SI9 doub 313 n y C28 N6 SI9 sing 314 n n C1 N6 SI9 sing 315 n n C1 C2 SI9 sing 316 n n C22 C21 SI9 doub 317 n y C2 C3 SI9 sing 318 n n C20 C21 SI9 sing 319 n y C3 C4 SI9 sing 320 n n C4 C5 SI9 sing 321 n n C5 C6 SI9 sing 322 n n C6 C10 SI9 sing 323 n n C6 S1 SI9 sing 324 n n N2 C10 SI9 sing 325 n n N2 C9 SI9 sing 326 n n C10 C8 SI9 sing 327 n n S1 C7 SI9 sing 328 n n C9 O3 SI9 doub 329 n n C9 N1 SI9 sing 330 n n C8 C7 SI9 sing 331 n n C8 N1 SI9 sing 332 n n N1 H1 SI9 sing 333 n n N2 H2 SI9 sing 334 n n C10 H3 SI9 sing 335 n n C8 H4 SI9 sing 336 n n C7 H5 SI9 sing 337 n n C7 H6 SI9 sing 338 n n C6 H7 SI9 sing 339 n n C5 H8 SI9 sing 340 n n C5 H9 SI9 sing 341 n n C4 H10 SI9 sing 342 n n C4 H11 SI9 sing 343 n n C3 H12 SI9 sing 344 n n C3 H13 SI9 sing 345 n n C2 H14 SI9 sing 346 n n C2 H15 SI9 sing 347 n n N6 H16 SI9 sing 348 n n C28 H17 SI9 sing 349 n n C28 H18 SI9 sing 350 n n C27 H19 SI9 sing 351 n n C27 H20 SI9 sing 352 n n C12 H21 SI9 sing 353 n n C12 H22 SI9 sing 354 n n C11 H23 SI9 sing 355 n n C11 H24 SI9 sing 356 n n C26 H25 SI9 sing 357 n n C26 H26 SI9 sing 358 n n C25 H27 SI9 sing 359 n n C25 H28 SI9 sing 360 n n C23 H29 SI9 sing 361 n n C22 H30 SI9 sing 362 n n C21 H31 SI9 sing 363 n n C20 H32 SI9 sing 364 n n C19 H33 SI9 sing 365 n n C19 H34 SI9 sing 366 n n C18 H35 SI9 sing 367 n n C18 H36 SI9 sing 368 n n C16 H37 SI9 sing 369 n n C15 H38 SI9 sing 370 n n C14 H39 SI9 sing 371 n n C13 H40 SI9 sing 372 n n # _atom_sites.entry_id 5K68 _atom_sites.fract_transf_matrix[1][1] 0.017334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SI9 A 1 201 1 SI9 SI9 . C 3 HOH A 1 301 65 HOH HOH . C 3 HOH A 2 302 44 HOH HOH . C 3 HOH A 3 303 52 HOH HOH . C 3 HOH A 4 304 14 HOH HOH . C 3 HOH A 5 305 30 HOH HOH . C 3 HOH A 6 306 1 HOH HOH . C 3 HOH A 7 307 39 HOH HOH . C 3 HOH A 8 308 3 HOH HOH . C 3 HOH A 9 309 11 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 64 HOH HOH . C 3 HOH A 12 312 53 HOH HOH . C 3 HOH A 13 313 5 HOH HOH . C 3 HOH A 14 314 48 HOH HOH . C 3 HOH A 15 315 68 HOH HOH . C 3 HOH A 16 316 61 HOH HOH . C 3 HOH A 17 317 26 HOH HOH . C 3 HOH A 18 318 29 HOH HOH . C 3 HOH A 19 319 6 HOH HOH . C 3 HOH A 20 320 40 HOH HOH . C 3 HOH A 21 321 59 HOH HOH . C 3 HOH A 22 322 43 HOH HOH . C 3 HOH A 23 323 51 HOH HOH . C 3 HOH A 24 324 18 HOH HOH . C 3 HOH A 25 325 38 HOH HOH . C 3 HOH A 26 326 19 HOH HOH . C 3 HOH A 27 327 28 HOH HOH . C 3 HOH A 28 328 8 HOH HOH . C 3 HOH A 29 329 17 HOH HOH . C 3 HOH A 30 330 60 HOH HOH . C 3 HOH A 31 331 46 HOH HOH . C 3 HOH A 32 332 56 HOH HOH . C 3 HOH A 33 333 66 HOH HOH . C 3 HOH A 34 334 2 HOH HOH . C 3 HOH A 35 335 12 HOH HOH . C 3 HOH A 36 336 10 HOH HOH . C 3 HOH A 37 337 4 HOH HOH . C 3 HOH A 38 338 31 HOH HOH . C 3 HOH A 39 339 54 HOH HOH . C 3 HOH A 40 340 37 HOH HOH . C 3 HOH A 41 341 20 HOH HOH . C 3 HOH A 42 342 9 HOH HOH . C 3 HOH A 43 343 21 HOH HOH . C 3 HOH A 44 344 47 HOH HOH . C 3 HOH A 45 345 42 HOH HOH . C 3 HOH A 46 346 7 HOH HOH . C 3 HOH A 47 347 22 HOH HOH . C 3 HOH A 48 348 58 HOH HOH . C 3 HOH A 49 349 16 HOH HOH . C 3 HOH A 50 350 27 HOH HOH . C 3 HOH A 51 351 32 HOH HOH . C 3 HOH A 52 352 25 HOH HOH . C 3 HOH A 53 353 36 HOH HOH . C 3 HOH A 54 354 45 HOH HOH . C 3 HOH A 55 355 50 HOH HOH . C 3 HOH A 56 356 63 HOH HOH . C 3 HOH A 57 357 35 HOH HOH . C 3 HOH A 58 358 15 HOH HOH . C 3 HOH A 59 359 33 HOH HOH . C 3 HOH A 60 360 41 HOH HOH . C 3 HOH A 61 361 57 HOH HOH . C 3 HOH A 62 362 55 HOH HOH . C 3 HOH A 63 363 24 HOH HOH . C 3 HOH A 64 364 67 HOH HOH . C 3 HOH A 65 365 49 HOH HOH . C 3 HOH A 66 366 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 SI9 . . . B 2 14.301 29.422 -8.237 1 12.44 ? O3 SI9 201 A 1 HETATM 2 C C9 SI9 . . . B 2 15.544 29.334 -8.509 1 11.88 ? C9 SI9 201 A 1 HETATM 3 N N1 SI9 . . . B 2 16.528 29.508 -7.609 1 11.53 ? N1 SI9 201 A 1 HETATM 4 N N2 SI9 . . . B 2 16.045 29.117 -9.733 1 11.45 ? N2 SI9 201 A 1 HETATM 5 C C10 SI9 . . . B 2 17.531 29.1 -9.715 1 11.26 ? C10 SI9 201 A 1 HETATM 6 C C8 SI9 . . . B 2 17.852 29.373 -8.172 1 11.41 ? C8 SI9 201 A 1 HETATM 7 C C7 SI9 . . . B 2 18.599 28.133 -7.615 1 12.15 ? C7 SI9 201 A 1 HETATM 8 S S1 SI9 . . . B 2 17.984 26.739 -8.619 1 12.46 ? S1 SI9 201 A 1 HETATM 9 C C6 SI9 . . . B 2 18.11 27.753 -10.127 1 11.44 ? C6 SI9 201 A 1 HETATM 10 C C5 SI9 . . . B 2 17.489 27.136 -11.385 1 13.34 ? C5 SI9 201 A 1 HETATM 11 C C4 SI9 . . . B 2 18.367 26.019 -11.965 1 11.91 ? C4 SI9 201 A 1 HETATM 12 C C3 SI9 . . . B 2 17.654 25.36 -13.201 1 13.47 ? C3 SI9 201 A 1 HETATM 13 C C2 SI9 . . . B 2 18.537 24.254 -13.819 1 13 ? C2 SI9 201 A 1 HETATM 14 C C1 SI9 . . . B 2 19.87 24.815 -14.391 1 12.97 ? C1 SI9 201 A 1 HETATM 15 N N6 SI9 . . . B 2 20.982 24.075 -14.117 1 15.54 ? N6 SI9 201 A 1 HETATM 16 O O1 SI9 . . . B 2 19.847 25.892 -15.066 1 15.01 ? O1 SI9 201 A 1 HETATM 17 C C28 SI9 . . . B 2 22.313 24.731 -14.517 1 21.09 ? C28 SI9 201 A 1 HETATM 18 C C27 SI9 . . . B 2 22.656 24.099 -15.861 1 25.16 ? C27 SI9 201 A 1 HETATM 19 C C12 SI9 . . . B 2 23.977 24.866 -16.285 1 38.57 ? C12 SI9 201 A 1 HETATM 20 C C11 SI9 . . . B 2 24.893 24.241 -17.386 1 57.87 ? C11 SI9 201 A 1 HETATM 21 N N3 SI9 . . . B 2 26.43 24.392 -17.111 0.8 42.49 ? N3 SI9 201 A 1 HETATM 22 CU CU1 SI9 . . . B 2 27.097 23.922 -14.982 0.8 43.89 ? CU1 SI9 201 A 1 HETATM 23 N N5 SI9 . . . B 2 27.311 25.991 -14.661 0.8 72.34 ? N5 SI9 201 A 1 HETATM 24 N N4 SI9 . . . B 2 28.943 23.288 -15.805 0.8 60.76 ? N4 SI9 201 A 1 HETATM 25 C C26 SI9 . . . B 2 26.665 25.789 -17.661 0.8 64.28 ? C26 SI9 201 A 1 HETATM 26 C C25 SI9 . . . B 2 26.182 26.99 -16.792 0.8 72.09 ? C25 SI9 201 A 1 HETATM 27 C C24 SI9 . . . B 2 26.924 27.086 -15.447 0.8 82.3 ? C24 SI9 201 A 1 HETATM 28 C C23 SI9 . . . B 2 27.234 28.372 -15.012 0.8 82.66 ? C23 SI9 201 A 1 HETATM 29 C C22 SI9 . . . B 2 27.929 28.366 -13.827 0.8 101.55 ? C22 SI9 201 A 1 HETATM 30 C C21 SI9 . . . B 2 28.295 27.206 -13.128 0.8 78.25 ? C21 SI9 201 A 1 HETATM 31 C C20 SI9 . . . B 2 27.981 26.016 -13.523 0.8 66.57 ? C20 SI9 201 A 1 HETATM 32 C C19 SI9 . . . B 2 27.044 23.57 -18.205 0.8 52.29 ? C19 SI9 201 A 1 HETATM 33 C C18 SI9 . . . B 2 27.577 22.231 -17.683 0.8 63.85 ? C18 SI9 201 A 1 HETATM 34 C C17 SI9 . . . B 2 28.906 22.505 -16.977 0.8 63.87 ? C17 SI9 201 A 1 HETATM 35 C C16 SI9 . . . B 2 30.07 22.008 -17.595 0.8 61.74 ? C16 SI9 201 A 1 HETATM 36 C C15 SI9 . . . B 2 31.272 22.263 -16.937 0.8 38.32 ? C15 SI9 201 A 1 HETATM 37 C C14 SI9 . . . B 2 31.269 23.064 -15.787 0.8 52.9 ? C14 SI9 201 A 1 HETATM 38 C C13 SI9 . . . B 2 30.125 23.585 -15.121 0.8 38.28 ? C13 SI9 201 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 38 #