data_5K6J # _model_server_result.job_id J7IXEgen-Eca9KHLIdAybw _model_server_result.datetime_utc '2024-11-22 20:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":518}' # _entry.id 5K6J # _exptl.entry_id 5K6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K6J _cell.length_a 53.839 _cell.length_b 53.839 _cell.length_c 229.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 77 A HIS 238 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc2 A NE2 HIS 113 A HIS 274 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 A OD2 ASP 114 A ASP 275 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 A OD1 ASP 114 A ASP 275 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A OD1 ASP 231 A ASP 392 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 B ZN ZN . A ZN 501 1_555 D O18 6QQ . A 6QQ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 B ZN ZN . A ZN 501 1_555 D O19 6QQ . A 6QQ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 C MG MG . A MG 502 1_555 D O16 6QQ . A 6QQ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc9 C MG MG . A MG 502 1_555 D O18 6QQ . A 6QQ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc10 C MG MG . A MG 502 1_555 V O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc11 C MG MG . A MG 502 1_555 V O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 C MG MG . A MG 502 1_555 V O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 130 n n C1 C2 EDO sing 131 n n C1 H11 EDO sing 132 n n C1 H12 EDO sing 133 n n O1 HO1 EDO sing 134 n n C2 O2 EDO sing 135 n n C2 H21 EDO sing 136 n n C2 H22 EDO sing 137 n n O2 HO2 EDO sing 138 n n # _atom_sites.entry_id 5K6J _atom_sites.fract_transf_matrix[1][1] 0.018574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 MG A 1 502 502 MG MG . D 4 6QQ A 1 503 1 6QQ INX . E 5 EDO A 1 504 1 EDO EDO . F 5 EDO A 1 505 2 EDO EDO . G 5 EDO A 1 506 3 EDO EDO . H 5 EDO A 1 507 4 EDO EDO . I 5 EDO A 1 508 5 EDO EDO . J 5 EDO A 1 509 6 EDO EDO . K 5 EDO A 1 510 7 EDO EDO . L 5 EDO A 1 511 8 EDO EDO . M 5 EDO A 1 512 9 EDO EDO . N 5 EDO A 1 513 10 EDO EDO . O 5 EDO A 1 514 11 EDO EDO . P 5 EDO A 1 515 12 EDO EDO . Q 5 EDO A 1 516 13 EDO EDO . R 5 EDO A 1 517 14 EDO EDO . S 5 EDO A 1 518 15 EDO EDO . T 5 EDO A 1 519 16 EDO EDO . U 5 EDO A 1 520 17 EDO EDO . V 6 HOH A 1 601 8 HOH HOH . V 6 HOH A 2 602 56 HOH HOH . V 6 HOH A 3 603 503 HOH HOH . V 6 HOH A 4 604 1 HOH HOH . V 6 HOH A 5 605 44 HOH HOH . V 6 HOH A 6 606 29 HOH HOH . V 6 HOH A 7 607 21 HOH HOH . V 6 HOH A 8 608 122 HOH HOH . V 6 HOH A 9 609 109 HOH HOH . V 6 HOH A 10 610 107 HOH HOH . V 6 HOH A 11 611 28 HOH HOH . V 6 HOH A 12 612 3 HOH HOH . V 6 HOH A 13 613 99 HOH HOH . V 6 HOH A 14 614 53 HOH HOH . V 6 HOH A 15 615 79 HOH HOH . V 6 HOH A 16 616 124 HOH HOH . V 6 HOH A 17 617 14 HOH HOH . V 6 HOH A 18 618 11 HOH HOH . V 6 HOH A 19 619 17 HOH HOH . V 6 HOH A 20 620 68 HOH HOH . V 6 HOH A 21 621 7 HOH HOH . V 6 HOH A 22 622 2 HOH HOH . V 6 HOH A 23 623 84 HOH HOH . V 6 HOH A 24 624 120 HOH HOH . V 6 HOH A 25 625 48 HOH HOH . V 6 HOH A 26 626 103 HOH HOH . V 6 HOH A 27 627 114 HOH HOH . V 6 HOH A 28 628 9 HOH HOH . V 6 HOH A 29 629 12 HOH HOH . V 6 HOH A 30 630 60 HOH HOH . V 6 HOH A 31 631 97 HOH HOH . V 6 HOH A 32 632 106 HOH HOH . V 6 HOH A 33 633 16 HOH HOH . V 6 HOH A 34 634 34 HOH HOH . V 6 HOH A 35 635 102 HOH HOH . V 6 HOH A 36 636 88 HOH HOH . V 6 HOH A 37 637 95 HOH HOH . V 6 HOH A 38 638 18 HOH HOH . V 6 HOH A 39 639 505 HOH HOH . V 6 HOH A 40 640 127 HOH HOH . V 6 HOH A 41 641 104 HOH HOH . V 6 HOH A 42 642 5 HOH HOH . V 6 HOH A 43 643 94 HOH HOH . V 6 HOH A 44 644 129 HOH HOH . V 6 HOH A 45 645 96 HOH HOH . V 6 HOH A 46 646 22 HOH HOH . V 6 HOH A 47 647 33 HOH HOH . V 6 HOH A 48 648 57 HOH HOH . V 6 HOH A 49 649 61 HOH HOH . V 6 HOH A 50 650 50 HOH HOH . V 6 HOH A 51 651 49 HOH HOH . V 6 HOH A 52 652 13 HOH HOH . V 6 HOH A 53 653 131 HOH HOH . V 6 HOH A 54 654 90 HOH HOH . V 6 HOH A 55 655 25 HOH HOH . V 6 HOH A 56 656 10 HOH HOH . V 6 HOH A 57 657 101 HOH HOH . V 6 HOH A 58 658 27 HOH HOH . V 6 HOH A 59 659 128 HOH HOH . V 6 HOH A 60 660 85 HOH HOH . V 6 HOH A 61 661 6 HOH HOH . V 6 HOH A 62 662 506 HOH HOH . V 6 HOH A 63 663 134 HOH HOH . V 6 HOH A 64 664 62 HOH HOH . V 6 HOH A 65 665 73 HOH HOH . V 6 HOH A 66 666 36 HOH HOH . V 6 HOH A 67 667 15 HOH HOH . V 6 HOH A 68 668 133 HOH HOH . V 6 HOH A 69 669 115 HOH HOH . V 6 HOH A 70 670 64 HOH HOH . V 6 HOH A 71 671 55 HOH HOH . V 6 HOH A 72 672 125 HOH HOH . V 6 HOH A 73 673 105 HOH HOH . V 6 HOH A 74 674 66 HOH HOH . V 6 HOH A 75 675 504 HOH HOH . V 6 HOH A 76 676 46 HOH HOH . V 6 HOH A 77 677 4 HOH HOH . V 6 HOH A 78 678 80 HOH HOH . V 6 HOH A 79 679 51 HOH HOH . V 6 HOH A 80 680 58 HOH HOH . V 6 HOH A 81 681 110 HOH HOH . V 6 HOH A 82 682 41 HOH HOH . V 6 HOH A 83 683 38 HOH HOH . V 6 HOH A 84 684 116 HOH HOH . V 6 HOH A 85 685 72 HOH HOH . V 6 HOH A 86 686 32 HOH HOH . V 6 HOH A 87 687 89 HOH HOH . V 6 HOH A 88 688 70 HOH HOH . V 6 HOH A 89 689 118 HOH HOH . V 6 HOH A 90 690 108 HOH HOH . V 6 HOH A 91 691 39 HOH HOH . V 6 HOH A 92 692 86 HOH HOH . V 6 HOH A 93 693 67 HOH HOH . V 6 HOH A 94 694 71 HOH HOH . V 6 HOH A 95 695 87 HOH HOH . V 6 HOH A 96 696 121 HOH HOH . V 6 HOH A 97 697 69 HOH HOH . V 6 HOH A 98 698 52 HOH HOH . V 6 HOH A 99 699 31 HOH HOH . V 6 HOH A 100 700 91 HOH HOH . V 6 HOH A 101 701 42 HOH HOH . V 6 HOH A 102 702 77 HOH HOH . V 6 HOH A 103 703 24 HOH HOH . V 6 HOH A 104 704 81 HOH HOH . V 6 HOH A 105 705 119 HOH HOH . V 6 HOH A 106 706 98 HOH HOH . V 6 HOH A 107 707 112 HOH HOH . V 6 HOH A 108 708 40 HOH HOH . V 6 HOH A 109 709 43 HOH HOH . V 6 HOH A 110 710 132 HOH HOH . V 6 HOH A 111 711 23 HOH HOH . V 6 HOH A 112 712 37 HOH HOH . V 6 HOH A 113 713 30 HOH HOH . V 6 HOH A 114 714 75 HOH HOH . V 6 HOH A 115 715 113 HOH HOH . V 6 HOH A 116 716 130 HOH HOH . V 6 HOH A 117 717 19 HOH HOH . V 6 HOH A 118 718 63 HOH HOH . V 6 HOH A 119 719 123 HOH HOH . V 6 HOH A 120 720 78 HOH HOH . V 6 HOH A 121 721 117 HOH HOH . V 6 HOH A 122 722 54 HOH HOH . V 6 HOH A 123 723 35 HOH HOH . V 6 HOH A 124 724 93 HOH HOH . V 6 HOH A 125 725 26 HOH HOH . V 6 HOH A 126 726 111 HOH HOH . V 6 HOH A 127 727 47 HOH HOH . V 6 HOH A 128 728 74 HOH HOH . V 6 HOH A 129 729 59 HOH HOH . V 6 HOH A 130 730 100 HOH HOH . V 6 HOH A 131 731 92 HOH HOH . V 6 HOH A 132 732 65 HOH HOH . V 6 HOH A 133 733 45 HOH HOH . V 6 HOH A 134 734 82 HOH HOH . V 6 HOH A 135 735 20 HOH HOH . V 6 HOH A 136 736 135 HOH HOH . V 6 HOH A 137 737 76 HOH HOH . V 6 HOH A 138 738 83 HOH HOH . V 6 HOH A 139 739 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 5 -46.553 102 141.267 1 40.93 ? C1 EDO 518 A 1 HETATM 2 O O1 EDO . . . S 5 -46.272 102.952 142.298 1 42.02 ? O1 EDO 518 A 1 HETATM 3 C C2 EDO . . . S 5 -47.628 102.536 140.329 1 41.06 ? C2 EDO 518 A 1 HETATM 4 O O2 EDO . . . S 5 -47.232 103.804 139.793 1 36.36 ? O2 EDO 518 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #