data_5K76
#
_model_server_result.job_id            9edv9hP687IEudsglrtQBQ 
_model_server_result.datetime_utc      '2024-12-27 09:27:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5K76 
#
_exptl.entry_id    5K76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              385.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-(4-morpholin-4-ylcyclohexyl)-5-(oxan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K76 
_cell.length_a            88.051 
_cell.length_b            127.099 
_cell.length_c            142.078 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale3 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale4 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale5 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
#
_chem_comp.formula           'C21 H31 N5 O2' 
_chem_comp.formula_weight    385.503 
_chem_comp.id                6R1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-(4-morpholin-4-ylcyclohexyl)-5-(oxan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 6R1 sing 1 n n 
C25 O26 6R1 sing 2 n n 
C24 N23 6R1 sing 3 n n 
O26 C27 6R1 sing 4 n n 
N23 C20 6R1 sing 5 n n 
N23 C28 6R1 sing 6 n n 
O13 C14 6R1 sing 7 n n 
O13 C12 6R1 sing 8 n n 
C14 C15 6R1 sing 9 n n 
C20 C21 6R1 sing 10 n n 
C20 C19 6R1 sing 11 n n 
C12 C11 6R1 sing 12 n n 
C27 C28 6R1 sing 13 n n 
C21 C22 6R1 sing 14 n n 
C22 C17 6R1 sing 15 n n 
C19 C18 6R1 sing 16 n n 
C15 C10 6R1 sing 17 n n 
C18 C17 6R1 sing 18 n n 
C11 C10 6R1 sing 19 n n 
C10 C9 6R1 sing 20 n n 
C17 N16 6R1 sing 21 n n 
N16 C7 6R1 sing 22 n n 
C9 C8 6R1 sing 23 n y 
C9 C1 6R1 doub 24 n y 
C7 C8 6R1 doub 25 n y 
C7 N6 6R1 sing 26 n y 
C8 C3 6R1 sing 27 n y 
C1 N2 6R1 sing 28 n y 
N6 C5 6R1 doub 29 n y 
C3 N2 6R1 sing 30 n y 
C3 N4 6R1 doub 31 n y 
C5 N4 6R1 sing 32 n y 
C1 H1 6R1 sing 33 n n 
C10 H2 6R1 sing 34 n n 
C11 H3 6R1 sing 35 n n 
C11 H4 6R1 sing 36 n n 
C12 H5 6R1 sing 37 n n 
C12 H6 6R1 sing 38 n n 
C14 H7 6R1 sing 39 n n 
C14 H8 6R1 sing 40 n n 
C15 H9 6R1 sing 41 n n 
C15 H10 6R1 sing 42 n n 
C19 H11 6R1 sing 43 n n 
C19 H12 6R1 sing 44 n n 
C20 H13 6R1 sing 45 n n 
C21 H14 6R1 sing 46 n n 
C21 H15 6R1 sing 47 n n 
C22 H16 6R1 sing 48 n n 
C22 H17 6R1 sing 49 n n 
C24 H19 6R1 sing 50 n n 
C24 H20 6R1 sing 51 n n 
C27 H21 6R1 sing 52 n n 
C27 H22 6R1 sing 53 n n 
N2 H23 6R1 sing 54 n n 
C5 H24 6R1 sing 55 n n 
N16 H25 6R1 sing 56 n n 
C17 H26 6R1 sing 57 n n 
C18 H27 6R1 sing 58 n n 
C18 H28 6R1 sing 59 n n 
C25 H29 6R1 sing 60 n n 
C25 H30 6R1 sing 61 n n 
C28 H31 6R1 sing 62 n n 
C28 H32 6R1 sing 63 n n 
#
_atom_sites.entry_id                     5K76 
_atom_sites.fract_transf_matrix[1][1]    0.011357 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6R1 A 1 501 1 6R1 INH . 
D 2 6R1 B 1 501 2 6R1 INH . 
E 3 HOH A 1 601 25 HOH HOH . 
E 3 HOH A 2 602 21 HOH HOH . 
E 3 HOH A 3 603 41 HOH HOH . 
E 3 HOH A 4 604 48 HOH HOH . 
E 3 HOH A 5 605 12 HOH HOH . 
E 3 HOH A 6 606 49 HOH HOH . 
E 3 HOH A 7 607 14 HOH HOH . 
E 3 HOH A 8 608 38 HOH HOH . 
E 3 HOH A 9 609 33 HOH HOH . 
E 3 HOH A 10 610 19 HOH HOH . 
E 3 HOH A 11 611 11 HOH HOH . 
E 3 HOH A 12 612 7 HOH HOH . 
E 3 HOH A 13 613 28 HOH HOH . 
E 3 HOH A 14 614 27 HOH HOH . 
E 3 HOH A 15 615 30 HOH HOH . 
E 3 HOH A 16 616 13 HOH HOH . 
E 3 HOH A 17 617 16 HOH HOH . 
E 3 HOH A 18 618 24 HOH HOH . 
E 3 HOH A 19 619 29 HOH HOH . 
F 3 HOH B 1 601 44 HOH HOH . 
F 3 HOH B 2 602 39 HOH HOH . 
F 3 HOH B 3 603 37 HOH HOH . 
F 3 HOH B 4 604 47 HOH HOH . 
F 3 HOH B 5 605 4 HOH HOH . 
F 3 HOH B 6 606 32 HOH HOH . 
F 3 HOH B 7 607 50 HOH HOH . 
F 3 HOH B 8 608 35 HOH HOH . 
F 3 HOH B 9 609 5 HOH HOH . 
F 3 HOH B 10 610 46 HOH HOH . 
F 3 HOH B 11 611 43 HOH HOH . 
F 3 HOH B 12 612 40 HOH HOH . 
F 3 HOH B 13 613 8 HOH HOH . 
F 3 HOH B 14 614 34 HOH HOH . 
F 3 HOH B 15 615 18 HOH HOH . 
F 3 HOH B 16 616 10 HOH HOH . 
F 3 HOH B 17 617 23 HOH HOH . 
F 3 HOH B 18 618 22 HOH HOH . 
F 3 HOH B 19 619 26 HOH HOH . 
F 3 HOH B 20 620 17 HOH HOH . 
F 3 HOH B 21 621 9 HOH HOH . 
F 3 HOH B 22 622 31 HOH HOH . 
F 3 HOH B 23 623 6 HOH HOH . 
F 3 HOH B 24 624 15 HOH HOH . 
F 3 HOH B 25 625 36 HOH HOH . 
F 3 HOH B 26 626 45 HOH HOH . 
F 3 HOH B 27 627 42 HOH HOH . 
F 3 HOH B 28 628 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6R1 . . . D 2 -56.931 -20.025 -7.552 1 56.36 ? C1 6R1 501 B 1 
HETATM 2 C C3 6R1 . . . D 2 -54.923 -20.218 -6.622 1 56.6 ? C3 6R1 501 B 1 
HETATM 3 N N6 6R1 . . . D 2 -52.364 -20.17 -7.523 1 54.29 ? N6 6R1 501 B 1 
HETATM 4 C C7 6R1 . . . D 2 -53.37 -20.021 -8.413 1 55.16 ? C7 6R1 501 B 1 
HETATM 5 C C8 6R1 . . . D 2 -54.74 -20.031 -8.004 1 57.14 ? C8 6R1 501 B 1 
HETATM 6 C C9 6R1 . . . D 2 -56.045 -19.901 -8.579 1 56.11 ? C9 6R1 501 B 1 
HETATM 7 C C10 6R1 . . . D 2 -56.362 -19.653 -10.034 1 54.69 ? C10 6R1 501 B 1 
HETATM 8 C C11 6R1 . . . D 2 -56.062 -18.207 -10.454 1 52.9 ? C11 6R1 501 B 1 
HETATM 9 C C12 6R1 . . . D 2 -56.456 -17.985 -11.895 1 52.83 ? C12 6R1 501 B 1 
HETATM 10 C C14 6R1 . . . D 2 -58.083 -19.672 -11.856 1 53.71 ? C14 6R1 501 B 1 
HETATM 11 C C15 6R1 . . . D 2 -57.807 -20.025 -10.414 1 54.72 ? C15 6R1 501 B 1 
HETATM 12 C C19 6R1 . . . D 2 -50.028 -18.696 -11.669 1 55.38 ? C19 6R1 501 B 1 
HETATM 13 C C20 6R1 . . . D 2 -49.358 -20.033 -12.003 1 55.15 ? C20 6R1 501 B 1 
HETATM 14 C C21 6R1 . . . D 2 -49.636 -21.145 -10.976 1 52.66 ? C21 6R1 501 B 1 
HETATM 15 C C22 6R1 . . . D 2 -51.123 -21.224 -10.601 1 53.7 ? C22 6R1 501 B 1 
HETATM 16 N N23 6R1 . . . D 2 -47.959 -19.848 -12.423 1 57.86 ? N23 6R1 501 B 1 
HETATM 17 C C24 6R1 . . . D 2 -46.933 -19.983 -11.372 1 58.9 ? C24 6R1 501 B 1 
HETATM 18 C C27 6R1 . . . D 2 -46.239 -20.201 -14.107 1 57.95 ? C27 6R1 501 B 1 
HETATM 19 N N2 6R1 . . . D 2 -56.265 -20.213 -6.376 1 55.99 ? N2 6R1 501 B 1 
HETATM 20 N N4 6R1 . . . D 2 -53.946 -20.361 -5.709 1 55.88 ? N4 6R1 501 B 1 
HETATM 21 C C5 6R1 . . . D 2 -52.718 -20.325 -6.24 1 54.41 ? C5 6R1 501 B 1 
HETATM 22 O O13 6R1 . . . D 2 -57.836 -18.287 -12.107 1 52.95 ? O13 6R1 501 B 1 
HETATM 23 N N16 6R1 . . . D 2 -53.032 -19.897 -9.709 1 52.93 ? N16 6R1 501 B 1 
HETATM 24 C C17 6R1 . . . D 2 -51.662 -19.858 -10.195 1 53.74 ? C17 6R1 501 B 1 
HETATM 25 C C18 6R1 . . . D 2 -51.503 -18.869 -11.326 1 54.59 ? C18 6R1 501 B 1 
HETATM 26 C C25 6R1 . . . D 2 -45.585 -19.603 -11.93 1 58.23 ? C25 6R1 501 B 1 
HETATM 27 O O26 6R1 . . . D 2 -45.26 -20.384 -13.078 1 58.12 ? O26 6R1 501 B 1 
HETATM 28 C C28 6R1 . . . D 2 -47.617 -20.598 -13.64 1 57.54 ? C28 6R1 501 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#