data_5K78
#
_model_server_result.job_id            pzra5EJ39bdba-gAZNrMnw 
_model_server_result.datetime_utc      '2024-10-20 00:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":402}' 
#
_entry.id    5K78 
#
_exptl.entry_id    5K78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K78 
_cell.length_a            73.893 
_cell.length_b            142.673 
_cell.length_c            215.131 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
? trimeric 3 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J,K,L,M,GA 1 1 
B,N,O,P,Q,R,HA 2 1 
C,F,G,S,T,U,V,W,X,IA 3 1 
D,H,I,Y,Z,AA,BA,CA,JA 4 1 
E,DA,EA,FA,KA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 O N N 
? 5 T N N 
? 5 Z N N 
? 5 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F C2' A 6 X A 501 1_555 G OP3 G 1 x G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
covale ? covale2 H C2' A 6 Y A 501 1_555 I OP3 G 1 y G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
metalc ? metalc1 A SG CYS 14 A CYS 14 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc2 A NE2 HIS 16 A HIS 16 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A OD2 ASP 45 A ASP 45 1_555 J FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc4 A OD2 ASP 45 A ASP 45 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc5 A OD1 ASN 90 A ASN 90 1_555 J FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc6 A NE2 HIS 180 A HIS 180 1_555 J FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc7 A ND1 HIS 230 A HIS 230 1_555 J FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc8 A NE2 HIS 232 A HIS 232 1_555 K ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc9 B SG CYS 14 B CYS 14 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc10 B NE2 HIS 16 B HIS 16 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc11 B OD2 ASP 45 B ASP 45 1_555 N FE FE2 . B FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc12 B OD1 ASN 90 B ASN 90 1_555 N FE FE2 . B FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc13 B NE2 HIS 180 B HIS 180 1_555 N FE FE2 . B FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc14 B ND1 HIS 230 B HIS 230 1_555 N FE FE2 . B FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc15 B NE2 HIS 232 B HIS 232 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc16 C SG CYS 14 C CYS 14 1_555 T ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc17 C NE2 HIS 16 C HIS 16 1_555 T ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc18 C OD2 ASP 45 C ASP 45 1_555 S FE FE2 . C FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc19 C OD1 ASN 90 C ASN 90 1_555 S FE FE2 . C FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc20 C NE2 HIS 180 C HIS 180 1_555 S FE FE2 . C FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc21 C ND1 HIS 230 C HIS 230 1_555 S FE FE2 . C FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc22 C NE2 HIS 232 C HIS 232 1_555 T ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc23 S FE FE2 . C FE2 401 1_555 G OP2 G 1 x G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc24 T ZN ZN . C ZN 402 1_555 G OP1 G 1 x G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc25 D SG CYS 14 D CYS 14 1_555 Z ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc26 D NE2 HIS 16 D HIS 16 1_555 Z ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc27 D OD2 ASP 45 D ASP 45 1_555 Y FE FE2 . D FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc28 D OD1 ASN 90 D ASN 90 1_555 Y FE FE2 . D FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc29 D NE2 HIS 180 D HIS 180 1_555 Y FE FE2 . D FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc30 D ND1 HIS 230 D HIS 230 1_555 Y FE FE2 . D FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc31 D NE2 HIS 232 D HIS 232 1_555 Z ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc32 Y FE FE2 . D FE2 401 1_555 I OP2 G 1 y G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc33 Z ZN ZN . D ZN 402 1_555 I OP1 G 1 y G 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc34 E SG CYS 14 E CYS 14 1_555 EA ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc35 E NE2 HIS 16 E HIS 16 1_555 EA ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc36 E OD2 ASP 45 E ASP 45 1_555 DA FE FE2 . E FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc37 E OD1 ASN 90 E ASN 90 1_555 DA FE FE2 . E FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc38 E NE2 HIS 180 E HIS 180 1_555 DA FE FE2 . E FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc39 E ND1 HIS 230 E HIS 230 1_555 DA FE FE2 . E FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc40 E NE2 HIS 232 E HIS 232 1_555 EA ZN ZN . E ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5K78 
_atom_sites.fract_transf_matrix[1][1]    0.013533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 FE2 A 1 401 401 FE2 FE2 . 
K 5 ZN A 1 402 402 ZN ZN . 
L 6 SO4 A 1 403 403 SO4 SO4 . 
M 6 SO4 A 1 404 404 SO4 SO4 . 
N 4 FE2 B 1 401 401 FE2 FE2 . 
O 5 ZN B 1 402 402 ZN ZN . 
P 6 SO4 B 1 403 403 SO4 SO4 . 
Q 6 SO4 B 1 404 404 SO4 SO4 . 
R 6 SO4 B 1 405 406 SO4 SO4 . 
S 4 FE2 C 1 401 401 FE2 FE2 . 
T 5 ZN C 1 402 402 ZN ZN . 
U 6 SO4 C 1 403 403 SO4 SO4 . 
V 6 SO4 C 1 404 405 SO4 SO4 . 
W 6 SO4 C 1 405 406 SO4 SO4 . 
X 6 SO4 C 1 406 407 SO4 SO4 . 
Y 4 FE2 D 1 401 401 FE2 FE2 . 
Z 5 ZN D 1 402 402 ZN ZN . 
AA 6 SO4 D 1 403 403 SO4 SO4 . 
BA 6 SO4 D 1 404 404 SO4 SO4 . 
CA 6 SO4 D 1 405 406 SO4 SO4 . 
DA 4 FE2 E 1 401 401 FE2 FE2 . 
EA 5 ZN E 1 402 402 ZN ZN . 
FA 6 SO4 E 1 403 403 SO4 SO4 . 
GA 7 HOH A 1 501 413 HOH HOH . 
GA 7 HOH A 2 502 408 HOH HOH . 
GA 7 HOH A 3 503 407 HOH HOH . 
HA 7 HOH B 1 501 411 HOH HOH . 
IA 7 HOH C 1 501 417 HOH HOH . 
IA 7 HOH C 2 502 413 HOH HOH . 
IA 7 HOH C 3 503 408 HOH HOH . 
IA 7 HOH C 4 504 412 HOH HOH . 
IA 7 HOH C 5 505 422 HOH HOH . 
IA 7 HOH C 6 506 424 HOH HOH . 
IA 7 HOH C 7 507 409 HOH HOH . 
IA 7 HOH C 8 508 415 HOH HOH . 
IA 7 HOH C 9 509 411 HOH HOH . 
IA 7 HOH C 10 510 419 HOH HOH . 
IA 7 HOH C 11 511 416 HOH HOH . 
IA 7 HOH C 12 512 423 HOH HOH . 
JA 7 HOH D 1 501 411 HOH HOH . 
KA 7 HOH E 1 501 418 HOH HOH . 
KA 7 HOH E 2 502 406 HOH HOH . 
KA 7 HOH E 3 503 408 HOH HOH . 
KA 7 HOH E 4 504 407 HOH HOH . 
KA 7 HOH E 5 505 413 HOH HOH . 
KA 7 HOH E 6 506 405 HOH HOH . 
KA 7 HOH E 7 507 416 HOH HOH . 
KA 7 HOH E 8 508 417 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               33.608 
_atom_site.Cartn_y               -53.546 
_atom_site.Cartn_z               -19.27 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        122.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#