data_5K79
#
_model_server_result.job_id            qQIHUQscSVuHKyto9uYu9A 
_model_server_result.datetime_utc      '2025-03-05 18:18:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5K79 
#
_exptl.entry_id    5K79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K79 
_cell.length_a            93.84 
_cell.length_b            74.396 
_cell.length_c            36.499 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 59 A CYS 59 1_555 A SG CYS 79 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 59 B CYS 59 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 227 n n 
C1 C2 PEG sing 228 n n 
C1 H11 PEG sing 229 n n 
C1 H12 PEG sing 230 n n 
O1 HO1 PEG sing 231 n n 
C2 O2 PEG sing 232 n n 
C2 H21 PEG sing 233 n n 
C2 H22 PEG sing 234 n n 
O2 C3 PEG sing 235 n n 
C3 C4 PEG sing 236 n n 
C3 H31 PEG sing 237 n n 
C3 H32 PEG sing 238 n n 
C4 O4 PEG sing 239 n n 
C4 H41 PEG sing 240 n n 
C4 H42 PEG sing 241 n n 
O4 HO4 PEG sing 242 n n 
#
_atom_sites.entry_id                     5K79 
_atom_sites.fract_transf_matrix[1][1]    0.010656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027398 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 201 109 PEG PEG . 
D 2 PEG A 1 202 110 PEG PEG . 
E 3 EDO B 1 201 111 EDO EDO . 
F 4 HOH A 1 301 274 HOH HOH . 
F 4 HOH A 2 302 310 HOH HOH . 
F 4 HOH A 3 303 189 HOH HOH . 
F 4 HOH A 4 304 287 HOH HOH . 
F 4 HOH A 5 305 229 HOH HOH . 
F 4 HOH A 6 306 239 HOH HOH . 
F 4 HOH A 7 307 275 HOH HOH . 
F 4 HOH A 8 308 168 HOH HOH . 
F 4 HOH A 9 309 260 HOH HOH . 
F 4 HOH A 10 310 195 HOH HOH . 
F 4 HOH A 11 311 240 HOH HOH . 
F 4 HOH A 12 312 172 HOH HOH . 
F 4 HOH A 13 313 289 HOH HOH . 
F 4 HOH A 14 314 255 HOH HOH . 
F 4 HOH A 15 315 294 HOH HOH . 
F 4 HOH A 16 316 167 HOH HOH . 
F 4 HOH A 17 317 170 HOH HOH . 
F 4 HOH A 18 318 217 HOH HOH . 
F 4 HOH A 19 319 179 HOH HOH . 
F 4 HOH A 20 320 271 HOH HOH . 
F 4 HOH A 21 321 242 HOH HOH . 
F 4 HOH A 22 322 317 HOH HOH . 
F 4 HOH A 23 323 113 HOH HOH . 
F 4 HOH A 24 324 164 HOH HOH . 
F 4 HOH A 25 325 218 HOH HOH . 
F 4 HOH A 26 326 173 HOH HOH . 
F 4 HOH A 27 327 270 HOH HOH . 
F 4 HOH A 28 328 177 HOH HOH . 
F 4 HOH A 29 329 115 HOH HOH . 
F 4 HOH A 30 330 284 HOH HOH . 
F 4 HOH A 31 331 273 HOH HOH . 
F 4 HOH A 32 332 152 HOH HOH . 
F 4 HOH A 33 333 279 HOH HOH . 
F 4 HOH A 34 334 219 HOH HOH . 
F 4 HOH A 35 335 112 HOH HOH . 
F 4 HOH A 36 336 278 HOH HOH . 
F 4 HOH A 37 337 200 HOH HOH . 
F 4 HOH A 38 338 121 HOH HOH . 
F 4 HOH A 39 339 169 HOH HOH . 
F 4 HOH A 40 340 117 HOH HOH . 
F 4 HOH A 41 341 129 HOH HOH . 
F 4 HOH A 42 342 175 HOH HOH . 
F 4 HOH A 43 343 222 HOH HOH . 
F 4 HOH A 44 344 157 HOH HOH . 
F 4 HOH A 45 345 116 HOH HOH . 
F 4 HOH A 46 346 178 HOH HOH . 
F 4 HOH A 47 347 171 HOH HOH . 
F 4 HOH A 48 348 205 HOH HOH . 
F 4 HOH A 49 349 176 HOH HOH . 
F 4 HOH A 50 350 254 HOH HOH . 
F 4 HOH A 51 351 312 HOH HOH . 
F 4 HOH A 52 352 225 HOH HOH . 
F 4 HOH A 53 353 131 HOH HOH . 
F 4 HOH A 54 354 266 HOH HOH . 
F 4 HOH A 55 355 226 HOH HOH . 
F 4 HOH A 56 356 120 HOH HOH . 
F 4 HOH A 57 357 215 HOH HOH . 
F 4 HOH A 58 358 321 HOH HOH . 
F 4 HOH A 59 359 122 HOH HOH . 
F 4 HOH A 60 360 123 HOH HOH . 
F 4 HOH A 61 361 118 HOH HOH . 
F 4 HOH A 62 362 235 HOH HOH . 
F 4 HOH A 63 363 127 HOH HOH . 
F 4 HOH A 64 364 125 HOH HOH . 
F 4 HOH A 65 365 198 HOH HOH . 
F 4 HOH A 66 366 234 HOH HOH . 
F 4 HOH A 67 367 174 HOH HOH . 
F 4 HOH A 68 368 119 HOH HOH . 
F 4 HOH A 69 369 130 HOH HOH . 
F 4 HOH A 70 370 166 HOH HOH . 
F 4 HOH A 71 371 114 HOH HOH . 
F 4 HOH A 72 372 128 HOH HOH . 
F 4 HOH A 73 373 126 HOH HOH . 
F 4 HOH A 74 374 292 HOH HOH . 
F 4 HOH A 75 375 190 HOH HOH . 
F 4 HOH A 76 376 277 HOH HOH . 
F 4 HOH A 77 377 328 HOH HOH . 
F 4 HOH A 78 378 303 HOH HOH . 
F 4 HOH A 79 379 297 HOH HOH . 
F 4 HOH A 80 380 295 HOH HOH . 
F 4 HOH A 81 381 315 HOH HOH . 
F 4 HOH A 82 382 298 HOH HOH . 
F 4 HOH A 83 383 244 HOH HOH . 
F 4 HOH A 84 384 221 HOH HOH . 
F 4 HOH A 85 385 307 HOH HOH . 
F 4 HOH A 86 386 264 HOH HOH . 
F 4 HOH A 87 387 314 HOH HOH . 
F 4 HOH A 88 388 257 HOH HOH . 
F 4 HOH A 89 389 290 HOH HOH . 
F 4 HOH A 90 390 223 HOH HOH . 
F 4 HOH A 91 391 281 HOH HOH . 
F 4 HOH A 92 392 300 HOH HOH . 
F 4 HOH A 93 393 241 HOH HOH . 
F 4 HOH A 94 394 203 HOH HOH . 
F 4 HOH A 95 395 204 HOH HOH . 
F 4 HOH A 96 396 220 HOH HOH . 
F 4 HOH A 97 397 324 HOH HOH . 
F 4 HOH A 98 398 165 HOH HOH . 
F 4 HOH A 99 399 227 HOH HOH . 
F 4 HOH A 100 400 224 HOH HOH . 
F 4 HOH A 101 401 202 HOH HOH . 
F 4 HOH A 102 402 206 HOH HOH . 
F 4 HOH A 103 403 238 HOH HOH . 
F 4 HOH A 104 404 304 HOH HOH . 
F 4 HOH A 105 405 201 HOH HOH . 
G 4 HOH B 1 301 283 HOH HOH . 
G 4 HOH B 2 302 207 HOH HOH . 
G 4 HOH B 3 303 153 HOH HOH . 
G 4 HOH B 4 304 261 HOH HOH . 
G 4 HOH B 5 305 280 HOH HOH . 
G 4 HOH B 6 306 253 HOH HOH . 
G 4 HOH B 7 307 245 HOH HOH . 
G 4 HOH B 8 308 135 HOH HOH . 
G 4 HOH B 9 309 180 HOH HOH . 
G 4 HOH B 10 310 237 HOH HOH . 
G 4 HOH B 11 311 251 HOH HOH . 
G 4 HOH B 12 312 144 HOH HOH . 
G 4 HOH B 13 313 149 HOH HOH . 
G 4 HOH B 14 314 160 HOH HOH . 
G 4 HOH B 15 315 141 HOH HOH . 
G 4 HOH B 16 316 320 HOH HOH . 
G 4 HOH B 17 317 199 HOH HOH . 
G 4 HOH B 18 318 142 HOH HOH . 
G 4 HOH B 19 319 258 HOH HOH . 
G 4 HOH B 20 320 276 HOH HOH . 
G 4 HOH B 21 321 267 HOH HOH . 
G 4 HOH B 22 322 196 HOH HOH . 
G 4 HOH B 23 323 140 HOH HOH . 
G 4 HOH B 24 324 137 HOH HOH . 
G 4 HOH B 25 325 233 HOH HOH . 
G 4 HOH B 26 326 191 HOH HOH . 
G 4 HOH B 27 327 265 HOH HOH . 
G 4 HOH B 28 328 246 HOH HOH . 
G 4 HOH B 29 329 236 HOH HOH . 
G 4 HOH B 30 330 138 HOH HOH . 
G 4 HOH B 31 331 209 HOH HOH . 
G 4 HOH B 32 332 154 HOH HOH . 
G 4 HOH B 33 333 249 HOH HOH . 
G 4 HOH B 34 334 216 HOH HOH . 
G 4 HOH B 35 335 150 HOH HOH . 
G 4 HOH B 36 336 158 HOH HOH . 
G 4 HOH B 37 337 211 HOH HOH . 
G 4 HOH B 38 338 186 HOH HOH . 
G 4 HOH B 39 339 145 HOH HOH . 
G 4 HOH B 40 340 247 HOH HOH . 
G 4 HOH B 41 341 187 HOH HOH . 
G 4 HOH B 42 342 159 HOH HOH . 
G 4 HOH B 43 343 259 HOH HOH . 
G 4 HOH B 44 344 151 HOH HOH . 
G 4 HOH B 45 345 134 HOH HOH . 
G 4 HOH B 46 346 136 HOH HOH . 
G 4 HOH B 47 347 311 HOH HOH . 
G 4 HOH B 48 348 262 HOH HOH . 
G 4 HOH B 49 349 124 HOH HOH . 
G 4 HOH B 50 350 197 HOH HOH . 
G 4 HOH B 51 351 252 HOH HOH . 
G 4 HOH B 52 352 306 HOH HOH . 
G 4 HOH B 53 353 156 HOH HOH . 
G 4 HOH B 54 354 184 HOH HOH . 
G 4 HOH B 55 355 188 HOH HOH . 
G 4 HOH B 56 356 288 HOH HOH . 
G 4 HOH B 57 357 139 HOH HOH . 
G 4 HOH B 58 358 155 HOH HOH . 
G 4 HOH B 59 359 194 HOH HOH . 
G 4 HOH B 60 360 148 HOH HOH . 
G 4 HOH B 61 361 268 HOH HOH . 
G 4 HOH B 62 362 302 HOH HOH . 
G 4 HOH B 63 363 133 HOH HOH . 
G 4 HOH B 64 364 322 HOH HOH . 
G 4 HOH B 65 365 299 HOH HOH . 
G 4 HOH B 66 366 291 HOH HOH . 
G 4 HOH B 67 367 143 HOH HOH . 
G 4 HOH B 68 368 162 HOH HOH . 
G 4 HOH B 69 369 305 HOH HOH . 
G 4 HOH B 70 370 282 HOH HOH . 
G 4 HOH B 71 371 163 HOH HOH . 
G 4 HOH B 72 372 132 HOH HOH . 
G 4 HOH B 73 373 147 HOH HOH . 
G 4 HOH B 74 374 319 HOH HOH . 
G 4 HOH B 75 375 146 HOH HOH . 
G 4 HOH B 76 376 181 HOH HOH . 
G 4 HOH B 77 377 250 HOH HOH . 
G 4 HOH B 78 378 183 HOH HOH . 
G 4 HOH B 79 379 301 HOH HOH . 
G 4 HOH B 80 380 272 HOH HOH . 
G 4 HOH B 81 381 213 HOH HOH . 
G 4 HOH B 82 382 212 HOH HOH . 
G 4 HOH B 83 383 323 HOH HOH . 
G 4 HOH B 84 384 182 HOH HOH . 
G 4 HOH B 85 385 243 HOH HOH . 
G 4 HOH B 86 386 318 HOH HOH . 
G 4 HOH B 87 387 214 HOH HOH . 
G 4 HOH B 88 388 327 HOH HOH . 
G 4 HOH B 89 389 208 HOH HOH . 
G 4 HOH B 90 390 286 HOH HOH . 
G 4 HOH B 91 391 316 HOH HOH . 
G 4 HOH B 92 392 231 HOH HOH . 
G 4 HOH B 93 393 296 HOH HOH . 
G 4 HOH B 94 394 193 HOH HOH . 
G 4 HOH B 95 395 326 HOH HOH . 
G 4 HOH B 96 396 248 HOH HOH . 
G 4 HOH B 97 397 263 HOH HOH . 
G 4 HOH B 98 398 285 HOH HOH . 
G 4 HOH B 99 399 256 HOH HOH . 
G 4 HOH B 100 400 192 HOH HOH . 
G 4 HOH B 101 401 230 HOH HOH . 
G 4 HOH B 102 402 185 HOH HOH . 
G 4 HOH B 103 403 325 HOH HOH . 
G 4 HOH B 104 404 161 HOH HOH . 
G 4 HOH B 105 405 308 HOH HOH . 
G 4 HOH B 106 406 210 HOH HOH . 
G 4 HOH B 107 407 309 HOH HOH . 
G 4 HOH B 108 408 313 HOH HOH . 
G 4 HOH B 109 409 269 HOH HOH . 
G 4 HOH B 110 410 293 HOH HOH . 
G 4 HOH B 111 411 232 HOH HOH . 
G 4 HOH B 112 412 228 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 2 -18.048 29.647 0.769 1 34.71 ? C1 PEG 202 A 1 
HETATM 2 O O1 PEG . . . D 2 -18.397 29.866 -0.58 1 37.75 ? O1 PEG 202 A 1 
HETATM 3 C C2 PEG . . . D 2 -18.629 30.786 1.56 1 31.29 ? C2 PEG 202 A 1 
HETATM 4 O O2 PEG . . . D 2 -17.95 31.146 2.73 1 35.32 ? O2 PEG 202 A 1 
HETATM 5 C C3 PEG . . . D 2 -18.456 32.372 3.211 1 39.79 ? C3 PEG 202 A 1 
HETATM 6 C C4 PEG . . . D 2 -17.525 33.549 2.978 1 40.51 ? C4 PEG 202 A 1 
HETATM 7 O O4 PEG . . . D 2 -18.134 34.817 2.649 1 39.98 ? O4 PEG 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           7 
#