data_5K7I # _model_server_result.job_id pH-hyPLpDXFaS7FK-swKZA _model_server_result.datetime_utc '2024-11-22 21:20:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5K7I # _exptl.entry_id 5K7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{a}~{R},7~{a}~{S})-1-methyl-5-[4-[[5-(oxan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]amino]cyclohexyl]-3,3~{a},4,6,7,7~{a}-hexahydropyrrolo[3,2-c]pyridin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K7I _cell.length_a 87.54 _cell.length_b 110.53 _cell.length_c 142.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale4 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale5 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? # _chem_comp.formula 'C25 H36 N6 O2' _chem_comp.formula_weight 452.592 _chem_comp.id 6QZ _chem_comp.mon_nstd_flag . _chem_comp.name (3~{a}~{R},7~{a}~{S})-1-methyl-5-[4-[[5-(oxan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]amino]cyclohexyl]-3,3~{a},4,6,7,7~{a}-hexahydropyrrolo[3,2-c]pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 6QZ sing 1 n n C2 C3 6QZ sing 2 n n O C1 6QZ doub 3 n n C1 N 6QZ sing 4 n n C3 C7 6QZ sing 5 n n C3 C4 6QZ sing 6 n n N C4 6QZ sing 7 n n N C 6QZ sing 8 n n C7 N1 6QZ sing 9 n n C4 C5 6QZ sing 10 n n N1 C8 6QZ sing 11 n n N1 C6 6QZ sing 12 n n O1 C22 6QZ sing 13 n n O1 C23 6QZ sing 14 n n C22 C21 6QZ sing 15 n n C8 C13 6QZ sing 16 n n C8 C9 6QZ sing 17 n n C23 C24 6QZ sing 18 n n C5 C6 6QZ sing 19 n n C13 C12 6QZ sing 20 n n C12 C11 6QZ sing 21 n n C21 C20 6QZ sing 22 n n C9 C10 6QZ sing 23 n n C24 C20 6QZ sing 24 n n C10 C11 6QZ sing 25 n n C20 C18 6QZ sing 26 n n C11 N2 6QZ sing 27 n n N2 C14 6QZ sing 28 n n C18 C17 6QZ sing 29 n y C18 C19 6QZ doub 30 n y C14 C17 6QZ doub 31 n y C14 N3 6QZ sing 32 n y C17 C16 6QZ sing 33 n y C19 N5 6QZ sing 34 n y N3 C15 6QZ doub 35 n y C16 N5 6QZ sing 36 n y C16 N4 6QZ doub 37 n y C15 N4 6QZ sing 38 n y C2 H1 6QZ sing 39 n n C2 H2 6QZ sing 40 n n C3 H3 6QZ sing 41 n n C7 H4 6QZ sing 42 n n C7 H5 6QZ sing 43 n n C8 H6 6QZ sing 44 n n C9 H7 6QZ sing 45 n n C9 H8 6QZ sing 46 n n C10 H9 6QZ sing 47 n n C10 H10 6QZ sing 48 n n C11 H11 6QZ sing 49 n n C12 H12 6QZ sing 50 n n C12 H13 6QZ sing 51 n n C13 H14 6QZ sing 52 n n C13 H15 6QZ sing 53 n n C15 H16 6QZ sing 54 n n C19 H17 6QZ sing 55 n n C20 H18 6QZ sing 56 n n C21 H19 6QZ sing 57 n n C21 H20 6QZ sing 58 n n C22 H21 6QZ sing 59 n n C22 H22 6QZ sing 60 n n C24 H23 6QZ sing 61 n n C24 H24 6QZ sing 62 n n C6 H26 6QZ sing 63 n n C6 H27 6QZ sing 64 n n C5 H28 6QZ sing 65 n n C5 H29 6QZ sing 66 n n C4 H30 6QZ sing 67 n n C H31 6QZ sing 68 n n C H32 6QZ sing 69 n n C H33 6QZ sing 70 n n N2 H34 6QZ sing 71 n n N5 H35 6QZ sing 72 n n C23 H36 6QZ sing 73 n n C23 H37 6QZ sing 74 n n # _atom_sites.entry_id 5K7I _atom_sites.fract_transf_matrix[1][1] 0.011423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6QZ A 1 501 1 6QZ INH . D 3 SO4 B 1 501 1 SO4 SO4 . E 2 6QZ B 1 502 2 6QZ INH . F 4 HOH A 1 601 45 HOH HOH . F 4 HOH A 2 602 1 HOH HOH . F 4 HOH A 3 603 46 HOH HOH . F 4 HOH A 4 604 28 HOH HOH . F 4 HOH A 5 605 4 HOH HOH . F 4 HOH A 6 606 44 HOH HOH . F 4 HOH A 7 607 29 HOH HOH . F 4 HOH A 8 608 52 HOH HOH . F 4 HOH A 9 609 22 HOH HOH . F 4 HOH A 10 610 51 HOH HOH . F 4 HOH A 11 611 55 HOH HOH . F 4 HOH A 12 612 50 HOH HOH . F 4 HOH A 13 613 43 HOH HOH . F 4 HOH A 14 614 30 HOH HOH . F 4 HOH A 15 615 54 HOH HOH . F 4 HOH A 16 616 34 HOH HOH . F 4 HOH A 17 617 60 HOH HOH . F 4 HOH A 18 618 47 HOH HOH . F 4 HOH A 19 619 27 HOH HOH . F 4 HOH A 20 620 15 HOH HOH . F 4 HOH A 21 621 61 HOH HOH . F 4 HOH A 22 622 3 HOH HOH . F 4 HOH A 23 623 56 HOH HOH . F 4 HOH A 24 624 16 HOH HOH . F 4 HOH A 25 625 62 HOH HOH . F 4 HOH A 26 626 58 HOH HOH . F 4 HOH A 27 627 69 HOH HOH . F 4 HOH A 28 628 57 HOH HOH . F 4 HOH A 29 629 63 HOH HOH . F 4 HOH A 30 630 59 HOH HOH . F 4 HOH A 31 631 49 HOH HOH . F 4 HOH A 32 632 9 HOH HOH . G 4 HOH B 1 601 32 HOH HOH . G 4 HOH B 2 602 25 HOH HOH . G 4 HOH B 3 603 13 HOH HOH . G 4 HOH B 4 604 38 HOH HOH . G 4 HOH B 5 605 37 HOH HOH . G 4 HOH B 6 606 10 HOH HOH . G 4 HOH B 7 607 67 HOH HOH . G 4 HOH B 8 608 23 HOH HOH . G 4 HOH B 9 609 74 HOH HOH . G 4 HOH B 10 610 20 HOH HOH . G 4 HOH B 11 611 31 HOH HOH . G 4 HOH B 12 612 41 HOH HOH . G 4 HOH B 13 613 35 HOH HOH . G 4 HOH B 14 614 78 HOH HOH . G 4 HOH B 15 615 33 HOH HOH . G 4 HOH B 16 616 8 HOH HOH . G 4 HOH B 17 617 68 HOH HOH . G 4 HOH B 18 618 75 HOH HOH . G 4 HOH B 19 619 66 HOH HOH . G 4 HOH B 20 620 42 HOH HOH . G 4 HOH B 21 621 48 HOH HOH . G 4 HOH B 22 622 2 HOH HOH . G 4 HOH B 23 623 5 HOH HOH . G 4 HOH B 24 624 6 HOH HOH . G 4 HOH B 25 625 26 HOH HOH . G 4 HOH B 26 626 79 HOH HOH . G 4 HOH B 27 627 65 HOH HOH . G 4 HOH B 28 628 71 HOH HOH . G 4 HOH B 29 629 70 HOH HOH . G 4 HOH B 30 630 80 HOH HOH . G 4 HOH B 31 631 14 HOH HOH . G 4 HOH B 32 632 12 HOH HOH . G 4 HOH B 33 633 73 HOH HOH . G 4 HOH B 34 634 64 HOH HOH . G 4 HOH B 35 635 7 HOH HOH . G 4 HOH B 36 636 24 HOH HOH . G 4 HOH B 37 637 77 HOH HOH . G 4 HOH B 38 638 39 HOH HOH . G 4 HOH B 39 639 76 HOH HOH . G 4 HOH B 40 640 36 HOH HOH . G 4 HOH B 41 641 40 HOH HOH . G 4 HOH B 42 642 21 HOH HOH . G 4 HOH B 43 643 11 HOH HOH . G 4 HOH B 44 644 53 HOH HOH . G 4 HOH B 45 645 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6QZ . . . C 2 -26.258 -41.6 -16.343 1 81.89 ? C1 6QZ 501 A 1 HETATM 2 C C2 6QZ . . . C 2 -25.739 -40.336 -16.975 1 79.29 ? C2 6QZ 501 A 1 HETATM 3 C C3 6QZ . . . C 2 -26.093 -39.21 -16.001 1 76.94 ? C3 6QZ 501 A 1 HETATM 4 C C7 6QZ . . . C 2 -24.964 -38.515 -15.247 1 74.28 ? C7 6QZ 501 A 1 HETATM 5 C C8 6QZ . . . C 2 -23.116 -38.979 -13.668 1 68.04 ? C8 6QZ 501 A 1 HETATM 6 C C9 6QZ . . . C 2 -22.911 -38.03 -12.475 1 66 ? C9 6QZ 501 A 1 HETATM 7 C C10 6QZ . . . C 2 -21.422 -37.868 -12.104 1 66.67 ? C10 6QZ 501 A 1 HETATM 8 C C11 6QZ . . . C 2 -20.724 -39.217 -11.936 1 65.43 ? C11 6QZ 501 A 1 HETATM 9 C C12 6QZ . . . C 2 -20.858 -40.042 -13.204 1 66.69 ? C12 6QZ 501 A 1 HETATM 10 C C13 6QZ . . . C 2 -22.331 -40.288 -13.543 1 67.68 ? C13 6QZ 501 A 1 HETATM 11 C C14 6QZ . . . C 2 -18.903 -39.012 -10.264 1 60.58 ? C14 6QZ 501 A 1 HETATM 12 C C15 6QZ . . . C 2 -19.46 -38.822 -8.045 1 55.24 ? C15 6QZ 501 A 1 HETATM 13 C C16 6QZ . . . C 2 -17.265 -38.699 -8.531 1 57 ? C16 6QZ 501 A 1 HETATM 14 C C19 6QZ . . . C 2 -15.275 -38.632 -9.509 1 56.56 ? C19 6QZ 501 A 1 HETATM 15 C C20 6QZ . . . C 2 -15.852 -38.923 -11.997 1 60.07 ? C20 6QZ 501 A 1 HETATM 16 C C21 6QZ . . . C 2 -16.221 -40.282 -12.609 1 58.36 ? C21 6QZ 501 A 1 HETATM 17 C C22 6QZ . . . C 2 -15.722 -40.364 -14.03 1 56.69 ? C22 6QZ 501 A 1 HETATM 18 C C24 6QZ . . . C 2 -14.345 -38.652 -12.19 1 61.23 ? C24 6QZ 501 A 1 HETATM 19 O O 6QZ . . . C 2 -26.046 -42.741 -16.725 1 84.44 ? O 6QZ 501 A 1 HETATM 20 N N1 6QZ . . . C 2 -24.491 -39.304 -14.101 1 71.62 ? N1 6QZ 501 A 1 HETATM 21 C C6 6QZ . . . C 2 -25.517 -39.29 -13.04 1 72.62 ? C6 6QZ 501 A 1 HETATM 22 C C5 6QZ . . . C 2 -26.947 -39.392 -13.586 1 74.52 ? C5 6QZ 501 A 1 HETATM 23 C C4 6QZ . . . C 2 -27.142 -39.803 -15.046 1 78.16 ? C4 6QZ 501 A 1 HETATM 24 N N 6QZ . . . C 2 -27.011 -41.264 -15.285 1 81.46 ? N 6QZ 501 A 1 HETATM 25 C C 6QZ . . . C 2 -27.699 -42.251 -14.452 1 80.01 ? C 6QZ 501 A 1 HETATM 26 N N2 6QZ . . . C 2 -19.319 -39.066 -11.548 1 63.52 ? N2 6QZ 501 A 1 HETATM 27 C C17 6QZ . . . C 2 -17.491 -38.882 -9.909 1 58.82 ? C17 6QZ 501 A 1 HETATM 28 C C18 6QZ . . . C 2 -16.164 -38.847 -10.523 1 59.21 ? C18 6QZ 501 A 1 HETATM 29 N N5 6QZ . . . C 2 -15.926 -38.561 -8.31 1 58.4 ? N5 6QZ 501 A 1 HETATM 30 N N4 6QZ . . . C 2 -18.215 -38.666 -7.583 1 54.35 ? N4 6QZ 501 A 1 HETATM 31 N N3 6QZ . . . C 2 -19.865 -38.996 -9.307 1 58.72 ? N3 6QZ 501 A 1 HETATM 32 C C23 6QZ . . . C 2 -13.955 -38.86 -13.635 1 61.46 ? C23 6QZ 501 A 1 HETATM 33 O O1 6QZ . . . C 2 -14.309 -40.173 -14.086 1 59.86 ? O1 6QZ 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #