data_5K8I # _model_server_result.job_id 2tv2_aP92U8yGQTZk3mZbg _model_server_result.datetime_utc '2024-11-29 13:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 5K8I # _exptl.entry_id 5K8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.31 _cell.angle_gamma 90 _cell.entry_id 5K8I _cell.length_a 63.51 _cell.length_b 53.17 _cell.length_c 65.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 195 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A OG1 THR 38 A THR 201 1_555 E MN MN . A MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A OE2 GLU 123 A GLU 286 1_555 E MN MN . A MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 B O3G ATP . A ATP 701 1_555 E MN MN . A MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc5 B O2B ATP . A ATP 701 1_555 E MN MN . A MN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 D MN MN . A MN 703 1_555 F O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc7 D MN MN . A MN 703 1_555 F O HOH . A HOH 836 2_957 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 D MN MN . A MN 703 1_555 F O HOH . A HOH 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc9 D MN MN . A MN 703 1_555 F O HOH . A HOH 1035 2_957 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc10 E MN MN . A MN 704 1_555 F O HOH . A HOH 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 E MN MN . A MN 704 1_555 F O HOH . A HOH 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K8I _atom_sites.fract_transf_matrix[1][1] 0.015746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 701 1 ATP ATP . C 3 CL A 1 702 1 CL CL . D 4 MN A 1 703 1 MN MN . E 4 MN A 1 704 2 MN MN . F 5 HOH A 1 801 224 HOH HOH . F 5 HOH A 2 802 232 HOH HOH . F 5 HOH A 3 803 254 HOH HOH . F 5 HOH A 4 804 189 HOH HOH . F 5 HOH A 5 805 97 HOH HOH . F 5 HOH A 6 806 238 HOH HOH . F 5 HOH A 7 807 206 HOH HOH . F 5 HOH A 8 808 56 HOH HOH . F 5 HOH A 9 809 49 HOH HOH . F 5 HOH A 10 810 113 HOH HOH . F 5 HOH A 11 811 246 HOH HOH . F 5 HOH A 12 812 226 HOH HOH . F 5 HOH A 13 813 88 HOH HOH . F 5 HOH A 14 814 222 HOH HOH . F 5 HOH A 15 815 24 HOH HOH . F 5 HOH A 16 816 110 HOH HOH . F 5 HOH A 17 817 45 HOH HOH . F 5 HOH A 18 818 32 HOH HOH . F 5 HOH A 19 819 151 HOH HOH . F 5 HOH A 20 820 87 HOH HOH . F 5 HOH A 21 821 253 HOH HOH . F 5 HOH A 22 822 236 HOH HOH . F 5 HOH A 23 823 37 HOH HOH . F 5 HOH A 24 824 14 HOH HOH . F 5 HOH A 25 825 9 HOH HOH . F 5 HOH A 26 826 123 HOH HOH . F 5 HOH A 27 827 178 HOH HOH . F 5 HOH A 28 828 85 HOH HOH . F 5 HOH A 29 829 156 HOH HOH . F 5 HOH A 30 830 138 HOH HOH . F 5 HOH A 31 831 30 HOH HOH . F 5 HOH A 32 832 55 HOH HOH . F 5 HOH A 33 833 172 HOH HOH . F 5 HOH A 34 834 109 HOH HOH . F 5 HOH A 35 835 81 HOH HOH . F 5 HOH A 36 836 1 HOH HOH . F 5 HOH A 37 837 7 HOH HOH . F 5 HOH A 38 838 26 HOH HOH . F 5 HOH A 39 839 115 HOH HOH . F 5 HOH A 40 840 133 HOH HOH . F 5 HOH A 41 841 25 HOH HOH . F 5 HOH A 42 842 13 HOH HOH . F 5 HOH A 43 843 184 HOH HOH . F 5 HOH A 44 844 148 HOH HOH . F 5 HOH A 45 845 126 HOH HOH . F 5 HOH A 46 846 102 HOH HOH . F 5 HOH A 47 847 153 HOH HOH . F 5 HOH A 48 848 84 HOH HOH . F 5 HOH A 49 849 29 HOH HOH . F 5 HOH A 50 850 4 HOH HOH . F 5 HOH A 51 851 72 HOH HOH . F 5 HOH A 52 852 199 HOH HOH . F 5 HOH A 53 853 145 HOH HOH . F 5 HOH A 54 854 139 HOH HOH . F 5 HOH A 55 855 111 HOH HOH . F 5 HOH A 56 856 157 HOH HOH . F 5 HOH A 57 857 105 HOH HOH . F 5 HOH A 58 858 122 HOH HOH . F 5 HOH A 59 859 161 HOH HOH . F 5 HOH A 60 860 77 HOH HOH . F 5 HOH A 61 861 107 HOH HOH . F 5 HOH A 62 862 82 HOH HOH . F 5 HOH A 63 863 74 HOH HOH . F 5 HOH A 64 864 165 HOH HOH . F 5 HOH A 65 865 6 HOH HOH . F 5 HOH A 66 866 118 HOH HOH . F 5 HOH A 67 867 68 HOH HOH . F 5 HOH A 68 868 116 HOH HOH . F 5 HOH A 69 869 176 HOH HOH . F 5 HOH A 70 870 83 HOH HOH . F 5 HOH A 71 871 99 HOH HOH . F 5 HOH A 72 872 28 HOH HOH . F 5 HOH A 73 873 183 HOH HOH . F 5 HOH A 74 874 69 HOH HOH . F 5 HOH A 75 875 19 HOH HOH . F 5 HOH A 76 876 40 HOH HOH . F 5 HOH A 77 877 200 HOH HOH . F 5 HOH A 78 878 27 HOH HOH . F 5 HOH A 79 879 17 HOH HOH . F 5 HOH A 80 880 100 HOH HOH . F 5 HOH A 81 881 41 HOH HOH . F 5 HOH A 82 882 195 HOH HOH . F 5 HOH A 83 883 181 HOH HOH . F 5 HOH A 84 884 36 HOH HOH . F 5 HOH A 85 885 193 HOH HOH . F 5 HOH A 86 886 11 HOH HOH . F 5 HOH A 87 887 95 HOH HOH . F 5 HOH A 88 888 22 HOH HOH . F 5 HOH A 89 889 218 HOH HOH . F 5 HOH A 90 890 220 HOH HOH . F 5 HOH A 91 891 65 HOH HOH . F 5 HOH A 92 892 59 HOH HOH . F 5 HOH A 93 893 192 HOH HOH . F 5 HOH A 94 894 251 HOH HOH . F 5 HOH A 95 895 51 HOH HOH . F 5 HOH A 96 896 147 HOH HOH . F 5 HOH A 97 897 2 HOH HOH . F 5 HOH A 98 898 101 HOH HOH . F 5 HOH A 99 899 38 HOH HOH . F 5 HOH A 100 900 66 HOH HOH . F 5 HOH A 101 901 62 HOH HOH . F 5 HOH A 102 902 80 HOH HOH . F 5 HOH A 103 903 223 HOH HOH . F 5 HOH A 104 904 104 HOH HOH . F 5 HOH A 105 905 39 HOH HOH . F 5 HOH A 106 906 132 HOH HOH . F 5 HOH A 107 907 21 HOH HOH . F 5 HOH A 108 908 136 HOH HOH . F 5 HOH A 109 909 197 HOH HOH . F 5 HOH A 110 910 240 HOH HOH . F 5 HOH A 111 911 89 HOH HOH . F 5 HOH A 112 912 180 HOH HOH . F 5 HOH A 113 913 58 HOH HOH . F 5 HOH A 114 914 198 HOH HOH . F 5 HOH A 115 915 203 HOH HOH . F 5 HOH A 116 916 108 HOH HOH . F 5 HOH A 117 917 196 HOH HOH . F 5 HOH A 118 918 8 HOH HOH . F 5 HOH A 119 919 250 HOH HOH . F 5 HOH A 120 920 141 HOH HOH . F 5 HOH A 121 921 42 HOH HOH . F 5 HOH A 122 922 106 HOH HOH . F 5 HOH A 123 923 76 HOH HOH . F 5 HOH A 124 924 48 HOH HOH . F 5 HOH A 125 925 129 HOH HOH . F 5 HOH A 126 926 154 HOH HOH . F 5 HOH A 127 927 194 HOH HOH . F 5 HOH A 128 928 167 HOH HOH . F 5 HOH A 129 929 124 HOH HOH . F 5 HOH A 130 930 168 HOH HOH . F 5 HOH A 131 931 228 HOH HOH . F 5 HOH A 132 932 43 HOH HOH . F 5 HOH A 133 933 18 HOH HOH . F 5 HOH A 134 934 130 HOH HOH . F 5 HOH A 135 935 54 HOH HOH . F 5 HOH A 136 936 71 HOH HOH . F 5 HOH A 137 937 201 HOH HOH . F 5 HOH A 138 938 112 HOH HOH . F 5 HOH A 139 939 121 HOH HOH . F 5 HOH A 140 940 158 HOH HOH . F 5 HOH A 141 941 44 HOH HOH . F 5 HOH A 142 942 73 HOH HOH . F 5 HOH A 143 943 50 HOH HOH . F 5 HOH A 144 944 249 HOH HOH . F 5 HOH A 145 945 125 HOH HOH . F 5 HOH A 146 946 5 HOH HOH . F 5 HOH A 147 947 144 HOH HOH . F 5 HOH A 148 948 61 HOH HOH . F 5 HOH A 149 949 35 HOH HOH . F 5 HOH A 150 950 15 HOH HOH . F 5 HOH A 151 951 219 HOH HOH . F 5 HOH A 152 952 60 HOH HOH . F 5 HOH A 153 953 160 HOH HOH . F 5 HOH A 154 954 10 HOH HOH . F 5 HOH A 155 955 75 HOH HOH . F 5 HOH A 156 956 241 HOH HOH . F 5 HOH A 157 957 78 HOH HOH . F 5 HOH A 158 958 53 HOH HOH . F 5 HOH A 159 959 93 HOH HOH . F 5 HOH A 160 960 31 HOH HOH . F 5 HOH A 161 961 247 HOH HOH . F 5 HOH A 162 962 33 HOH HOH . F 5 HOH A 163 963 12 HOH HOH . F 5 HOH A 164 964 137 HOH HOH . F 5 HOH A 165 965 207 HOH HOH . F 5 HOH A 166 966 63 HOH HOH . F 5 HOH A 167 967 23 HOH HOH . F 5 HOH A 168 968 252 HOH HOH . F 5 HOH A 169 969 237 HOH HOH . F 5 HOH A 170 970 233 HOH HOH . F 5 HOH A 171 971 163 HOH HOH . F 5 HOH A 172 972 3 HOH HOH . F 5 HOH A 173 973 191 HOH HOH . F 5 HOH A 174 974 212 HOH HOH . F 5 HOH A 175 975 64 HOH HOH . F 5 HOH A 176 976 142 HOH HOH . F 5 HOH A 177 977 135 HOH HOH . F 5 HOH A 178 978 98 HOH HOH . F 5 HOH A 179 979 114 HOH HOH . F 5 HOH A 180 980 131 HOH HOH . F 5 HOH A 181 981 255 HOH HOH . F 5 HOH A 182 982 128 HOH HOH . F 5 HOH A 183 983 235 HOH HOH . F 5 HOH A 184 984 16 HOH HOH . F 5 HOH A 185 985 79 HOH HOH . F 5 HOH A 186 986 213 HOH HOH . F 5 HOH A 187 987 90 HOH HOH . F 5 HOH A 188 988 173 HOH HOH . F 5 HOH A 189 989 52 HOH HOH . F 5 HOH A 190 990 134 HOH HOH . F 5 HOH A 191 991 146 HOH HOH . F 5 HOH A 192 992 140 HOH HOH . F 5 HOH A 193 993 244 HOH HOH . F 5 HOH A 194 994 20 HOH HOH . F 5 HOH A 195 995 92 HOH HOH . F 5 HOH A 196 996 70 HOH HOH . F 5 HOH A 197 997 190 HOH HOH . F 5 HOH A 198 998 214 HOH HOH . F 5 HOH A 199 999 86 HOH HOH . F 5 HOH A 200 1000 34 HOH HOH . F 5 HOH A 201 1001 186 HOH HOH . F 5 HOH A 202 1002 117 HOH HOH . F 5 HOH A 203 1003 245 HOH HOH . F 5 HOH A 204 1004 166 HOH HOH . F 5 HOH A 205 1005 119 HOH HOH . F 5 HOH A 206 1006 57 HOH HOH . F 5 HOH A 207 1007 179 HOH HOH . F 5 HOH A 208 1008 46 HOH HOH . F 5 HOH A 209 1009 231 HOH HOH . F 5 HOH A 210 1010 159 HOH HOH . F 5 HOH A 211 1011 143 HOH HOH . F 5 HOH A 212 1012 185 HOH HOH . F 5 HOH A 213 1013 230 HOH HOH . F 5 HOH A 214 1014 234 HOH HOH . F 5 HOH A 215 1015 204 HOH HOH . F 5 HOH A 216 1016 127 HOH HOH . F 5 HOH A 217 1017 171 HOH HOH . F 5 HOH A 218 1018 174 HOH HOH . F 5 HOH A 219 1019 175 HOH HOH . F 5 HOH A 220 1020 202 HOH HOH . F 5 HOH A 221 1021 211 HOH HOH . F 5 HOH A 222 1022 215 HOH HOH . F 5 HOH A 223 1023 239 HOH HOH . F 5 HOH A 224 1024 94 HOH HOH . F 5 HOH A 225 1025 96 HOH HOH . F 5 HOH A 226 1026 152 HOH HOH . F 5 HOH A 227 1027 67 HOH HOH . F 5 HOH A 228 1028 47 HOH HOH . F 5 HOH A 229 1029 208 HOH HOH . F 5 HOH A 230 1030 91 HOH HOH . F 5 HOH A 231 1031 170 HOH HOH . F 5 HOH A 232 1032 177 HOH HOH . F 5 HOH A 233 1033 242 HOH HOH . F 5 HOH A 234 1034 209 HOH HOH . F 5 HOH A 235 1035 248 HOH HOH . F 5 HOH A 236 1036 210 HOH HOH . F 5 HOH A 237 1037 169 HOH HOH . F 5 HOH A 238 1038 103 HOH HOH . F 5 HOH A 239 1039 150 HOH HOH . F 5 HOH A 240 1040 243 HOH HOH . F 5 HOH A 241 1041 227 HOH HOH . F 5 HOH A 242 1042 155 HOH HOH . F 5 HOH A 243 1043 221 HOH HOH . F 5 HOH A 244 1044 120 HOH HOH . F 5 HOH A 245 1045 187 HOH HOH . F 5 HOH A 246 1046 205 HOH HOH . F 5 HOH A 247 1047 229 HOH HOH . F 5 HOH A 248 1048 164 HOH HOH . F 5 HOH A 249 1049 162 HOH HOH . F 5 HOH A 250 1050 217 HOH HOH . F 5 HOH A 251 1051 182 HOH HOH . F 5 HOH A 252 1052 149 HOH HOH . F 5 HOH A 253 1053 188 HOH HOH . F 5 HOH A 254 1054 216 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 116.087 _atom_site.Cartn_y 10.383 _atom_site.Cartn_z 56.241 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #