data_5K8K # _model_server_result.job_id 75V2tdSjDfr4BVdArV9TXw _model_server_result.datetime_utc '2024-10-23 12:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5K8K # _exptl.entry_id 5K8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K8K _cell.length_a 99.84 _cell.length_b 99.84 _cell.length_c 200.85 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PHE 26 A PHE 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 27 A MSE 27 1_555 A N GLN 28 A GLN 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C ILE 172 A ILE 172 1_555 A N MSE 173 A MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 173 A MSE 173 1_555 A N ASP 174 A ASP 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C LYS 225 A LYS 225 1_555 A N MSE 226 A MSE 226 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C LYS 225 A LYS 225 1_555 A N MSE 226 A MSE 226 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 226 A MSE 226 1_555 A N ASP 227 A ASP 227 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 226 A MSE 226 1_555 A N ASP 227 A ASP 227 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 9 A ASP 9 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A NE2 HIS 11 A HIS 11 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A OD2 ASP 42 A ASP 42 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc4 A OD2 ASP 42 A ASP 42 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 A OD1 ASN 80 A ASN 80 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 A NE2 HIS 115 A HIS 115 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 A ND1 HIS 196 A HIS 196 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K8K _atom_sites.fract_transf_matrix[1][1] 0.010016 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 LP5 A 1 303 303 LP5 LP5 . E 4 ACT A 1 304 304 ACT ACT . F 4 ACT A 1 305 305 ACT ACT . G 5 GOL A 1 306 306 GOL GOL . H 5 GOL A 1 307 307 GOL GOL . I 6 HOH A 1 401 401 HOH HOH . I 6 HOH A 2 402 402 HOH HOH . I 6 HOH A 3 403 403 HOH HOH . I 6 HOH A 4 404 404 HOH HOH . I 6 HOH A 5 405 405 HOH HOH . I 6 HOH A 6 406 406 HOH HOH . I 6 HOH A 7 407 407 HOH HOH . I 6 HOH A 8 408 408 HOH HOH . I 6 HOH A 9 409 409 HOH HOH . I 6 HOH A 10 410 410 HOH HOH . I 6 HOH A 11 411 411 HOH HOH . I 6 HOH A 12 412 412 HOH HOH . I 6 HOH A 13 413 413 HOH HOH . I 6 HOH A 14 414 414 HOH HOH . I 6 HOH A 15 415 415 HOH HOH . I 6 HOH A 16 416 416 HOH HOH . I 6 HOH A 17 417 417 HOH HOH . I 6 HOH A 18 418 418 HOH HOH . I 6 HOH A 19 419 419 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.426 _atom_site.Cartn_y 27.609 _atom_site.Cartn_z 10.805 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 56.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #