data_5K8O # _model_server_result.job_id 7V0WS4CaurXUU5CZQVSDhw _model_server_result.datetime_utc '2024-11-25 04:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 5K8O # _exptl.entry_id 5K8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K8O _cell.length_a 186.773 _cell.length_b 249.338 _cell.length_c 249.184 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A OD1 ASN 124 A ASN 124 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OE1 GLU 196 A GLU 196 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 A OE2 GLU 196 A GLU 196 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 I MN MN . A MN 501 1_555 J OAJ 6R7 . A 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc6 B NE2 HIS 86 B HIS 86 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 B OD1 ASN 124 B ASN 124 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 B OE1 GLU 196 B GLU 196 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 B OE2 GLU 196 B GLU 196 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 K MN MN . B MN 501 1_555 L OAJ 6R7 . B 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc11 C NE2 HIS 86 C HIS 86 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 C OD1 ASN 124 C ASN 124 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc13 C OE1 GLU 196 C GLU 196 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc14 C OE2 GLU 196 C GLU 196 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 M MN MN . C MN 501 1_555 N OAA 6R7 . C 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc16 M MN MN . C MN 501 1_555 N OAJ 6R7 . C 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc17 D NE2 HIS 86 D HIS 86 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc18 D OD1 ASN 124 D ASN 124 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc19 D OE1 GLU 196 D GLU 196 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc20 D OE2 GLU 196 D GLU 196 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc21 O MN MN . D MN 501 1_555 P OAJ 6R7 . D 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc22 O MN MN . D MN 501 1_555 P OAA 6R7 . D 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc23 E NE2 HIS 86 E HIS 86 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc24 E OD1 ASN 124 E ASN 124 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc25 E OE1 GLU 196 E GLU 196 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 E OE2 GLU 196 E GLU 196 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc27 Q MN MN . E MN 501 1_555 R OAJ 6R7 . E 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? metalc ? metalc28 F NE2 HIS 86 F HIS 86 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 F OD1 ASN 124 F ASN 124 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc30 F OE1 GLU 196 F GLU 196 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc31 F OE2 GLU 196 F GLU 196 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc32 S MN MN . F MN 501 1_555 T OAC 6R7 . F 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc33 S MN MN . F MN 501 1_555 T OAJ 6R7 . F 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc34 G NE2 HIS 86 G HIS 86 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc35 G OD1 ASN 124 G ASN 124 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc36 G OE1 GLU 196 G GLU 196 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc37 G OE2 GLU 196 G GLU 196 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc38 U MN MN . G MN 501 1_555 V OAC 6R7 . G 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc39 U MN MN . G MN 501 1_555 V OAJ 6R7 . G 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc40 H NE2 HIS 86 H HIS 86 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc41 H OD1 ASN 124 H ASN 124 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc42 H OE1 GLU 196 H GLU 196 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc43 H OE2 GLU 196 H GLU 196 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc44 W MN MN . H MN 501 1_555 X OAJ 6R7 . H 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K8O _atom_sites.fract_transf_matrix[1][1] 0.005354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MN A 1 501 426 MN MN . J 3 6R7 A 1 502 429 6R7 DRG . K 2 MN B 1 501 426 MN MN . L 3 6R7 B 1 502 429 6R7 DRG . M 2 MN C 1 501 426 MN MN . N 3 6R7 C 1 502 429 6R7 DRG . O 2 MN D 1 501 426 MN MN . P 3 6R7 D 1 502 429 6R7 DRG . Q 2 MN E 1 501 426 MN MN . R 3 6R7 E 1 502 429 6R7 DRG . S 2 MN F 1 501 426 MN MN . T 3 6R7 F 1 502 429 6R7 DRG . U 2 MN G 1 501 426 MN MN . V 3 6R7 G 1 502 429 6R7 DRG . W 2 MN H 1 501 426 MN MN . X 3 6R7 H 1 502 429 6R7 DRG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.923 _atom_site.Cartn_y 75.301 _atom_site.Cartn_z -99.026 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.77 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #