data_5K8O # _model_server_result.job_id tEB0A5lp3eDV4KB0aucRBA _model_server_result.datetime_utc '2024-11-22 04:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":502}' # _entry.id 5K8O # _exptl.entry_id 5K8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.118 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-nitrosalicylic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K8O _cell.length_a 186.773 _cell.length_b 249.338 _cell.length_c 249.184 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A OD1 ASN 124 A ASN 124 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OE1 GLU 196 A GLU 196 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 A OE2 GLU 196 A GLU 196 1_555 I MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 I MN MN . A MN 501 1_555 J OAJ 6R7 . A 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc6 B NE2 HIS 86 B HIS 86 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 B OD1 ASN 124 B ASN 124 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 B OE1 GLU 196 B GLU 196 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 B OE2 GLU 196 B GLU 196 1_555 K MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 K MN MN . B MN 501 1_555 L OAJ 6R7 . B 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc11 C NE2 HIS 86 C HIS 86 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 C OD1 ASN 124 C ASN 124 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc13 C OE1 GLU 196 C GLU 196 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc14 C OE2 GLU 196 C GLU 196 1_555 M MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 M MN MN . C MN 501 1_555 N OAA 6R7 . C 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc16 M MN MN . C MN 501 1_555 N OAJ 6R7 . C 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc17 D NE2 HIS 86 D HIS 86 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc18 D OD1 ASN 124 D ASN 124 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc19 D OE1 GLU 196 D GLU 196 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc20 D OE2 GLU 196 D GLU 196 1_555 O MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc21 O MN MN . D MN 501 1_555 P OAJ 6R7 . D 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc22 O MN MN . D MN 501 1_555 P OAA 6R7 . D 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc23 E NE2 HIS 86 E HIS 86 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc24 E OD1 ASN 124 E ASN 124 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc25 E OE1 GLU 196 E GLU 196 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 E OE2 GLU 196 E GLU 196 1_555 Q MN MN . E MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc27 Q MN MN . E MN 501 1_555 R OAJ 6R7 . E 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? metalc ? metalc28 F NE2 HIS 86 F HIS 86 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc29 F OD1 ASN 124 F ASN 124 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc30 F OE1 GLU 196 F GLU 196 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc31 F OE2 GLU 196 F GLU 196 1_555 S MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc32 S MN MN . F MN 501 1_555 T OAC 6R7 . F 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc33 S MN MN . F MN 501 1_555 T OAJ 6R7 . F 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc34 G NE2 HIS 86 G HIS 86 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc35 G OD1 ASN 124 G ASN 124 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc36 G OE1 GLU 196 G GLU 196 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc37 G OE2 GLU 196 G GLU 196 1_555 U MN MN . G MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc38 U MN MN . G MN 501 1_555 V OAC 6R7 . G 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc39 U MN MN . G MN 501 1_555 V OAJ 6R7 . G 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc40 H NE2 HIS 86 H HIS 86 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc41 H OD1 ASN 124 H ASN 124 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc42 H OE1 GLU 196 H GLU 196 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc43 H OE2 GLU 196 H GLU 196 1_555 W MN MN . H MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc44 W MN MN . H MN 501 1_555 X OAJ 6R7 . H 6R7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? # _chem_comp.formula 'C7 H5 N O5' _chem_comp.formula_weight 183.118 _chem_comp.id 6R7 _chem_comp.mon_nstd_flag . _chem_comp.name '5-nitrosalicylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-nitro-2-oxidanyl-benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAB 6R7 doub 1 n n OAC CAB 6R7 sing 2 n n CAB CAD 6R7 sing 3 n n OAJ CAI 6R7 sing 4 n n CAD CAI 6R7 doub 5 n y CAD CAE 6R7 sing 6 n y CAI CAH 6R7 sing 7 n y CAE CAF 6R7 doub 8 n y CAH CAG 6R7 doub 9 n y CAF CAG 6R7 sing 10 n y CAF NAK 6R7 sing 11 n n OAL NAK 6R7 sing 12 n n NAK OAM 6R7 doub 13 n n OAC H1 6R7 sing 14 n n CAE H2 6R7 sing 15 n n CAG H3 6R7 sing 16 n n CAH H4 6R7 sing 17 n n OAJ H5 6R7 sing 18 n n # _atom_sites.entry_id 5K8O _atom_sites.fract_transf_matrix[1][1] 0.005354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MN A 1 501 426 MN MN . J 3 6R7 A 1 502 429 6R7 DRG . K 2 MN B 1 501 426 MN MN . L 3 6R7 B 1 502 429 6R7 DRG . M 2 MN C 1 501 426 MN MN . N 3 6R7 C 1 502 429 6R7 DRG . O 2 MN D 1 501 426 MN MN . P 3 6R7 D 1 502 429 6R7 DRG . Q 2 MN E 1 501 426 MN MN . R 3 6R7 E 1 502 429 6R7 DRG . S 2 MN F 1 501 426 MN MN . T 3 6R7 F 1 502 429 6R7 DRG . U 2 MN G 1 501 426 MN MN . V 3 6R7 G 1 502 429 6R7 DRG . W 2 MN H 1 501 426 MN MN . X 3 6R7 H 1 502 429 6R7 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 6R7 . . . V 3 34.195 22.008 -78.515 1 47.85 ? OAA 6R7 502 G 1 HETATM 2 C CAB 6R7 . . . V 3 35.13 22.352 -77.755 0.96 43.89 ? CAB 6R7 502 G 1 HETATM 3 O OAC 6R7 . . . V 3 35.268 21.82 -76.63 1 44.11 ? OAC 6R7 502 G 1 HETATM 4 C CAD 6R7 . . . V 3 36.054 23.283 -78.196 1 43.55 ? CAD 6R7 502 G 1 HETATM 5 C CAE 6R7 . . . V 3 35.911 23.855 -79.446 1 43.33 ? CAE 6R7 502 G 1 HETATM 6 C CAF 6R7 . . . V 3 36.849 24.764 -79.898 0.98 41.68 ? CAF 6R7 502 G 1 HETATM 7 N NAK 6R7 . . . V 3 36.667 25.299 -81.092 1 40.83 ? NAK 6R7 502 G 1 HETATM 8 O OAM 6R7 . . . V 3 37.578 26.065 -81.592 0.74 40.07 ? OAM 6R7 502 G 1 HETATM 9 O OAL 6R7 . . . V 3 35.626 24.951 -81.77 0.53 43.69 ? OAL 6R7 502 G 1 HETATM 10 C CAG 6R7 . . . V 3 37.925 25.123 -79.087 0 50.12 ? CAG 6R7 502 G 1 HETATM 11 C CAH 6R7 . . . V 3 38.07 24.544 -77.825 1 43.39 ? CAH 6R7 502 G 1 HETATM 12 C CAI 6R7 . . . V 3 37.127 23.63 -77.399 1 43.84 ? CAI 6R7 502 G 1 HETATM 13 O OAJ 6R7 . . . V 3 37.194 23.026 -76.195 0.66 46.72 ? OAJ 6R7 502 G 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #