data_5K8Q # _model_server_result.job_id sElrLtL71_q2ngUEdJejVg _model_server_result.datetime_utc '2024-11-22 00:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5K8Q # _exptl.entry_id 5K8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.35 _cell.angle_gamma 90 _cell.entry_id 5K8Q _cell.length_a 156.51 _cell.length_b 37.23 _cell.length_c 35.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 28 B ARG 626 1_555 B N NH2 29 B NH2 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD2 ASP 21 A ASP 20 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD1 ASP 25 A ASP 24 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A O THR 27 A THR 26 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc7 A OD2 ASP 57 A ASP 56 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A OD1 ASP 59 A ASP 58 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc9 A OD1 ASN 61 A ASN 60 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 A O THR 63 A THR 62 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 A OE1 GLU 68 A GLU 67 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc12 A OE2 GLU 68 A GLU 67 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc13 A OD2 ASP 94 A ASP 93 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc14 A OD1 ASP 96 A ASP 95 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc15 A OD1 ASN 98 A ASN 97 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc16 A O TYR 100 A TYR 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc17 A OE1 GLU 105 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc18 A OE2 GLU 105 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc19 A OD1 ASP 130 A ASP 129 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc20 A OD2 ASP 132 A ASP 131 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc21 A OD2 ASP 134 A ASP 133 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc22 A O GLN 136 A GLN 135 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc23 A OE1 GLU 141 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc24 A OE2 GLU 141 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc25 C CA CA . A CA 201 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc26 D CA CA . A CA 202 1_555 H O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc27 E CA CA . A CA 203 1_555 H O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc28 E CA CA . A CA 203 1_555 H O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc29 F CA CA . A CA 204 1_555 H O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K8Q _atom_sites.fract_transf_matrix[1][1] 0.006389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000486 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 149 CA CA . D 3 CA A 1 202 150 CA CA . E 3 CA A 1 203 151 CA CA . F 3 CA A 1 204 152 CA CA . G 4 IMD A 1 205 153 IMD IMD . H 5 HOH A 1 301 117 HOH HOH . H 5 HOH A 2 302 31 HOH HOH . H 5 HOH A 3 303 107 HOH HOH . H 5 HOH A 4 304 43 HOH HOH . H 5 HOH A 5 305 63 HOH HOH . H 5 HOH A 6 306 57 HOH HOH . H 5 HOH A 7 307 17 HOH HOH . H 5 HOH A 8 308 73 HOH HOH . H 5 HOH A 9 309 78 HOH HOH . H 5 HOH A 10 310 42 HOH HOH . H 5 HOH A 11 311 66 HOH HOH . H 5 HOH A 12 312 50 HOH HOH . H 5 HOH A 13 313 16 HOH HOH . H 5 HOH A 14 314 64 HOH HOH . H 5 HOH A 15 315 121 HOH HOH . H 5 HOH A 16 316 103 HOH HOH . H 5 HOH A 17 317 81 HOH HOH . H 5 HOH A 18 318 59 HOH HOH . H 5 HOH A 19 319 39 HOH HOH . H 5 HOH A 20 320 60 HOH HOH . H 5 HOH A 21 321 113 HOH HOH . H 5 HOH A 22 322 18 HOH HOH . H 5 HOH A 23 323 8 HOH HOH . H 5 HOH A 24 324 95 HOH HOH . H 5 HOH A 25 325 47 HOH HOH . H 5 HOH A 26 326 89 HOH HOH . H 5 HOH A 27 327 22 HOH HOH . H 5 HOH A 28 328 7 HOH HOH . H 5 HOH A 29 329 125 HOH HOH . H 5 HOH A 30 330 5 HOH HOH . H 5 HOH A 31 331 4 HOH HOH . H 5 HOH A 32 332 26 HOH HOH . H 5 HOH A 33 333 30 HOH HOH . H 5 HOH A 34 334 90 HOH HOH . H 5 HOH A 35 335 110 HOH HOH . H 5 HOH A 36 336 23 HOH HOH . H 5 HOH A 37 337 6 HOH HOH . H 5 HOH A 38 338 62 HOH HOH . H 5 HOH A 39 339 70 HOH HOH . H 5 HOH A 40 340 25 HOH HOH . H 5 HOH A 41 341 38 HOH HOH . H 5 HOH A 42 342 56 HOH HOH . H 5 HOH A 43 343 58 HOH HOH . H 5 HOH A 44 344 9 HOH HOH . H 5 HOH A 45 345 85 HOH HOH . H 5 HOH A 46 346 32 HOH HOH . H 5 HOH A 47 347 45 HOH HOH . H 5 HOH A 48 348 11 HOH HOH . H 5 HOH A 49 349 34 HOH HOH . H 5 HOH A 50 350 1 HOH HOH . H 5 HOH A 51 351 127 HOH HOH . H 5 HOH A 52 352 108 HOH HOH . H 5 HOH A 53 353 122 HOH HOH . H 5 HOH A 54 354 27 HOH HOH . H 5 HOH A 55 355 52 HOH HOH . H 5 HOH A 56 356 83 HOH HOH . H 5 HOH A 57 357 12 HOH HOH . H 5 HOH A 58 358 77 HOH HOH . H 5 HOH A 59 359 98 HOH HOH . H 5 HOH A 60 360 101 HOH HOH . H 5 HOH A 61 361 15 HOH HOH . H 5 HOH A 62 362 14 HOH HOH . H 5 HOH A 63 363 115 HOH HOH . H 5 HOH A 64 364 65 HOH HOH . H 5 HOH A 65 365 20 HOH HOH . H 5 HOH A 66 366 126 HOH HOH . H 5 HOH A 67 367 13 HOH HOH . H 5 HOH A 68 368 2 HOH HOH . H 5 HOH A 69 369 74 HOH HOH . H 5 HOH A 70 370 3 HOH HOH . H 5 HOH A 71 371 69 HOH HOH . H 5 HOH A 72 372 124 HOH HOH . H 5 HOH A 73 373 28 HOH HOH . H 5 HOH A 74 374 91 HOH HOH . H 5 HOH A 75 375 112 HOH HOH . H 5 HOH A 76 376 84 HOH HOH . H 5 HOH A 77 377 24 HOH HOH . H 5 HOH A 78 378 21 HOH HOH . H 5 HOH A 79 379 19 HOH HOH . H 5 HOH A 80 380 82 HOH HOH . H 5 HOH A 81 381 46 HOH HOH . H 5 HOH A 82 382 87 HOH HOH . H 5 HOH A 83 383 75 HOH HOH . H 5 HOH A 84 384 55 HOH HOH . H 5 HOH A 85 385 120 HOH HOH . H 5 HOH A 86 386 71 HOH HOH . H 5 HOH A 87 387 37 HOH HOH . H 5 HOH A 88 388 29 HOH HOH . H 5 HOH A 89 389 130 HOH HOH . H 5 HOH A 90 390 97 HOH HOH . H 5 HOH A 91 391 33 HOH HOH . H 5 HOH A 92 392 88 HOH HOH . H 5 HOH A 93 393 102 HOH HOH . H 5 HOH A 94 394 67 HOH HOH . H 5 HOH A 95 395 99 HOH HOH . H 5 HOH A 96 396 54 HOH HOH . H 5 HOH A 97 397 114 HOH HOH . H 5 HOH A 98 398 36 HOH HOH . H 5 HOH A 99 399 96 HOH HOH . H 5 HOH A 100 400 116 HOH HOH . H 5 HOH A 101 401 79 HOH HOH . H 5 HOH A 102 402 94 HOH HOH . H 5 HOH A 103 403 86 HOH HOH . H 5 HOH A 104 404 72 HOH HOH . H 5 HOH A 105 405 128 HOH HOH . H 5 HOH A 106 406 40 HOH HOH . H 5 HOH A 107 407 100 HOH HOH . H 5 HOH A 108 408 104 HOH HOH . H 5 HOH A 109 409 68 HOH HOH . H 5 HOH A 110 410 53 HOH HOH . H 5 HOH A 111 411 123 HOH HOH . H 5 HOH A 112 412 93 HOH HOH . H 5 HOH A 113 413 44 HOH HOH . H 5 HOH A 114 414 35 HOH HOH . H 5 HOH A 115 415 109 HOH HOH . H 5 HOH A 116 416 106 HOH HOH . H 5 HOH A 117 417 92 HOH HOH . H 5 HOH A 118 418 118 HOH HOH . H 5 HOH A 119 419 80 HOH HOH . H 5 HOH A 120 420 111 HOH HOH . H 5 HOH A 121 421 119 HOH HOH . I 5 HOH B 1 701 129 HOH HOH . I 5 HOH B 2 702 105 HOH HOH . I 5 HOH B 3 703 61 HOH HOH . I 5 HOH B 4 704 10 HOH HOH . I 5 HOH B 5 705 51 HOH HOH . I 5 HOH B 6 706 48 HOH HOH . I 5 HOH B 7 707 41 HOH HOH . I 5 HOH B 8 708 49 HOH HOH . I 5 HOH B 9 709 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.729 _atom_site.Cartn_y -10.658 _atom_site.Cartn_z 35.642 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #