data_5K8Q
#
_model_server_result.job_id            mT-7l2a-YFjci2k3sV8wxg 
_model_server_result.datetime_utc      '2024-10-12 16:36:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    5K8Q 
#
_exptl.entry_id    5K8Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.35 
_cell.angle_gamma         90 
_cell.entry_id            5K8Q 
_cell.length_a            156.51 
_cell.length_b            37.23 
_cell.length_c            35.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 28 B ARG 626 1_555 B N NH2 29 B NH2 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD2 ASP 21 A ASP 20 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 A OD1 ASP 25 A ASP 24 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc4 A O THR 27 A THR 26 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc7 A OD2 ASP 57 A ASP 56 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc8 A OD1 ASP 59 A ASP 58 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc9 A OD1 ASN 61 A ASN 60 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc10 A O THR 63 A THR 62 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc11 A OE1 GLU 68 A GLU 67 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc12 A OE2 GLU 68 A GLU 67 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc13 A OD2 ASP 94 A ASP 93 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc14 A OD1 ASP 96 A ASP 95 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc15 A OD1 ASN 98 A ASN 97 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc16 A O TYR 100 A TYR 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc17 A OE1 GLU 105 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc18 A OE2 GLU 105 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc19 A OD1 ASP 130 A ASP 129 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc20 A OD2 ASP 132 A ASP 131 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc21 A OD2 ASP 134 A ASP 133 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc22 A O GLN 136 A GLN 135 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc23 A OE1 GLU 141 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc24 A OE2 GLU 141 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc25 C CA CA . A CA 201 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc26 D CA CA . A CA 202 1_555 H O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc27 E CA CA . A CA 203 1_555 H O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc28 E CA CA . A CA 203 1_555 H O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc29 F CA CA . A CA 204 1_555 H O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 166 n y 
N1 C5 IMD sing 167 n y 
N1 HN1 IMD sing 168 n n 
C2 N3 IMD doub 169 n y 
C2 H2 IMD sing 170 n n 
N3 C4 IMD sing 171 n y 
N3 HN3 IMD sing 172 n n 
C4 C5 IMD doub 173 n y 
C4 H4 IMD sing 174 n n 
C5 H5 IMD sing 175 n n 
#
_atom_sites.entry_id                     5K8Q 
_atom_sites.fract_transf_matrix[1][1]    0.006389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000486 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028069 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 201 149 CA CA . 
D 3 CA A 1 202 150 CA CA . 
E 3 CA A 1 203 151 CA CA . 
F 3 CA A 1 204 152 CA CA . 
G 4 IMD A 1 205 153 IMD IMD . 
H 5 HOH A 1 301 117 HOH HOH . 
H 5 HOH A 2 302 31 HOH HOH . 
H 5 HOH A 3 303 107 HOH HOH . 
H 5 HOH A 4 304 43 HOH HOH . 
H 5 HOH A 5 305 63 HOH HOH . 
H 5 HOH A 6 306 57 HOH HOH . 
H 5 HOH A 7 307 17 HOH HOH . 
H 5 HOH A 8 308 73 HOH HOH . 
H 5 HOH A 9 309 78 HOH HOH . 
H 5 HOH A 10 310 42 HOH HOH . 
H 5 HOH A 11 311 66 HOH HOH . 
H 5 HOH A 12 312 50 HOH HOH . 
H 5 HOH A 13 313 16 HOH HOH . 
H 5 HOH A 14 314 64 HOH HOH . 
H 5 HOH A 15 315 121 HOH HOH . 
H 5 HOH A 16 316 103 HOH HOH . 
H 5 HOH A 17 317 81 HOH HOH . 
H 5 HOH A 18 318 59 HOH HOH . 
H 5 HOH A 19 319 39 HOH HOH . 
H 5 HOH A 20 320 60 HOH HOH . 
H 5 HOH A 21 321 113 HOH HOH . 
H 5 HOH A 22 322 18 HOH HOH . 
H 5 HOH A 23 323 8 HOH HOH . 
H 5 HOH A 24 324 95 HOH HOH . 
H 5 HOH A 25 325 47 HOH HOH . 
H 5 HOH A 26 326 89 HOH HOH . 
H 5 HOH A 27 327 22 HOH HOH . 
H 5 HOH A 28 328 7 HOH HOH . 
H 5 HOH A 29 329 125 HOH HOH . 
H 5 HOH A 30 330 5 HOH HOH . 
H 5 HOH A 31 331 4 HOH HOH . 
H 5 HOH A 32 332 26 HOH HOH . 
H 5 HOH A 33 333 30 HOH HOH . 
H 5 HOH A 34 334 90 HOH HOH . 
H 5 HOH A 35 335 110 HOH HOH . 
H 5 HOH A 36 336 23 HOH HOH . 
H 5 HOH A 37 337 6 HOH HOH . 
H 5 HOH A 38 338 62 HOH HOH . 
H 5 HOH A 39 339 70 HOH HOH . 
H 5 HOH A 40 340 25 HOH HOH . 
H 5 HOH A 41 341 38 HOH HOH . 
H 5 HOH A 42 342 56 HOH HOH . 
H 5 HOH A 43 343 58 HOH HOH . 
H 5 HOH A 44 344 9 HOH HOH . 
H 5 HOH A 45 345 85 HOH HOH . 
H 5 HOH A 46 346 32 HOH HOH . 
H 5 HOH A 47 347 45 HOH HOH . 
H 5 HOH A 48 348 11 HOH HOH . 
H 5 HOH A 49 349 34 HOH HOH . 
H 5 HOH A 50 350 1 HOH HOH . 
H 5 HOH A 51 351 127 HOH HOH . 
H 5 HOH A 52 352 108 HOH HOH . 
H 5 HOH A 53 353 122 HOH HOH . 
H 5 HOH A 54 354 27 HOH HOH . 
H 5 HOH A 55 355 52 HOH HOH . 
H 5 HOH A 56 356 83 HOH HOH . 
H 5 HOH A 57 357 12 HOH HOH . 
H 5 HOH A 58 358 77 HOH HOH . 
H 5 HOH A 59 359 98 HOH HOH . 
H 5 HOH A 60 360 101 HOH HOH . 
H 5 HOH A 61 361 15 HOH HOH . 
H 5 HOH A 62 362 14 HOH HOH . 
H 5 HOH A 63 363 115 HOH HOH . 
H 5 HOH A 64 364 65 HOH HOH . 
H 5 HOH A 65 365 20 HOH HOH . 
H 5 HOH A 66 366 126 HOH HOH . 
H 5 HOH A 67 367 13 HOH HOH . 
H 5 HOH A 68 368 2 HOH HOH . 
H 5 HOH A 69 369 74 HOH HOH . 
H 5 HOH A 70 370 3 HOH HOH . 
H 5 HOH A 71 371 69 HOH HOH . 
H 5 HOH A 72 372 124 HOH HOH . 
H 5 HOH A 73 373 28 HOH HOH . 
H 5 HOH A 74 374 91 HOH HOH . 
H 5 HOH A 75 375 112 HOH HOH . 
H 5 HOH A 76 376 84 HOH HOH . 
H 5 HOH A 77 377 24 HOH HOH . 
H 5 HOH A 78 378 21 HOH HOH . 
H 5 HOH A 79 379 19 HOH HOH . 
H 5 HOH A 80 380 82 HOH HOH . 
H 5 HOH A 81 381 46 HOH HOH . 
H 5 HOH A 82 382 87 HOH HOH . 
H 5 HOH A 83 383 75 HOH HOH . 
H 5 HOH A 84 384 55 HOH HOH . 
H 5 HOH A 85 385 120 HOH HOH . 
H 5 HOH A 86 386 71 HOH HOH . 
H 5 HOH A 87 387 37 HOH HOH . 
H 5 HOH A 88 388 29 HOH HOH . 
H 5 HOH A 89 389 130 HOH HOH . 
H 5 HOH A 90 390 97 HOH HOH . 
H 5 HOH A 91 391 33 HOH HOH . 
H 5 HOH A 92 392 88 HOH HOH . 
H 5 HOH A 93 393 102 HOH HOH . 
H 5 HOH A 94 394 67 HOH HOH . 
H 5 HOH A 95 395 99 HOH HOH . 
H 5 HOH A 96 396 54 HOH HOH . 
H 5 HOH A 97 397 114 HOH HOH . 
H 5 HOH A 98 398 36 HOH HOH . 
H 5 HOH A 99 399 96 HOH HOH . 
H 5 HOH A 100 400 116 HOH HOH . 
H 5 HOH A 101 401 79 HOH HOH . 
H 5 HOH A 102 402 94 HOH HOH . 
H 5 HOH A 103 403 86 HOH HOH . 
H 5 HOH A 104 404 72 HOH HOH . 
H 5 HOH A 105 405 128 HOH HOH . 
H 5 HOH A 106 406 40 HOH HOH . 
H 5 HOH A 107 407 100 HOH HOH . 
H 5 HOH A 108 408 104 HOH HOH . 
H 5 HOH A 109 409 68 HOH HOH . 
H 5 HOH A 110 410 53 HOH HOH . 
H 5 HOH A 111 411 123 HOH HOH . 
H 5 HOH A 112 412 93 HOH HOH . 
H 5 HOH A 113 413 44 HOH HOH . 
H 5 HOH A 114 414 35 HOH HOH . 
H 5 HOH A 115 415 109 HOH HOH . 
H 5 HOH A 116 416 106 HOH HOH . 
H 5 HOH A 117 417 92 HOH HOH . 
H 5 HOH A 118 418 118 HOH HOH . 
H 5 HOH A 119 419 80 HOH HOH . 
H 5 HOH A 120 420 111 HOH HOH . 
H 5 HOH A 121 421 119 HOH HOH . 
I 5 HOH B 1 701 129 HOH HOH . 
I 5 HOH B 2 702 105 HOH HOH . 
I 5 HOH B 3 703 61 HOH HOH . 
I 5 HOH B 4 704 10 HOH HOH . 
I 5 HOH B 5 705 51 HOH HOH . 
I 5 HOH B 6 706 48 HOH HOH . 
I 5 HOH B 7 707 41 HOH HOH . 
I 5 HOH B 8 708 49 HOH HOH . 
I 5 HOH B 9 709 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . G 4 18.99 11.793 38.556 1 34.47 ? N1 IMD 205 A 1 
HETATM 2 C C2 IMD . . . G 4 19.877 12.367 37.707 1 38.15 ? C2 IMD 205 A 1 
HETATM 3 N N3 IMD . . . G 4 21.121 11.899 37.992 1 37.64 ? N3 IMD 205 A 1 
HETATM 4 C C4 IMD . . . G 4 21.016 11.031 39.024 1 43.31 ? C4 IMD 205 A 1 
HETATM 5 C C5 IMD . . . G 4 19.67 10.963 39.382 1 35.67 ? C5 IMD 205 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#