data_5K92 # _model_server_result.job_id gBi5waClt-GCCEcMBE1dVw _model_server_result.datetime_utc '2024-10-28 02:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 5K92 # _exptl.entry_id 5K92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.78 _cell.angle_gamma 90 _cell.entry_id 5K92 _cell.length_a 77.574 _cell.length_b 29.409 _cell.length_c 44.353 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C GLY 30 A GLY 29 1_555 A N NH2 31 A NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C ACE 1 B ACE 0 1_555 B N GLU 2 B GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C GLY 30 B GLY 29 1_555 B N NH2 31 B NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 C C ACE 1 C ACE 0 1_555 C N GLU 2 C GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 C OE1 GLU 28 C GLU 27 1_555 O CL CL . C CL 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc1 A OE1 GLU 7 A GLU 6 1_555 K ZN ZN . C ZN 101 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc2 A OE2 GLU 7 A GLU 6 1_555 K ZN ZN . C ZN 101 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A OE1 GLU 25 A GLU 24 1_555 D ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc4 A OE2 GLU 25 A GLU 24 1_555 D ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 A NE2 HIS 29 A HIS 28 1_555 E ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc6 D ZN ZN . A ZN 101 4_555 B OE2 GLU 25 B GLU 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc7 D ZN ZN . A ZN 101 4_555 B NE2 HIS 29 B HIS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc8 D ZN ZN . A ZN 101 1_555 Q O HOH . B HOH 201 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc9 E ZN ZN . A ZN 102 1_556 B OE1 GLU 4 B GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc10 E ZN ZN . A ZN 102 1_556 B OE2 GLU 4 B GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc11 E ZN ZN . A ZN 102 4_555 B OE1 GLU 21 B GLU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc12 E ZN ZN . A ZN 102 4_555 B OE1 GLU 25 B GLU 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc13 P O HOH . A HOH 209 3_545 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc14 C OE2 GLU 2 C GLU 1 1_555 K ZN ZN . C ZN 101 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc15 C NE2 HIS 29 C HIS 28 1_555 K ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K92 _atom_sites.fract_transf_matrix[1][1] 0.012891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 101 101 ZN ZN . E 2 ZN A 1 102 102 ZN ZN . F 3 PEG A 1 103 103 PEG PEG . G 3 PEG A 1 104 104 PEG PEG . H 3 PEG A 1 105 105 PEG PEG . I 3 PEG B 1 101 101 PEG PEG . J 4 CL B 1 102 102 CL CL . K 2 ZN C 1 101 102 ZN ZN . L 5 PGE C 1 102 103 PGE PGE . M 3 PEG C 1 103 104 PEG PEG . N 3 PEG C 1 104 105 PEG PEG . O 4 CL C 1 105 106 CL CL . P 6 HOH A 1 201 201 HOH HOH . P 6 HOH A 2 202 202 HOH HOH . P 6 HOH A 3 203 203 HOH HOH . P 6 HOH A 4 204 204 HOH HOH . P 6 HOH A 5 205 205 HOH HOH . P 6 HOH A 6 206 206 HOH HOH . P 6 HOH A 7 207 207 HOH HOH . P 6 HOH A 8 208 208 HOH HOH . P 6 HOH A 9 209 209 HOH HOH . P 6 HOH A 10 210 210 HOH HOH . P 6 HOH A 11 211 211 HOH HOH . P 6 HOH A 12 212 212 HOH HOH . Q 6 HOH B 1 201 201 HOH HOH . Q 6 HOH B 2 202 202 HOH HOH . Q 6 HOH B 3 203 203 HOH HOH . Q 6 HOH B 4 204 204 HOH HOH . Q 6 HOH B 5 205 205 HOH HOH . Q 6 HOH B 6 206 206 HOH HOH . Q 6 HOH B 7 207 207 HOH HOH . Q 6 HOH B 8 208 208 HOH HOH . Q 6 HOH B 9 209 209 HOH HOH . Q 6 HOH B 10 210 210 HOH HOH . Q 6 HOH B 11 211 211 HOH HOH . Q 6 HOH B 12 212 212 HOH HOH . Q 6 HOH B 13 213 213 HOH HOH . Q 6 HOH B 14 214 214 HOH HOH . Q 6 HOH B 15 215 215 HOH HOH . Q 6 HOH B 16 216 216 HOH HOH . Q 6 HOH B 17 217 217 HOH HOH . Q 6 HOH B 18 218 218 HOH HOH . Q 6 HOH B 19 219 219 HOH HOH . Q 6 HOH B 20 220 220 HOH HOH . R 6 HOH C 1 201 201 HOH HOH . R 6 HOH C 2 202 202 HOH HOH . R 6 HOH C 3 203 203 HOH HOH . R 6 HOH C 4 204 204 HOH HOH . R 6 HOH C 5 205 205 HOH HOH . R 6 HOH C 6 206 206 HOH HOH . R 6 HOH C 7 207 207 HOH HOH . R 6 HOH C 8 208 208 HOH HOH . R 6 HOH C 9 209 209 HOH HOH . R 6 HOH C 10 210 210 HOH HOH . R 6 HOH C 11 211 211 HOH HOH . R 6 HOH C 12 212 212 HOH HOH . R 6 HOH C 13 213 213 HOH HOH . R 6 HOH C 14 214 214 HOH HOH . R 6 HOH C 15 215 215 HOH HOH . R 6 HOH C 16 216 216 HOH HOH . R 6 HOH C 17 217 217 HOH HOH . R 6 HOH C 18 218 218 HOH HOH . R 6 HOH C 19 219 219 HOH HOH . R 6 HOH C 20 220 220 HOH HOH . R 6 HOH C 21 221 221 HOH HOH . R 6 HOH C 22 222 222 HOH HOH . R 6 HOH C 23 223 223 HOH HOH . R 6 HOH C 24 224 224 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.018 _atom_site.Cartn_y -4.499 _atom_site.Cartn_z -8.446 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 14.38 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #