data_5K95
#
_model_server_result.job_id            d8geyZrohWylQap6PaB53w 
_model_server_result.datetime_utc      '2024-11-14 18:52:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k95 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5K95 
#
_exptl.entry_id    5K95 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "8-OXO-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5K95 
_cell.length_a            91.876 
_cell.length_b            100.557 
_cell.length_c            115.041 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K95 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 100.557 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 148 A PRO 148 1_555 A N SNC 149 A SNC 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 A C SNC 149 A SNC 149 1_555 A N SER 150 A SER 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 B C PRO 148 B PRO 148 1_555 B N SNC 149 B SNC 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 B C SNC 149 B SNC 149 1_555 B N SER 150 B SER 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
metalc ? metalc1 B SG CYS 147 B CYS 147 1_555 D ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc2 B NE2 HIS 159 B HIS 159 1_555 D ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc3 B OE2 GLU 201 B GLU 201 1_555 D ZN ZN . B ZN 302 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 C O8 8GT . B 8GT 301 1_555 D ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
#
_chem_comp.formula           'C10 H16 N5 O15 P3' 
_chem_comp.formula_weight    539.18 
_chem_comp.id                8GT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "8-OXO-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 8GT doub 1 n n 
PG O2G 8GT sing 2 n n 
PG O3G 8GT sing 3 n n 
PG O3B 8GT sing 4 n n 
O2G HOG2 8GT sing 5 n n 
O3G H3G 8GT sing 6 n n 
O3B PB 8GT sing 7 n n 
PB O1B 8GT doub 8 n n 
PB O2B 8GT sing 9 n n 
PB O3A 8GT sing 10 n n 
O2B HOB2 8GT sing 11 n n 
O3A PA 8GT sing 12 n n 
PA O1A 8GT doub 13 n n 
PA O2A 8GT sing 14 n n 
PA O5' 8GT sing 15 n n 
O2A HOA2 8GT sing 16 n n 
O5' C5' 8GT sing 17 n n 
C5' C4' 8GT sing 18 n n 
C5' "H5'1" 8GT sing 19 n n 
C5' "H5'2" 8GT sing 20 n n 
C4' O4' 8GT sing 21 n n 
C4' C3' 8GT sing 22 n n 
C4' H4' 8GT sing 23 n n 
O4' C1' 8GT sing 24 n n 
C3' O3' 8GT sing 25 n n 
C3' C2' 8GT sing 26 n n 
C3' H3' 8GT sing 27 n n 
O3' H2 8GT sing 28 n n 
C2' O2' 8GT sing 29 n n 
C2' C1' 8GT sing 30 n n 
C2' H1 8GT sing 31 n n 
O2' H2' 8GT sing 32 n n 
C1' N9 8GT sing 33 n n 
C1' H1' 8GT sing 34 n n 
N9 C8 8GT sing 35 n n 
N9 C4 8GT sing 36 n n 
C8 N7 8GT sing 37 n n 
C8 O8 8GT doub 38 n n 
N7 C5 8GT sing 39 n n 
N7 HN7 8GT sing 40 n n 
C5 C6 8GT sing 41 n n 
C5 C4 8GT doub 42 n n 
C6 O6 8GT doub 43 n n 
C6 N1 8GT sing 44 n n 
N1 C2 8GT sing 45 n n 
N1 HN1 8GT sing 46 n n 
C2 N2 8GT sing 47 n n 
C2 N3 8GT doub 48 n n 
N2 HN21 8GT sing 49 n n 
N2 HN22 8GT sing 50 n n 
N3 C4 8GT sing 51 n n 
#
_atom_sites.entry_id                     5K95 
_atom_sites.fract_transf_matrix[1][1]    0.010884 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8GT B 1 301 1 8GT 8GT . 
D 3 ZN B 1 302 258 ZN ZN . 
E 4 HOH A 1 401 71 HOH HOH . 
E 4 HOH A 2 402 94 HOH HOH . 
E 4 HOH A 3 403 98 HOH HOH . 
E 4 HOH A 4 404 61 HOH HOH . 
E 4 HOH A 5 405 68 HOH HOH . 
E 4 HOH A 6 406 34 HOH HOH . 
E 4 HOH A 7 407 8 HOH HOH . 
E 4 HOH A 8 408 24 HOH HOH . 
E 4 HOH A 9 409 83 HOH HOH . 
E 4 HOH A 10 410 23 HOH HOH . 
E 4 HOH A 11 411 72 HOH HOH . 
E 4 HOH A 12 412 49 HOH HOH . 
E 4 HOH A 13 413 1 HOH HOH . 
E 4 HOH A 14 414 47 HOH HOH . 
E 4 HOH A 15 415 37 HOH HOH . 
E 4 HOH A 16 416 32 HOH HOH . 
E 4 HOH A 17 417 26 HOH HOH . 
E 4 HOH A 18 418 14 HOH HOH . 
E 4 HOH A 19 419 69 HOH HOH . 
E 4 HOH A 20 420 75 HOH HOH . 
E 4 HOH A 21 421 11 HOH HOH . 
E 4 HOH A 22 422 28 HOH HOH . 
E 4 HOH A 23 423 18 HOH HOH . 
E 4 HOH A 24 424 39 HOH HOH . 
E 4 HOH A 25 425 65 HOH HOH . 
E 4 HOH A 26 426 17 HOH HOH . 
E 4 HOH A 27 427 103 HOH HOH . 
E 4 HOH A 28 428 102 HOH HOH . 
E 4 HOH A 29 429 56 HOH HOH . 
E 4 HOH A 30 430 73 HOH HOH . 
E 4 HOH A 31 431 58 HOH HOH . 
E 4 HOH A 32 432 84 HOH HOH . 
E 4 HOH A 33 433 50 HOH HOH . 
E 4 HOH A 34 434 3 HOH HOH . 
E 4 HOH A 35 435 20 HOH HOH . 
E 4 HOH A 36 436 42 HOH HOH . 
E 4 HOH A 37 437 78 HOH HOH . 
E 4 HOH A 38 438 45 HOH HOH . 
E 4 HOH A 39 439 57 HOH HOH . 
E 4 HOH A 40 440 86 HOH HOH . 
F 4 HOH B 1 401 60 HOH HOH . 
F 4 HOH B 2 402 77 HOH HOH . 
F 4 HOH B 3 403 16 HOH HOH . 
F 4 HOH B 4 404 31 HOH HOH . 
F 4 HOH B 5 405 87 HOH HOH . 
F 4 HOH B 6 406 36 HOH HOH . 
F 4 HOH B 7 407 82 HOH HOH . 
F 4 HOH B 8 408 10 HOH HOH . 
F 4 HOH B 9 409 101 HOH HOH . 
F 4 HOH B 10 410 19 HOH HOH . 
F 4 HOH B 11 411 40 HOH HOH . 
F 4 HOH B 12 412 74 HOH HOH . 
F 4 HOH B 13 413 88 HOH HOH . 
F 4 HOH B 14 414 30 HOH HOH . 
F 4 HOH B 15 415 48 HOH HOH . 
F 4 HOH B 16 416 33 HOH HOH . 
F 4 HOH B 17 417 2 HOH HOH . 
F 4 HOH B 18 418 6 HOH HOH . 
F 4 HOH B 19 419 9 HOH HOH . 
F 4 HOH B 20 420 35 HOH HOH . 
F 4 HOH B 21 421 70 HOH HOH . 
F 4 HOH B 22 422 51 HOH HOH . 
F 4 HOH B 23 423 7 HOH HOH . 
F 4 HOH B 24 424 43 HOH HOH . 
F 4 HOH B 25 425 22 HOH HOH . 
F 4 HOH B 26 426 67 HOH HOH . 
F 4 HOH B 27 427 62 HOH HOH . 
F 4 HOH B 28 428 95 HOH HOH . 
F 4 HOH B 29 429 25 HOH HOH . 
F 4 HOH B 30 430 90 HOH HOH . 
F 4 HOH B 31 431 81 HOH HOH . 
F 4 HOH B 32 432 104 HOH HOH . 
F 4 HOH B 33 433 41 HOH HOH . 
F 4 HOH B 34 434 29 HOH HOH . 
F 4 HOH B 35 435 97 HOH HOH . 
F 4 HOH B 36 436 44 HOH HOH . 
F 4 HOH B 37 437 52 HOH HOH . 
F 4 HOH B 38 438 110 HOH HOH . 
F 4 HOH B 39 439 100 HOH HOH . 
F 4 HOH B 40 440 109 HOH HOH . 
F 4 HOH B 41 441 99 HOH HOH . 
F 4 HOH B 42 442 96 HOH HOH . 
F 4 HOH B 43 443 38 HOH HOH . 
F 4 HOH B 44 444 89 HOH HOH . 
F 4 HOH B 45 445 15 HOH HOH . 
F 4 HOH B 46 446 53 HOH HOH . 
F 4 HOH B 47 447 12 HOH HOH . 
F 4 HOH B 48 448 106 HOH HOH . 
F 4 HOH B 49 449 85 HOH HOH . 
F 4 HOH B 50 450 91 HOH HOH . 
F 4 HOH B 51 451 105 HOH HOH . 
F 4 HOH B 52 452 108 HOH HOH . 
F 4 HOH B 53 453 80 HOH HOH . 
F 4 HOH B 54 454 107 HOH HOH . 
F 4 HOH B 55 455 76 HOH HOH . 
F 4 HOH B 56 456 111 HOH HOH . 
F 4 HOH B 57 457 79 HOH HOH . 
F 4 HOH B 58 458 4 HOH HOH . 
F 4 HOH B 59 459 27 HOH HOH . 
F 4 HOH B 60 460 63 HOH HOH . 
F 4 HOH B 61 461 5 HOH HOH . 
F 4 HOH B 62 462 46 HOH HOH . 
F 4 HOH B 63 463 21 HOH HOH . 
F 4 HOH B 64 464 92 HOH HOH . 
F 4 HOH B 65 465 93 HOH HOH . 
F 4 HOH B 66 466 66 HOH HOH . 
F 4 HOH B 67 467 13 HOH HOH . 
F 4 HOH B 68 468 54 HOH HOH . 
F 4 HOH B 69 469 59 HOH HOH . 
F 4 HOH B 70 470 55 HOH HOH . 
F 4 HOH B 71 471 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 8GT . . . C 2 50.745 27.286 1.24 0.6 107.65 ? PG 8GT 301 B 1 
HETATM 2 O O1G 8GT . . . C 2 51.625 27.615 0.051 0.6 112.31 ? O1G 8GT 301 B 1 
HETATM 3 O O2G 8GT . . . C 2 50.818 25.837 1.664 0.6 104.98 ? O2G 8GT 301 B 1 
HETATM 4 O O3G 8GT . . . C 2 49.325 27.793 1.133 0.6 99.28 ? O3G 8GT 301 B 1 
HETATM 5 O O3B 8GT . . . C 2 51.417 28.081 2.491 0.8 114.14 ? O3B 8GT 301 B 1 
HETATM 6 P PB 8GT . . . C 2 51.277 29.672 2.803 0.8 114.56 ? PB 8GT 301 B 1 
HETATM 7 O O1B 8GT . . . C 2 52.164 30.433 1.84 0.8 118 ? O1B 8GT 301 B 1 
HETATM 8 O O2B 8GT . . . C 2 51.464 29.897 4.287 0.8 106.23 ? O2B 8GT 301 B 1 
HETATM 9 O O3A 8GT . . . C 2 49.73 29.968 2.432 1 112.86 ? O3A 8GT 301 B 1 
HETATM 10 P PA 8GT . . . C 2 49.163 31.457 2.196 1 107.6 ? PA 8GT 301 B 1 
HETATM 11 O O1A 8GT . . . C 2 49.878 32.063 1.005 1 102.18 ? O1A 8GT 301 B 1 
HETATM 12 O O2A 8GT . . . C 2 47.657 31.351 2.166 1 106.53 ? O2A 8GT 301 B 1 
HETATM 13 O O5' 8GT . . . C 2 49.675 32.131 3.583 1 105.3 ? O5' 8GT 301 B 1 
HETATM 14 C C5' 8GT . . . C 2 49.323 33.423 4.084 1 92.06 ? C5' 8GT 301 B 1 
HETATM 15 C C4' 8GT . . . C 2 49.89 34.473 3.147 1 87.28 ? C4' 8GT 301 B 1 
HETATM 16 O O4' 8GT . . . C 2 48.851 35.317 2.654 1 90.83 ? O4' 8GT 301 B 1 
HETATM 17 C C3' 8GT . . . C 2 50.913 35.375 3.803 1 84.77 ? C3' 8GT 301 B 1 
HETATM 18 O O3' 8GT . . . C 2 52.221 34.783 3.762 1 88.1 ? O3' 8GT 301 B 1 
HETATM 19 C C2' 8GT . . . C 2 50.772 36.669 3.016 1 78.69 ? C2' 8GT 301 B 1 
HETATM 20 O O2' 8GT . . . C 2 51.666 36.764 1.903 1 72.53 ? O2' 8GT 301 B 1 
HETATM 21 C C1' 8GT . . . C 2 49.343 36.658 2.514 1 80.04 ? C1' 8GT 301 B 1 
HETATM 22 N N9 8GT . . . C 2 48.592 37.622 3.354 1 73.52 ? N9 8GT 301 B 1 
HETATM 23 C C8 8GT . . . C 2 48.307 38.885 3.067 1 67.16 ? C8 8GT 301 B 1 
HETATM 24 N N7 8GT . . . C 2 47.632 39.56 4.008 1 69.31 ? N7 8GT 301 B 1 
HETATM 25 C C5 8GT . . . C 2 47.452 38.673 4.995 1 68.8 ? C5 8GT 301 B 1 
HETATM 26 C C6 8GT . . . C 2 46.815 38.676 6.331 1 67.37 ? C6 8GT 301 B 1 
HETATM 27 O O6 8GT . . . C 2 46.27 39.704 6.768 1 74.39 ? O6 8GT 301 B 1 
HETATM 28 N N1 8GT . . . C 2 46.846 37.558 7.068 1 67.84 ? N1 8GT 301 B 1 
HETATM 29 C C2 8GT . . . C 2 47.443 36.427 6.633 1 68.53 ? C2 8GT 301 B 1 
HETATM 30 N N2 8GT . . . C 2 47.441 35.327 7.421 1 65.64 ? N2 8GT 301 B 1 
HETATM 31 N N3 8GT . . . C 2 48.051 36.344 5.419 1 71.55 ? N3 8GT 301 B 1 
HETATM 32 C C4 8GT . . . C 2 48.088 37.408 4.573 1 71.11 ? C4 8GT 301 B 1 
HETATM 33 O O8 8GT . . . C 2 48.654 39.405 1.945 1 56.95 ? O8 8GT 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#