data_5K9B # _model_server_result.job_id A-0h7x7NPTmzP4S8DyEK9w _model_server_result.datetime_utc '2024-10-19 12:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5K9B # _exptl.entry_id 5K9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K9B _cell.length_a 39.873 _cell.length_b 39.873 _cell.length_c 178.656 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 27 A ASP 26 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A OD1 ASP 132 A ASP 131 1_555 C MG MG . A MG 202 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 C MG MG . A MG 202 1_555 F O HOH . A HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 C MG MG . A MG 202 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc7 D MG MG . A MG 203 1_555 F O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 D MG MG . A MG 203 1_555 F O HOH . A HOH 381 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 D MG MG . A MG 203 1_555 F O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc10 D MG MG . A MG 203 1_555 F O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc11 D MG MG . A MG 203 1_555 F O HOH . A HOH 463 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc12 E MG MG . A MG 204 1_555 F O HOH . A HOH 302 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 E MG MG . A MG 204 1_555 F O HOH . A HOH 331 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc14 E MG MG . A MG 204 1_555 F O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc15 E MG MG . A MG 204 1_555 F O HOH . A HOH 444 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc16 E MG MG . A MG 204 1_555 F O HOH . A HOH 464 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc17 E MG MG . A MG 204 1_555 F O HOH . A HOH 474 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K9B _atom_sites.fract_transf_matrix[1][1] 0.02508 _atom_sites.fract_transf_matrix[1][2] 0.01448 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 1 FMN FMN . C 3 MG A 1 202 1 MG MG . D 3 MG A 1 203 2 MG MG . E 3 MG A 1 204 3 MG MG . F 4 HOH A 1 301 119 HOH HOH . F 4 HOH A 2 302 151 HOH HOH . F 4 HOH A 3 303 192 HOH HOH . F 4 HOH A 4 304 47 HOH HOH . F 4 HOH A 5 305 80 HOH HOH . F 4 HOH A 6 306 182 HOH HOH . F 4 HOH A 7 307 95 HOH HOH . F 4 HOH A 8 308 58 HOH HOH . F 4 HOH A 9 309 104 HOH HOH . F 4 HOH A 10 310 138 HOH HOH . F 4 HOH A 11 311 129 HOH HOH . F 4 HOH A 12 312 45 HOH HOH . F 4 HOH A 13 313 52 HOH HOH . F 4 HOH A 14 314 180 HOH HOH . F 4 HOH A 15 315 128 HOH HOH . F 4 HOH A 16 316 133 HOH HOH . F 4 HOH A 17 317 113 HOH HOH . F 4 HOH A 18 318 38 HOH HOH . F 4 HOH A 19 319 64 HOH HOH . F 4 HOH A 20 320 91 HOH HOH . F 4 HOH A 21 321 131 HOH HOH . F 4 HOH A 22 322 162 HOH HOH . F 4 HOH A 23 323 31 HOH HOH . F 4 HOH A 24 324 97 HOH HOH . F 4 HOH A 25 325 110 HOH HOH . F 4 HOH A 26 326 22 HOH HOH . F 4 HOH A 27 327 172 HOH HOH . F 4 HOH A 28 328 99 HOH HOH . F 4 HOH A 29 329 10 HOH HOH . F 4 HOH A 30 330 57 HOH HOH . F 4 HOH A 31 331 117 HOH HOH . F 4 HOH A 32 332 40 HOH HOH . F 4 HOH A 33 333 11 HOH HOH . F 4 HOH A 34 334 92 HOH HOH . F 4 HOH A 35 335 96 HOH HOH . F 4 HOH A 36 336 44 HOH HOH . F 4 HOH A 37 337 4 HOH HOH . F 4 HOH A 38 338 32 HOH HOH . F 4 HOH A 39 339 90 HOH HOH . F 4 HOH A 40 340 60 HOH HOH . F 4 HOH A 41 341 67 HOH HOH . F 4 HOH A 42 342 49 HOH HOH . F 4 HOH A 43 343 6 HOH HOH . F 4 HOH A 44 344 9 HOH HOH . F 4 HOH A 45 345 12 HOH HOH . F 4 HOH A 46 346 181 HOH HOH . F 4 HOH A 47 347 167 HOH HOH . F 4 HOH A 48 348 15 HOH HOH . F 4 HOH A 49 349 48 HOH HOH . F 4 HOH A 50 350 27 HOH HOH . F 4 HOH A 51 351 78 HOH HOH . F 4 HOH A 52 352 143 HOH HOH . F 4 HOH A 53 353 72 HOH HOH . F 4 HOH A 54 354 93 HOH HOH . F 4 HOH A 55 355 74 HOH HOH . F 4 HOH A 56 356 65 HOH HOH . F 4 HOH A 57 357 28 HOH HOH . F 4 HOH A 58 358 51 HOH HOH . F 4 HOH A 59 359 33 HOH HOH . F 4 HOH A 60 360 145 HOH HOH . F 4 HOH A 61 361 76 HOH HOH . F 4 HOH A 62 362 25 HOH HOH . F 4 HOH A 63 363 84 HOH HOH . F 4 HOH A 64 364 41 HOH HOH . F 4 HOH A 65 365 82 HOH HOH . F 4 HOH A 66 366 8 HOH HOH . F 4 HOH A 67 367 26 HOH HOH . F 4 HOH A 68 368 17 HOH HOH . F 4 HOH A 69 369 173 HOH HOH . F 4 HOH A 70 370 169 HOH HOH . F 4 HOH A 71 371 126 HOH HOH . F 4 HOH A 72 372 100 HOH HOH . F 4 HOH A 73 373 161 HOH HOH . F 4 HOH A 74 374 42 HOH HOH . F 4 HOH A 75 375 34 HOH HOH . F 4 HOH A 76 376 108 HOH HOH . F 4 HOH A 77 377 176 HOH HOH . F 4 HOH A 78 378 62 HOH HOH . F 4 HOH A 79 379 178 HOH HOH . F 4 HOH A 80 380 61 HOH HOH . F 4 HOH A 81 381 63 HOH HOH . F 4 HOH A 82 382 89 HOH HOH . F 4 HOH A 83 383 101 HOH HOH . F 4 HOH A 84 384 111 HOH HOH . F 4 HOH A 85 385 122 HOH HOH . F 4 HOH A 86 386 53 HOH HOH . F 4 HOH A 87 387 50 HOH HOH . F 4 HOH A 88 388 170 HOH HOH . F 4 HOH A 89 389 24 HOH HOH . F 4 HOH A 90 390 115 HOH HOH . F 4 HOH A 91 391 54 HOH HOH . F 4 HOH A 92 392 193 HOH HOH . F 4 HOH A 93 393 190 HOH HOH . F 4 HOH A 94 394 43 HOH HOH . F 4 HOH A 95 395 23 HOH HOH . F 4 HOH A 96 396 20 HOH HOH . F 4 HOH A 97 397 69 HOH HOH . F 4 HOH A 98 398 106 HOH HOH . F 4 HOH A 99 399 30 HOH HOH . F 4 HOH A 100 400 36 HOH HOH . F 4 HOH A 101 401 3 HOH HOH . F 4 HOH A 102 402 127 HOH HOH . F 4 HOH A 103 403 107 HOH HOH . F 4 HOH A 104 404 5 HOH HOH . F 4 HOH A 105 405 70 HOH HOH . F 4 HOH A 106 406 14 HOH HOH . F 4 HOH A 107 407 136 HOH HOH . F 4 HOH A 108 408 103 HOH HOH . F 4 HOH A 109 409 88 HOH HOH . F 4 HOH A 110 410 66 HOH HOH . F 4 HOH A 111 411 68 HOH HOH . F 4 HOH A 112 412 81 HOH HOH . F 4 HOH A 113 413 75 HOH HOH . F 4 HOH A 114 414 77 HOH HOH . F 4 HOH A 115 415 179 HOH HOH . F 4 HOH A 116 416 118 HOH HOH . F 4 HOH A 117 417 85 HOH HOH . F 4 HOH A 118 418 154 HOH HOH . F 4 HOH A 119 419 35 HOH HOH . F 4 HOH A 120 420 59 HOH HOH . F 4 HOH A 121 421 168 HOH HOH . F 4 HOH A 122 422 37 HOH HOH . F 4 HOH A 123 423 123 HOH HOH . F 4 HOH A 124 424 2 HOH HOH . F 4 HOH A 125 425 71 HOH HOH . F 4 HOH A 126 426 46 HOH HOH . F 4 HOH A 127 427 94 HOH HOH . F 4 HOH A 128 428 130 HOH HOH . F 4 HOH A 129 429 83 HOH HOH . F 4 HOH A 130 430 13 HOH HOH . F 4 HOH A 131 431 153 HOH HOH . F 4 HOH A 132 432 7 HOH HOH . F 4 HOH A 133 433 19 HOH HOH . F 4 HOH A 134 434 160 HOH HOH . F 4 HOH A 135 435 134 HOH HOH . F 4 HOH A 136 436 102 HOH HOH . F 4 HOH A 137 437 29 HOH HOH . F 4 HOH A 138 438 125 HOH HOH . F 4 HOH A 139 439 142 HOH HOH . F 4 HOH A 140 440 157 HOH HOH . F 4 HOH A 141 441 1 HOH HOH . F 4 HOH A 142 442 150 HOH HOH . F 4 HOH A 143 443 146 HOH HOH . F 4 HOH A 144 444 184 HOH HOH . F 4 HOH A 145 445 158 HOH HOH . F 4 HOH A 146 446 139 HOH HOH . F 4 HOH A 147 447 56 HOH HOH . F 4 HOH A 148 448 156 HOH HOH . F 4 HOH A 149 449 73 HOH HOH . F 4 HOH A 150 450 174 HOH HOH . F 4 HOH A 151 451 163 HOH HOH . F 4 HOH A 152 452 98 HOH HOH . F 4 HOH A 153 453 148 HOH HOH . F 4 HOH A 154 454 120 HOH HOH . F 4 HOH A 155 455 165 HOH HOH . F 4 HOH A 156 456 39 HOH HOH . F 4 HOH A 157 457 87 HOH HOH . F 4 HOH A 158 458 79 HOH HOH . F 4 HOH A 159 459 149 HOH HOH . F 4 HOH A 160 460 183 HOH HOH . F 4 HOH A 161 461 171 HOH HOH . F 4 HOH A 162 462 114 HOH HOH . F 4 HOH A 163 463 112 HOH HOH . F 4 HOH A 164 464 147 HOH HOH . F 4 HOH A 165 465 186 HOH HOH . F 4 HOH A 166 466 132 HOH HOH . F 4 HOH A 167 467 191 HOH HOH . F 4 HOH A 168 468 121 HOH HOH . F 4 HOH A 169 469 55 HOH HOH . F 4 HOH A 170 470 141 HOH HOH . F 4 HOH A 171 471 16 HOH HOH . F 4 HOH A 172 472 189 HOH HOH . F 4 HOH A 173 473 137 HOH HOH . F 4 HOH A 174 474 86 HOH HOH . F 4 HOH A 175 475 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.743 _atom_site.Cartn_y 7.46 _atom_site.Cartn_z 5.983 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #