data_5K9I
#
_model_server_result.job_id            BGR5UoeEaRYM7xmjem2u-Q 
_model_server_result.datetime_utc      '2025-01-12 15:04:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k9i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5K9I 
#
_exptl.entry_id    5K9I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.597 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(4-{4-[(3-cyclopropyl-1H-pyrazol-5-yl)amino]-6-[(prop-2-yn-1-yl)carbamoyl]pyrimidin-2-yl}piperazin-1-yl)methyl]benzene-1-sulfonyl fluoride' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.85 
_cell.angle_beta          88.75 
_cell.angle_gamma         89.93 
_cell.entry_id            5K9I 
_cell.length_a            42.012 
_cell.length_b            63.306 
_cell.length_c            73.77 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K9I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 48 A LYS 295 1_555 C SBH O44 . A O44 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
covale ? covale2 B NZ LYS 48 B LYS 295 1_555 D SBH O44 . B O44 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? 
#
_chem_comp.formula           'C25 H27 F N8 O3 S' 
_chem_comp.formula_weight    538.597 
_chem_comp.id                O44 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(4-{4-[(3-cyclopropyl-1H-pyrazol-5-yl)amino]-6-[(prop-2-yn-1-yl)carbamoyl]pyrimidin-2-yl}piperazin-1-yl)methyl]benzene-1-sulfonyl fluoride' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAM CAL O44 sing 237 n n 
CAM CAN O44 sing 238 n n 
CAL CAK O44 sing 239 n n 
CAL CAN O44 sing 240 n n 
NAO CAK O44 doub 241 n y 
NAO NAP O44 sing 242 n y 
CAK CAJ O44 sing 243 n y 
NAP CAI O44 sing 244 n y 
CAJ CAI O44 doub 245 n y 
SBH OBI O44 doub 246 n n 
SBH OBJ O44 doub 247 n n 
SBH CBE O44 sing 248 n n 
CAI NAH O44 sing 249 n n 
CBF CBE O44 doub 250 n y 
CBF CBG O44 sing 251 n y 
CBE CBD O44 sing 252 n y 
NAH C4 O44 sing 253 n n 
CBG CBB O44 doub 254 n y 
C4 N3 O44 doub 255 n y 
C4 C5 O44 sing 256 n y 
N3 C2 O44 sing 257 n y 
CBD CBC O44 doub 258 n y 
CAW CAV O44 sing 259 n n 
CAW NAX O44 sing 260 n n 
C5 C6 O44 doub 261 n y 
CBB CBC O44 sing 262 n y 
CBB CBA O44 sing 263 n n 
CAV NAA O44 sing 264 n n 
C2 NAA O44 sing 265 n n 
C2 N1 O44 doub 266 n y 
CBA NAX O44 sing 267 n n 
C6 N1 O44 sing 268 n y 
C6 CAQ O44 sing 269 n n 
NAA CAZ O44 sing 270 n n 
OAU CAQ O44 doub 271 n n 
NAX CAY O44 sing 272 n n 
CAY CAZ O44 sing 273 n n 
CAQ NAR O44 sing 274 n n 
NAR CAS O44 sing 275 n n 
CAS CAT O44 sing 276 n n 
CAT CBL O44 trip 277 n n 
CBD H3 O44 sing 278 n n 
CBC H4 O44 sing 279 n n 
CBF H5 O44 sing 280 n n 
CBG H6 O44 sing 281 n n 
CBA H7 O44 sing 282 n n 
CBA H8 O44 sing 283 n n 
CAY H10 O44 sing 284 n n 
CAY H11 O44 sing 285 n n 
CAZ H12 O44 sing 286 n n 
CAZ H13 O44 sing 287 n n 
CAW H14 O44 sing 288 n n 
CAW H15 O44 sing 289 n n 
CAV H16 O44 sing 290 n n 
CAV H17 O44 sing 291 n n 
NAR H18 O44 sing 292 n n 
CAS H19 O44 sing 293 n n 
CAS H20 O44 sing 294 n n 
CBL H21 O44 sing 295 n n 
C5 H22 O44 sing 296 n n 
NAH H23 O44 sing 297 n n 
CAJ H24 O44 sing 298 n n 
NAP H25 O44 sing 299 n n 
CAL H26 O44 sing 300 n n 
CAN H27 O44 sing 301 n n 
CAN H28 O44 sing 302 n n 
CAM H29 O44 sing 303 n n 
CAM H30 O44 sing 304 n n 
SBH F1 O44 sing 305 n n 
#
_atom_sites.entry_id                     5K9I 
_atom_sites.fract_transf_matrix[1][1]    0.023803 
_atom_sites.fract_transf_matrix[1][2]    -0.00003 
_atom_sites.fract_transf_matrix[1][3]    -0.000526 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015796 
_atom_sites.fract_transf_matrix[2][3]    -0.003114 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 O44 A 1 601 1 O44 O44 . 
D 2 O44 B 1 601 2 O44 O44 . 
E 3 HOH A 1 701 27 HOH HOH . 
E 3 HOH A 2 702 41 HOH HOH . 
E 3 HOH A 3 703 35 HOH HOH . 
E 3 HOH A 4 704 16 HOH HOH . 
E 3 HOH A 5 705 25 HOH HOH . 
E 3 HOH A 6 706 42 HOH HOH . 
E 3 HOH A 7 707 11 HOH HOH . 
E 3 HOH A 8 708 46 HOH HOH . 
E 3 HOH A 9 709 24 HOH HOH . 
E 3 HOH A 10 710 57 HOH HOH . 
E 3 HOH A 11 711 30 HOH HOH . 
E 3 HOH A 12 712 40 HOH HOH . 
E 3 HOH A 13 713 8 HOH HOH . 
E 3 HOH A 14 714 9 HOH HOH . 
E 3 HOH A 15 715 7 HOH HOH . 
E 3 HOH A 16 716 55 HOH HOH . 
E 3 HOH A 17 717 10 HOH HOH . 
E 3 HOH A 18 718 63 HOH HOH . 
E 3 HOH A 19 719 4 HOH HOH . 
E 3 HOH A 20 720 43 HOH HOH . 
E 3 HOH A 21 721 34 HOH HOH . 
E 3 HOH A 22 722 26 HOH HOH . 
E 3 HOH A 23 723 49 HOH HOH . 
E 3 HOH A 24 724 52 HOH HOH . 
E 3 HOH A 25 725 23 HOH HOH . 
E 3 HOH A 26 726 36 HOH HOH . 
E 3 HOH A 27 727 20 HOH HOH . 
E 3 HOH A 28 728 13 HOH HOH . 
E 3 HOH A 29 729 37 HOH HOH . 
E 3 HOH A 30 730 21 HOH HOH . 
E 3 HOH A 31 731 51 HOH HOH . 
E 3 HOH A 32 732 1 HOH HOH . 
E 3 HOH A 33 733 44 HOH HOH . 
E 3 HOH A 34 734 17 HOH HOH . 
E 3 HOH A 35 735 54 HOH HOH . 
F 3 HOH B 1 701 22 HOH HOH . 
F 3 HOH B 2 702 60 HOH HOH . 
F 3 HOH B 3 703 32 HOH HOH . 
F 3 HOH B 4 704 2 HOH HOH . 
F 3 HOH B 5 705 5 HOH HOH . 
F 3 HOH B 6 706 33 HOH HOH . 
F 3 HOH B 7 707 65 HOH HOH . 
F 3 HOH B 8 708 39 HOH HOH . 
F 3 HOH B 9 709 56 HOH HOH . 
F 3 HOH B 10 710 19 HOH HOH . 
F 3 HOH B 11 711 61 HOH HOH . 
F 3 HOH B 12 712 28 HOH HOH . 
F 3 HOH B 13 713 59 HOH HOH . 
F 3 HOH B 14 714 58 HOH HOH . 
F 3 HOH B 15 715 48 HOH HOH . 
F 3 HOH B 16 716 45 HOH HOH . 
F 3 HOH B 17 717 47 HOH HOH . 
F 3 HOH B 18 718 6 HOH HOH . 
F 3 HOH B 19 719 12 HOH HOH . 
F 3 HOH B 20 720 64 HOH HOH . 
F 3 HOH B 21 721 29 HOH HOH . 
F 3 HOH B 22 722 14 HOH HOH . 
F 3 HOH B 23 723 62 HOH HOH . 
F 3 HOH B 24 724 53 HOH HOH . 
F 3 HOH B 25 725 38 HOH HOH . 
F 3 HOH B 26 726 31 HOH HOH . 
F 3 HOH B 27 727 50 HOH HOH . 
F 3 HOH B 28 728 66 HOH HOH . 
F 3 HOH B 29 729 18 HOH HOH . 
F 3 HOH B 30 730 15 HOH HOH . 
F 3 HOH B 31 731 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OBJ O44 . . . D 2 11.265 21.561 29.779 1 84.86 ? OBJ O44 601 B 1 
HETATM 2 S SBH O44 . . . D 2 10.126 21.143 30.543 1 81.67 ? SBH O44 601 B 1 
HETATM 3 O OBI O44 . . . D 2 10.46 20.06 31.427 1 73.1 ? OBI O44 601 B 1 
HETATM 4 C CBE O44 . . . D 2 8.941 20.653 29.588 1 72.51 ? CBE O44 601 B 1 
HETATM 5 C CBD O44 . . . D 2 8.639 21.325 28.402 1 70.28 ? CBD O44 601 B 1 
HETATM 6 C CBC O44 . . . D 2 7.606 20.866 27.582 1 68.28 ? CBC O44 601 B 1 
HETATM 7 C CBF O44 . . . D 2 8.212 19.523 29.949 1 72.03 ? CBF O44 601 B 1 
HETATM 8 C CBG O44 . . . D 2 7.181 19.07 29.132 1 71.05 ? CBG O44 601 B 1 
HETATM 9 C CBB O44 . . . D 2 6.863 19.741 27.952 1 66.66 ? CBB O44 601 B 1 
HETATM 10 C CBA O44 . . . D 2 5.732 19.185 27.107 1 59.06 ? CBA O44 601 B 1 
HETATM 11 N NAX O44 . . . D 2 4.706 20.151 26.66 1 61.69 ? NAX O44 601 B 1 
HETATM 12 C CAY O44 . . . D 2 3.5 19.368 26.356 1 54.56 ? CAY O44 601 B 1 
HETATM 13 C CAZ O44 . . . D 2 2.445 20.238 25.688 1 47.32 ? CAZ O44 601 B 1 
HETATM 14 C CAW O44 . . . D 2 4.318 21.122 27.694 1 53.78 ? CAW O44 601 B 1 
HETATM 15 C CAV O44 . . . D 2 3.392 22.166 27.084 1 44.36 ? CAV O44 601 B 1 
HETATM 16 N NAA O44 . . . D 2 2.268 21.446 26.487 1 47.75 ? NAA O44 601 B 1 
HETATM 17 C C2 O44 . . . D 2 0.965 21.93 26.65 1 39.62 ? C2 O44 601 B 1 
HETATM 18 N N3 O44 . . . D 2 0.751 23.042 27.415 1 26.66 ? N3 O44 601 B 1 
HETATM 19 N N1 O44 . . . D 2 -0.057 21.257 26.042 1 33.29 ? N1 O44 601 B 1 
HETATM 20 C C6 O44 . . . D 2 -1.325 21.707 26.205 1 33.56 ? C6 O44 601 B 1 
HETATM 21 C CAQ O44 . . . D 2 -2.509 21.043 25.569 1 34.61 ? CAQ O44 601 B 1 
HETATM 22 N NAR O44 . . . D 2 -2.384 19.953 24.807 1 39.5 ? NAR O44 601 B 1 
HETATM 23 C CAS O44 . . . D 2 -3.524 19.326 24.141 1 45.35 ? CAS O44 601 B 1 
HETATM 24 C CAT O44 . . . D 2 -4.552 20.285 23.674 1 47.6 ? CAT O44 601 B 1 
HETATM 25 C CBL O44 . . . D 2 -5.444 21.144 23.318 1 43.46 ? CBL O44 601 B 1 
HETATM 26 O OAU O44 . . . D 2 -3.592 21.554 25.791 1 40.33 ? OAU O44 601 B 1 
HETATM 27 C C5 O44 . . . D 2 -1.561 22.848 26.978 1 32.58 ? C5 O44 601 B 1 
HETATM 28 C C4 O44 . . . D 2 -0.506 23.52 27.597 1 26.53 ? C4 O44 601 B 1 
HETATM 29 N NAH O44 . . . D 2 -0.787 24.623 28.352 1 26.61 ? NAH O44 601 B 1 
HETATM 30 C CAI O44 . . . D 2 0.116 25.334 29.085 1 26.59 ? CAI O44 601 B 1 
HETATM 31 C CAJ O44 . . . D 2 1.419 25.145 29.561 1 28.09 ? CAJ O44 601 B 1 
HETATM 32 N NAP O44 . . . D 2 -0.358 26.539 29.438 1 29.51 ? NAP O44 601 B 1 
HETATM 33 N NAO O44 . . . D 2 0.663 27.178 30.172 1 29.79 ? NAO O44 601 B 1 
HETATM 34 C CAK O44 . . . D 2 1.717 26.335 30.23 1 30.2 ? CAK O44 601 B 1 
HETATM 35 C CAL O44 . . . D 2 3.049 26.498 30.905 1 33.82 ? CAL O44 601 B 1 
HETATM 36 C CAN O44 . . . D 2 4.25 26.119 30.042 1 42.08 ? CAN O44 601 B 1 
HETATM 37 C CAM O44 . . . D 2 3.754 25.155 31.111 1 33.97 ? CAM O44 601 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           37 
#