data_5K9R # _model_server_result.job_id c7r1o9CUbwfVEDXJQT5lKg _model_server_result.datetime_utc '2024-10-11 03:13:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":802}' # _entry.id 5K9R # _exptl.entry_id 5K9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K9R _cell.length_a 49.46 _cell.length_b 81.2 _cell.length_c 160.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 41 B CYS 488 1_555 B SG CYS 45 B CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc1 A NE2 HIS 72 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A NE2 HIS 106 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 A OD1 ASP 107 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 A OD2 ASP 107 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 A OD1 ASP 217 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 B NE2 HIS 72 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 B NE2 HIS 106 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc8 B OD1 ASP 107 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 B OD2 ASP 107 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 B OD1 ASP 217 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc11 B OD2 ASP 217 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc12 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 D MG MG . A MG 802 1_555 I O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc14 D MG MG . A MG 802 1_555 I O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc15 D MG MG . A MG 802 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc16 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 G MG MG . B MG 802 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K9R _atom_sites.fract_transf_matrix[1][1] 0.020218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 2 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 6RC A 1 803 1 6RC DRG . F 2 ZN B 1 801 1 ZN ZN . G 3 MG B 1 802 1 MG MG . H 4 6RC B 1 803 1 6RC DRG . I 5 HOH A 1 901 52 HOH HOH . I 5 HOH A 2 902 46 HOH HOH . I 5 HOH A 3 903 20 HOH HOH . I 5 HOH A 4 904 42 HOH HOH . I 5 HOH A 5 905 27 HOH HOH . I 5 HOH A 6 906 47 HOH HOH . I 5 HOH A 7 907 7 HOH HOH . I 5 HOH A 8 908 4 HOH HOH . I 5 HOH A 9 909 43 HOH HOH . I 5 HOH A 10 910 5 HOH HOH . I 5 HOH A 11 911 21 HOH HOH . I 5 HOH A 12 912 45 HOH HOH . I 5 HOH A 13 913 26 HOH HOH . I 5 HOH A 14 914 22 HOH HOH . I 5 HOH A 15 915 29 HOH HOH . I 5 HOH A 16 916 23 HOH HOH . I 5 HOH A 17 917 6 HOH HOH . I 5 HOH A 18 918 34 HOH HOH . I 5 HOH A 19 919 13 HOH HOH . I 5 HOH A 20 920 8 HOH HOH . I 5 HOH A 21 921 54 HOH HOH . I 5 HOH A 22 922 32 HOH HOH . I 5 HOH A 23 923 18 HOH HOH . I 5 HOH A 24 924 12 HOH HOH . I 5 HOH A 25 925 9 HOH HOH . I 5 HOH A 26 926 50 HOH HOH . I 5 HOH A 27 927 44 HOH HOH . I 5 HOH A 28 928 49 HOH HOH . I 5 HOH A 29 929 11 HOH HOH . I 5 HOH A 30 930 15 HOH HOH . I 5 HOH A 31 931 55 HOH HOH . I 5 HOH A 32 932 58 HOH HOH . J 5 HOH B 1 901 41 HOH HOH . J 5 HOH B 2 902 37 HOH HOH . J 5 HOH B 3 903 40 HOH HOH . J 5 HOH B 4 904 14 HOH HOH . J 5 HOH B 5 905 36 HOH HOH . J 5 HOH B 6 906 31 HOH HOH . J 5 HOH B 7 907 24 HOH HOH . J 5 HOH B 8 908 10 HOH HOH . J 5 HOH B 9 909 16 HOH HOH . J 5 HOH B 10 910 33 HOH HOH . J 5 HOH B 11 911 56 HOH HOH . J 5 HOH B 12 912 39 HOH HOH . J 5 HOH B 13 913 1 HOH HOH . J 5 HOH B 14 914 2 HOH HOH . J 5 HOH B 15 915 35 HOH HOH . J 5 HOH B 16 916 53 HOH HOH . J 5 HOH B 17 917 17 HOH HOH . J 5 HOH B 18 918 30 HOH HOH . J 5 HOH B 19 919 57 HOH HOH . J 5 HOH B 20 920 28 HOH HOH . J 5 HOH B 21 921 25 HOH HOH . J 5 HOH B 22 922 3 HOH HOH . J 5 HOH B 23 923 48 HOH HOH . J 5 HOH B 24 924 19 HOH HOH . J 5 HOH B 25 925 51 HOH HOH . J 5 HOH B 26 926 38 HOH HOH . J 5 HOH B 27 927 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.68 _atom_site.Cartn_y 35.025 _atom_site.Cartn_z -31.938 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.15 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #