data_5K9R # _model_server_result.job_id ymOhptarH5cdbNJjRAuhAw _model_server_result.datetime_utc '2024-10-11 03:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":803}' # _entry.id 5K9R # _exptl.entry_id 5K9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.538 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[5-[1-(2-methoxyethyl)pyrazol-4-yl]-2-(quinolin-2-yloxymethyl)imidazo[1,2-a]pyrazin-8-yl]morpholine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5K9R _cell.length_a 49.46 _cell.length_b 81.2 _cell.length_c 160.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 41 B CYS 488 1_555 B SG CYS 45 B CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc1 A NE2 HIS 72 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A NE2 HIS 106 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 A OD1 ASP 107 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 A OD2 ASP 107 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 A OD1 ASP 217 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 B NE2 HIS 72 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 B NE2 HIS 106 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc8 B OD1 ASP 107 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 B OD2 ASP 107 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc10 B OD1 ASP 217 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc11 B OD2 ASP 217 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc12 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 D MG MG . A MG 802 1_555 I O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc14 D MG MG . A MG 802 1_555 I O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc15 D MG MG . A MG 802 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc16 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 G MG MG . B MG 802 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C26 H27 N7 O3' _chem_comp.formula_weight 485.538 _chem_comp.id 6RC _chem_comp.mon_nstd_flag . _chem_comp.name 4-[5-[1-(2-methoxyethyl)pyrazol-4-yl]-2-(quinolin-2-yloxymethyl)imidazo[1,2-a]pyrazin-8-yl]morpholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K9R _atom_sites.fract_transf_matrix[1][1] 0.020218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 2 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 6RC A 1 803 1 6RC DRG . F 2 ZN B 1 801 1 ZN ZN . G 3 MG B 1 802 1 MG MG . H 4 6RC B 1 803 1 6RC DRG . I 5 HOH A 1 901 52 HOH HOH . I 5 HOH A 2 902 46 HOH HOH . I 5 HOH A 3 903 20 HOH HOH . I 5 HOH A 4 904 42 HOH HOH . I 5 HOH A 5 905 27 HOH HOH . I 5 HOH A 6 906 47 HOH HOH . I 5 HOH A 7 907 7 HOH HOH . I 5 HOH A 8 908 4 HOH HOH . I 5 HOH A 9 909 43 HOH HOH . I 5 HOH A 10 910 5 HOH HOH . I 5 HOH A 11 911 21 HOH HOH . I 5 HOH A 12 912 45 HOH HOH . I 5 HOH A 13 913 26 HOH HOH . I 5 HOH A 14 914 22 HOH HOH . I 5 HOH A 15 915 29 HOH HOH . I 5 HOH A 16 916 23 HOH HOH . I 5 HOH A 17 917 6 HOH HOH . I 5 HOH A 18 918 34 HOH HOH . I 5 HOH A 19 919 13 HOH HOH . I 5 HOH A 20 920 8 HOH HOH . I 5 HOH A 21 921 54 HOH HOH . I 5 HOH A 22 922 32 HOH HOH . I 5 HOH A 23 923 18 HOH HOH . I 5 HOH A 24 924 12 HOH HOH . I 5 HOH A 25 925 9 HOH HOH . I 5 HOH A 26 926 50 HOH HOH . I 5 HOH A 27 927 44 HOH HOH . I 5 HOH A 28 928 49 HOH HOH . I 5 HOH A 29 929 11 HOH HOH . I 5 HOH A 30 930 15 HOH HOH . I 5 HOH A 31 931 55 HOH HOH . I 5 HOH A 32 932 58 HOH HOH . J 5 HOH B 1 901 41 HOH HOH . J 5 HOH B 2 902 37 HOH HOH . J 5 HOH B 3 903 40 HOH HOH . J 5 HOH B 4 904 14 HOH HOH . J 5 HOH B 5 905 36 HOH HOH . J 5 HOH B 6 906 31 HOH HOH . J 5 HOH B 7 907 24 HOH HOH . J 5 HOH B 8 908 10 HOH HOH . J 5 HOH B 9 909 16 HOH HOH . J 5 HOH B 10 910 33 HOH HOH . J 5 HOH B 11 911 56 HOH HOH . J 5 HOH B 12 912 39 HOH HOH . J 5 HOH B 13 913 1 HOH HOH . J 5 HOH B 14 914 2 HOH HOH . J 5 HOH B 15 915 35 HOH HOH . J 5 HOH B 16 916 53 HOH HOH . J 5 HOH B 17 917 17 HOH HOH . J 5 HOH B 18 918 30 HOH HOH . J 5 HOH B 19 919 57 HOH HOH . J 5 HOH B 20 920 28 HOH HOH . J 5 HOH B 21 921 25 HOH HOH . J 5 HOH B 22 922 3 HOH HOH . J 5 HOH B 23 923 48 HOH HOH . J 5 HOH B 24 924 19 HOH HOH . J 5 HOH B 25 925 51 HOH HOH . J 5 HOH B 26 926 38 HOH HOH . J 5 HOH B 27 927 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAZ 6RC . . . H 4 17.94 35.557 -40.716 1 50.44 ? CAZ 6RC 803 B 1 HETATM 2 O OAY 6RC . . . H 4 17.224 34.353 -40.461 1 50.12 ? OAY 6RC 803 B 1 HETATM 3 C CAX 6RC . . . H 4 18.045 33.392 -39.797 1 49.92 ? CAX 6RC 803 B 1 HETATM 4 C CAW 6RC . . . H 4 17.267 32.089 -39.654 1 49.38 ? CAW 6RC 803 B 1 HETATM 5 N NAS 6RC . . . H 4 18.087 31.02 -39.124 1 49.19 ? NAS 6RC 803 B 1 HETATM 6 C CAT 6RC . . . H 4 17.968 30.418 -37.903 1 47.9 ? CAT 6RC 803 B 1 HETATM 7 N NAV 6RC . . . H 4 19.096 30.53 -39.872 1 48.66 ? NAV 6RC 803 B 1 HETATM 8 C CAU 6RC . . . H 4 19.656 29.619 -39.074 1 48.4 ? CAU 6RC 803 B 1 HETATM 9 C CAR 6RC . . . H 4 18.981 29.485 -37.84 1 46.23 ? CAR 6RC 803 B 1 HETATM 10 C CAF 6RC . . . H 4 19.288 28.615 -36.745 1 46.05 ? CAF 6RC 803 B 1 HETATM 11 C CAE 6RC . . . H 4 19.231 29.012 -35.454 1 45.27 ? CAE 6RC 803 B 1 HETATM 12 N NAD 6RC . . . H 4 19.569 28.242 -34.357 1 45.47 ? NAD 6RC 803 B 1 HETATM 13 C CAC 6RC . . . H 4 20.025 27.012 -34.522 1 45.24 ? CAC 6RC 803 B 1 HETATM 14 N NAQ 6RC . . . H 4 20.42 26.284 -33.395 1 45.15 ? NAQ 6RC 803 B 1 HETATM 15 C CAP 6RC . . . H 4 21.419 25.212 -33.397 1 44.69 ? CAP 6RC 803 B 1 HETATM 16 C CAO 6RC . . . H 4 20.821 23.965 -32.753 1 44.95 ? CAO 6RC 803 B 1 HETATM 17 O OAN 6RC . . . H 4 20.372 24.261 -31.423 1 45.73 ? OAN 6RC 803 B 1 HETATM 18 C CAM 6RC . . . H 4 19.358 25.274 -31.44 1 45.62 ? CAM 6RC 803 B 1 HETATM 19 C CAL 6RC . . . H 4 19.889 26.57 -32.055 1 45.25 ? CAL 6RC 803 B 1 HETATM 20 C CAB 6RC . . . H 4 20.076 26.496 -35.892 1 45.13 ? CAB 6RC 803 B 1 HETATM 21 N NAI 6RC . . . H 4 20.409 25.282 -36.282 1 45.29 ? NAI 6RC 803 B 1 HETATM 22 N NAA 6RC . . . H 4 19.694 27.293 -36.951 1 45.54 ? NAA 6RC 803 B 1 HETATM 23 C CAG 6RC . . . H 4 19.798 26.518 -38.076 1 44.74 ? CAG 6RC 803 B 1 HETATM 24 C CAH 6RC . . . H 4 20.257 25.29 -37.649 1 45.2 ? CAH 6RC 803 B 1 HETATM 25 C CAJ 6RC . . . H 4 20.535 24.09 -38.486 1 45.01 ? CAJ 6RC 803 B 1 HETATM 26 O OAK 6RC . . . H 4 21.348 24.456 -39.608 1 42.31 ? OAK 6RC 803 B 1 HETATM 27 C CBA 6RC . . . H 4 21.281 23.591 -40.685 1 41.72 ? CBA 6RC 803 B 1 HETATM 28 C CBE 6RC . . . H 4 21.864 24.042 -41.856 1 41.44 ? CBE 6RC 803 B 1 HETATM 29 C CBD 6RC . . . H 4 21.807 23.213 -42.968 1 41.22 ? CBD 6RC 803 B 1 HETATM 30 C CBC 6RC . . . H 4 21.179 21.965 -42.881 1 41.58 ? CBC 6RC 803 B 1 HETATM 31 C CBI 6RC . . . H 4 21.097 21.104 -43.989 1 41.84 ? CBI 6RC 803 B 1 HETATM 32 C CBH 6RC . . . H 4 20.467 19.868 -43.875 1 41.61 ? CBH 6RC 803 B 1 HETATM 33 C CBG 6RC . . . H 4 19.918 19.488 -42.656 1 41.66 ? CBG 6RC 803 B 1 HETATM 34 C CBJ 6RC . . . H 4 20.001 20.344 -41.555 1 41.94 ? CBJ 6RC 803 B 1 HETATM 35 C CBB 6RC . . . H 4 20.624 21.586 -41.641 1 41.9 ? CBB 6RC 803 B 1 HETATM 36 N NBF 6RC . . . H 4 20.68 22.385 -40.559 1 41.97 ? NBF 6RC 803 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #