data_5K9T # _model_server_result.job_id XR4N2BDC4eyJYaezbRVzJg _model_server_result.datetime_utc '2025-03-24 17:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5K9T # _exptl.entry_id 5K9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.85 _cell.angle_gamma 90 _cell.entry_id 5K9T _cell.length_a 67.065 _cell.length_b 64.45 _cell.length_c 87.967 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1B ADP . A ADP 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 C MG MG . A MG 902 1_555 D O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 C MG MG . A MG 902 1_555 D O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 C MG MG . A MG 902 1_555 D O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc5 C MG MG . A MG 902 1_555 D O HOH . A HOH 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc6 C MG MG . A MG 902 1_555 D O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5K9T _atom_sites.fract_transf_matrix[1][1] 0.014911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 901 901 ADP ADP . C 3 MG A 1 902 903 MG MG . D 4 HOH A 1 1001 81 HOH HOH . D 4 HOH A 2 1002 34 HOH HOH . D 4 HOH A 3 1003 163 HOH HOH . D 4 HOH A 4 1004 83 HOH HOH . D 4 HOH A 5 1005 25 HOH HOH . D 4 HOH A 6 1006 145 HOH HOH . D 4 HOH A 7 1007 15 HOH HOH . D 4 HOH A 8 1008 94 HOH HOH . D 4 HOH A 9 1009 92 HOH HOH . D 4 HOH A 10 1010 151 HOH HOH . D 4 HOH A 11 1011 88 HOH HOH . D 4 HOH A 12 1012 143 HOH HOH . D 4 HOH A 13 1013 84 HOH HOH . D 4 HOH A 14 1014 82 HOH HOH . D 4 HOH A 15 1015 11 HOH HOH . D 4 HOH A 16 1016 120 HOH HOH . D 4 HOH A 17 1017 43 HOH HOH . D 4 HOH A 18 1018 68 HOH HOH . D 4 HOH A 19 1019 30 HOH HOH . D 4 HOH A 20 1020 17 HOH HOH . D 4 HOH A 21 1021 112 HOH HOH . D 4 HOH A 22 1022 36 HOH HOH . D 4 HOH A 23 1023 4 HOH HOH . D 4 HOH A 24 1024 121 HOH HOH . D 4 HOH A 25 1025 46 HOH HOH . D 4 HOH A 26 1026 20 HOH HOH . D 4 HOH A 27 1027 6 HOH HOH . D 4 HOH A 28 1028 103 HOH HOH . D 4 HOH A 29 1029 139 HOH HOH . D 4 HOH A 30 1030 45 HOH HOH . D 4 HOH A 31 1031 16 HOH HOH . D 4 HOH A 32 1032 96 HOH HOH . D 4 HOH A 33 1033 52 HOH HOH . D 4 HOH A 34 1034 87 HOH HOH . D 4 HOH A 35 1035 67 HOH HOH . D 4 HOH A 36 1036 99 HOH HOH . D 4 HOH A 37 1037 60 HOH HOH . D 4 HOH A 38 1038 129 HOH HOH . D 4 HOH A 39 1039 108 HOH HOH . D 4 HOH A 40 1040 93 HOH HOH . D 4 HOH A 41 1041 72 HOH HOH . D 4 HOH A 42 1042 86 HOH HOH . D 4 HOH A 43 1043 125 HOH HOH . D 4 HOH A 44 1044 124 HOH HOH . D 4 HOH A 45 1045 42 HOH HOH . D 4 HOH A 46 1046 162 HOH HOH . D 4 HOH A 47 1047 59 HOH HOH . D 4 HOH A 48 1048 12 HOH HOH . D 4 HOH A 49 1049 39 HOH HOH . D 4 HOH A 50 1050 128 HOH HOH . D 4 HOH A 51 1051 90 HOH HOH . D 4 HOH A 52 1052 5 HOH HOH . D 4 HOH A 53 1053 40 HOH HOH . D 4 HOH A 54 1054 65 HOH HOH . D 4 HOH A 55 1055 62 HOH HOH . D 4 HOH A 56 1056 56 HOH HOH . D 4 HOH A 57 1057 69 HOH HOH . D 4 HOH A 58 1058 64 HOH HOH . D 4 HOH A 59 1059 123 HOH HOH . D 4 HOH A 60 1060 111 HOH HOH . D 4 HOH A 61 1061 76 HOH HOH . D 4 HOH A 62 1062 54 HOH HOH . D 4 HOH A 63 1063 10 HOH HOH . D 4 HOH A 64 1064 24 HOH HOH . D 4 HOH A 65 1065 98 HOH HOH . D 4 HOH A 66 1066 118 HOH HOH . D 4 HOH A 67 1067 71 HOH HOH . D 4 HOH A 68 1068 110 HOH HOH . D 4 HOH A 69 1069 61 HOH HOH . D 4 HOH A 70 1070 109 HOH HOH . D 4 HOH A 71 1071 57 HOH HOH . D 4 HOH A 72 1072 50 HOH HOH . D 4 HOH A 73 1073 44 HOH HOH . D 4 HOH A 74 1074 155 HOH HOH . D 4 HOH A 75 1075 13 HOH HOH . D 4 HOH A 76 1076 119 HOH HOH . D 4 HOH A 77 1077 27 HOH HOH . D 4 HOH A 78 1078 136 HOH HOH . D 4 HOH A 79 1079 23 HOH HOH . D 4 HOH A 80 1080 8 HOH HOH . D 4 HOH A 81 1081 29 HOH HOH . D 4 HOH A 82 1082 100 HOH HOH . D 4 HOH A 83 1083 95 HOH HOH . D 4 HOH A 84 1084 85 HOH HOH . D 4 HOH A 85 1085 126 HOH HOH . D 4 HOH A 86 1086 2 HOH HOH . D 4 HOH A 87 1087 58 HOH HOH . D 4 HOH A 88 1088 38 HOH HOH . D 4 HOH A 89 1089 89 HOH HOH . D 4 HOH A 90 1090 113 HOH HOH . D 4 HOH A 91 1091 97 HOH HOH . D 4 HOH A 92 1092 148 HOH HOH . D 4 HOH A 93 1093 47 HOH HOH . D 4 HOH A 94 1094 22 HOH HOH . D 4 HOH A 95 1095 48 HOH HOH . D 4 HOH A 96 1096 104 HOH HOH . D 4 HOH A 97 1097 114 HOH HOH . D 4 HOH A 98 1098 116 HOH HOH . D 4 HOH A 99 1099 1 HOH HOH . D 4 HOH A 100 1100 107 HOH HOH . D 4 HOH A 101 1101 41 HOH HOH . D 4 HOH A 102 1102 122 HOH HOH . D 4 HOH A 103 1103 73 HOH HOH . D 4 HOH A 104 1104 149 HOH HOH . D 4 HOH A 105 1105 28 HOH HOH . D 4 HOH A 106 1106 101 HOH HOH . D 4 HOH A 107 1107 160 HOH HOH . D 4 HOH A 108 1108 130 HOH HOH . D 4 HOH A 109 1109 164 HOH HOH . D 4 HOH A 110 1110 49 HOH HOH . D 4 HOH A 111 1111 159 HOH HOH . D 4 HOH A 112 1112 135 HOH HOH . D 4 HOH A 113 1113 134 HOH HOH . D 4 HOH A 114 1114 32 HOH HOH . D 4 HOH A 115 1115 137 HOH HOH . D 4 HOH A 116 1116 141 HOH HOH . D 4 HOH A 117 1117 140 HOH HOH . D 4 HOH A 118 1118 165 HOH HOH . D 4 HOH A 119 1119 106 HOH HOH . D 4 HOH A 120 1120 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.421 _atom_site.Cartn_y 12 _atom_site.Cartn_z 12.459 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 102 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #