data_5K9V
#
_model_server_result.job_id            y46kvq5S1U5UGNMse5KodQ 
_model_server_result.datetime_utc      '2024-11-14 23:46:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5k9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
#
_entry.id    5K9V 
#
_exptl.entry_id    5K9V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5K9V 
_cell.length_a            88.526 
_cell.length_b            88.526 
_cell.length_c            72.992 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5K9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5K9V 
_atom_sites.fract_transf_matrix[1][1]    0.011296 
_atom_sites.fract_transf_matrix[1][2]    0.006522 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0137 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 401 1 CL CL . 
C 2 CL A 1 402 2 CL CL . 
D 2 CL A 1 403 3 CL CL . 
E 2 CL A 1 404 4 CL CL . 
F 2 CL A 1 405 5 CL CL . 
G 2 CL A 1 406 6 CL CL . 
H 2 CL A 1 407 7 CL CL . 
I 3 TRS A 1 408 1 TRS TRS . 
J 4 GOL A 1 409 5 GOL GOL . 
K 4 GOL A 1 410 7 GOL GOL . 
L 5 HOH A 1 501 234 HOH HOH . 
L 5 HOH A 2 502 72 HOH HOH . 
L 5 HOH A 3 503 152 HOH HOH . 
L 5 HOH A 4 504 141 HOH HOH . 
L 5 HOH A 5 505 77 HOH HOH . 
L 5 HOH A 6 506 217 HOH HOH . 
L 5 HOH A 7 507 45 HOH HOH . 
L 5 HOH A 8 508 64 HOH HOH . 
L 5 HOH A 9 509 155 HOH HOH . 
L 5 HOH A 10 510 32 HOH HOH . 
L 5 HOH A 11 511 125 HOH HOH . 
L 5 HOH A 12 512 69 HOH HOH . 
L 5 HOH A 13 513 182 HOH HOH . 
L 5 HOH A 14 514 10 HOH HOH . 
L 5 HOH A 15 515 216 HOH HOH . 
L 5 HOH A 16 516 105 HOH HOH . 
L 5 HOH A 17 517 126 HOH HOH . 
L 5 HOH A 18 518 31 HOH HOH . 
L 5 HOH A 19 519 244 HOH HOH . 
L 5 HOH A 20 520 95 HOH HOH . 
L 5 HOH A 21 521 48 HOH HOH . 
L 5 HOH A 22 522 199 HOH HOH . 
L 5 HOH A 23 523 142 HOH HOH . 
L 5 HOH A 24 524 54 HOH HOH . 
L 5 HOH A 25 525 67 HOH HOH . 
L 5 HOH A 26 526 122 HOH HOH . 
L 5 HOH A 27 527 1 HOH HOH . 
L 5 HOH A 28 528 61 HOH HOH . 
L 5 HOH A 29 529 20 HOH HOH . 
L 5 HOH A 30 530 245 HOH HOH . 
L 5 HOH A 31 531 90 HOH HOH . 
L 5 HOH A 32 532 73 HOH HOH . 
L 5 HOH A 33 533 11 HOH HOH . 
L 5 HOH A 34 534 83 HOH HOH . 
L 5 HOH A 35 535 26 HOH HOH . 
L 5 HOH A 36 536 56 HOH HOH . 
L 5 HOH A 37 537 13 HOH HOH . 
L 5 HOH A 38 538 8 HOH HOH . 
L 5 HOH A 39 539 254 HOH HOH . 
L 5 HOH A 40 540 128 HOH HOH . 
L 5 HOH A 41 541 165 HOH HOH . 
L 5 HOH A 42 542 22 HOH HOH . 
L 5 HOH A 43 543 135 HOH HOH . 
L 5 HOH A 44 544 19 HOH HOH . 
L 5 HOH A 45 545 78 HOH HOH . 
L 5 HOH A 46 546 12 HOH HOH . 
L 5 HOH A 47 547 44 HOH HOH . 
L 5 HOH A 48 548 166 HOH HOH . 
L 5 HOH A 49 549 191 HOH HOH . 
L 5 HOH A 50 550 41 HOH HOH . 
L 5 HOH A 51 551 33 HOH HOH . 
L 5 HOH A 52 552 65 HOH HOH . 
L 5 HOH A 53 553 147 HOH HOH . 
L 5 HOH A 54 554 76 HOH HOH . 
L 5 HOH A 55 555 35 HOH HOH . 
L 5 HOH A 56 556 3 HOH HOH . 
L 5 HOH A 57 557 110 HOH HOH . 
L 5 HOH A 58 558 112 HOH HOH . 
L 5 HOH A 59 559 55 HOH HOH . 
L 5 HOH A 60 560 18 HOH HOH . 
L 5 HOH A 61 561 246 HOH HOH . 
L 5 HOH A 62 562 5 HOH HOH . 
L 5 HOH A 63 563 115 HOH HOH . 
L 5 HOH A 64 564 46 HOH HOH . 
L 5 HOH A 65 565 256 HOH HOH . 
L 5 HOH A 66 566 25 HOH HOH . 
L 5 HOH A 67 567 29 HOH HOH . 
L 5 HOH A 68 568 138 HOH HOH . 
L 5 HOH A 69 569 4 HOH HOH . 
L 5 HOH A 70 570 7 HOH HOH . 
L 5 HOH A 71 571 296 HOH HOH . 
L 5 HOH A 72 572 93 HOH HOH . 
L 5 HOH A 73 573 47 HOH HOH . 
L 5 HOH A 74 574 36 HOH HOH . 
L 5 HOH A 75 575 71 HOH HOH . 
L 5 HOH A 76 576 58 HOH HOH . 
L 5 HOH A 77 577 43 HOH HOH . 
L 5 HOH A 78 578 146 HOH HOH . 
L 5 HOH A 79 579 9 HOH HOH . 
L 5 HOH A 80 580 37 HOH HOH . 
L 5 HOH A 81 581 6 HOH HOH . 
L 5 HOH A 82 582 94 HOH HOH . 
L 5 HOH A 83 583 181 HOH HOH . 
L 5 HOH A 84 584 34 HOH HOH . 
L 5 HOH A 85 585 14 HOH HOH . 
L 5 HOH A 86 586 285 HOH HOH . 
L 5 HOH A 87 587 239 HOH HOH . 
L 5 HOH A 88 588 59 HOH HOH . 
L 5 HOH A 89 589 102 HOH HOH . 
L 5 HOH A 90 590 39 HOH HOH . 
L 5 HOH A 91 591 68 HOH HOH . 
L 5 HOH A 92 592 129 HOH HOH . 
L 5 HOH A 93 593 21 HOH HOH . 
L 5 HOH A 94 594 63 HOH HOH . 
L 5 HOH A 95 595 163 HOH HOH . 
L 5 HOH A 96 596 50 HOH HOH . 
L 5 HOH A 97 597 116 HOH HOH . 
L 5 HOH A 98 598 15 HOH HOH . 
L 5 HOH A 99 599 23 HOH HOH . 
L 5 HOH A 100 600 288 HOH HOH . 
L 5 HOH A 101 601 130 HOH HOH . 
L 5 HOH A 102 602 175 HOH HOH . 
L 5 HOH A 103 603 154 HOH HOH . 
L 5 HOH A 104 604 188 HOH HOH . 
L 5 HOH A 105 605 265 HOH HOH . 
L 5 HOH A 106 606 17 HOH HOH . 
L 5 HOH A 107 607 137 HOH HOH . 
L 5 HOH A 108 608 109 HOH HOH . 
L 5 HOH A 109 609 49 HOH HOH . 
L 5 HOH A 110 610 16 HOH HOH . 
L 5 HOH A 111 611 108 HOH HOH . 
L 5 HOH A 112 612 40 HOH HOH . 
L 5 HOH A 113 613 145 HOH HOH . 
L 5 HOH A 114 614 262 HOH HOH . 
L 5 HOH A 115 615 2 HOH HOH . 
L 5 HOH A 116 616 82 HOH HOH . 
L 5 HOH A 117 617 57 HOH HOH . 
L 5 HOH A 118 618 28 HOH HOH . 
L 5 HOH A 119 619 286 HOH HOH . 
L 5 HOH A 120 620 164 HOH HOH . 
L 5 HOH A 121 621 62 HOH HOH . 
L 5 HOH A 122 622 187 HOH HOH . 
L 5 HOH A 123 623 180 HOH HOH . 
L 5 HOH A 124 624 24 HOH HOH . 
L 5 HOH A 125 625 53 HOH HOH . 
L 5 HOH A 126 626 97 HOH HOH . 
L 5 HOH A 127 627 51 HOH HOH . 
L 5 HOH A 128 628 269 HOH HOH . 
L 5 HOH A 129 629 103 HOH HOH . 
L 5 HOH A 130 630 80 HOH HOH . 
L 5 HOH A 131 631 193 HOH HOH . 
L 5 HOH A 132 632 290 HOH HOH . 
L 5 HOH A 133 633 70 HOH HOH . 
L 5 HOH A 134 634 232 HOH HOH . 
L 5 HOH A 135 635 140 HOH HOH . 
L 5 HOH A 136 636 133 HOH HOH . 
L 5 HOH A 137 637 66 HOH HOH . 
L 5 HOH A 138 638 30 HOH HOH . 
L 5 HOH A 139 639 100 HOH HOH . 
L 5 HOH A 140 640 204 HOH HOH . 
L 5 HOH A 141 641 113 HOH HOH . 
L 5 HOH A 142 642 156 HOH HOH . 
L 5 HOH A 143 643 177 HOH HOH . 
L 5 HOH A 144 644 27 HOH HOH . 
L 5 HOH A 145 645 42 HOH HOH . 
L 5 HOH A 146 646 107 HOH HOH . 
L 5 HOH A 147 647 173 HOH HOH . 
L 5 HOH A 148 648 91 HOH HOH . 
L 5 HOH A 149 649 81 HOH HOH . 
L 5 HOH A 150 650 96 HOH HOH . 
L 5 HOH A 151 651 211 HOH HOH . 
L 5 HOH A 152 652 266 HOH HOH . 
L 5 HOH A 153 653 111 HOH HOH . 
L 5 HOH A 154 654 247 HOH HOH . 
L 5 HOH A 155 655 119 HOH HOH . 
L 5 HOH A 156 656 52 HOH HOH . 
L 5 HOH A 157 657 148 HOH HOH . 
L 5 HOH A 158 658 196 HOH HOH . 
L 5 HOH A 159 659 139 HOH HOH . 
L 5 HOH A 160 660 251 HOH HOH . 
L 5 HOH A 161 661 168 HOH HOH . 
L 5 HOH A 162 662 79 HOH HOH . 
L 5 HOH A 163 663 99 HOH HOH . 
L 5 HOH A 164 664 220 HOH HOH . 
L 5 HOH A 165 665 131 HOH HOH . 
L 5 HOH A 166 666 160 HOH HOH . 
L 5 HOH A 167 667 104 HOH HOH . 
L 5 HOH A 168 668 114 HOH HOH . 
L 5 HOH A 169 669 238 HOH HOH . 
L 5 HOH A 170 670 190 HOH HOH . 
L 5 HOH A 171 671 186 HOH HOH . 
L 5 HOH A 172 672 267 HOH HOH . 
L 5 HOH A 173 673 294 HOH HOH . 
L 5 HOH A 174 674 273 HOH HOH . 
L 5 HOH A 175 675 287 HOH HOH . 
L 5 HOH A 176 676 255 HOH HOH . 
L 5 HOH A 177 677 170 HOH HOH . 
L 5 HOH A 178 678 293 HOH HOH . 
L 5 HOH A 179 679 134 HOH HOH . 
L 5 HOH A 180 680 297 HOH HOH . 
L 5 HOH A 181 681 124 HOH HOH . 
L 5 HOH A 182 682 89 HOH HOH . 
L 5 HOH A 183 683 92 HOH HOH . 
L 5 HOH A 184 684 150 HOH HOH . 
L 5 HOH A 185 685 183 HOH HOH . 
L 5 HOH A 186 686 221 HOH HOH . 
L 5 HOH A 187 687 123 HOH HOH . 
L 5 HOH A 188 688 157 HOH HOH . 
L 5 HOH A 189 689 205 HOH HOH . 
L 5 HOH A 190 690 136 HOH HOH . 
L 5 HOH A 191 691 167 HOH HOH . 
L 5 HOH A 192 692 84 HOH HOH . 
L 5 HOH A 193 693 38 HOH HOH . 
L 5 HOH A 194 694 206 HOH HOH . 
L 5 HOH A 195 695 143 HOH HOH . 
L 5 HOH A 196 696 101 HOH HOH . 
L 5 HOH A 197 697 121 HOH HOH . 
L 5 HOH A 198 698 169 HOH HOH . 
L 5 HOH A 199 699 295 HOH HOH . 
L 5 HOH A 200 700 194 HOH HOH . 
L 5 HOH A 201 701 242 HOH HOH . 
L 5 HOH A 202 702 60 HOH HOH . 
L 5 HOH A 203 703 120 HOH HOH . 
L 5 HOH A 204 704 274 HOH HOH . 
L 5 HOH A 205 705 98 HOH HOH . 
L 5 HOH A 206 706 106 HOH HOH . 
L 5 HOH A 207 707 132 HOH HOH . 
L 5 HOH A 208 708 253 HOH HOH . 
L 5 HOH A 209 709 144 HOH HOH . 
L 5 HOH A 210 710 118 HOH HOH . 
L 5 HOH A 211 711 243 HOH HOH . 
L 5 HOH A 212 712 248 HOH HOH . 
L 5 HOH A 213 713 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 -26.804 4.639 -13.154 1 41.35 ? C1 GOL 410 A 1 
HETATM 2 O O1 GOL . . . K 4 -26.892 5.815 -12.38 1 45.55 ? O1 GOL 410 A 1 
HETATM 3 C C2 GOL . . . K 4 -28.147 3.924 -13.171 1 46.9 ? C2 GOL 410 A 1 
HETATM 4 O O2 GOL . . . K 4 -29.134 4.775 -12.641 1 59.05 ? O2 GOL 410 A 1 
HETATM 5 C C3 GOL . . . K 4 -28.49 3.55 -14.609 1 59.16 ? C3 GOL 410 A 1 
HETATM 6 O O3 GOL . . . K 4 -27.435 2.782 -15.15 1 40.72 ? O3 GOL 410 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#