data_5K9W # _model_server_result.job_id tB7OgESIcB-DawMPIzGoJg _model_server_result.datetime_utc '2024-12-02 14:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5k9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5K9W # _exptl.entry_id 5K9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.262 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5K9W _cell.length_a 88.555 _cell.length_b 88.555 _cell.length_c 103.867 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 N2 O5 S' _chem_comp.formula_weight 270.262 _chem_comp.id OTA _chem_comp.mon_nstd_flag . _chem_comp.name '2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 OTA sing 250 n n N1 C6 OTA sing 251 n n N1 H1 OTA sing 252 n n C2 C3 OTA sing 253 n n C2 H21 OTA sing 254 n n C2 H22A OTA sing 255 n n C3 C4 OTA doub 256 n y C3 S13 OTA sing 257 n y C4 C5 OTA sing 258 n n C4 C15 OTA sing 259 n y C5 C6 OTA sing 260 n n C5 H51 OTA sing 261 n n C5 H52 OTA sing 262 n n C6 H61 OTA sing 263 n n C6 H62 OTA sing 264 n n S13 C14 OTA sing 265 n y C14 C15 OTA doub 266 n y C14 N19 OTA sing 267 n n C15 C16 OTA sing 268 n n C16 O17 OTA sing 269 n n C16 O18 OTA doub 270 n n O17 H17 OTA sing 271 n n N19 C20 OTA sing 272 n n N19 H19 OTA sing 273 n n C20 C21 OTA sing 274 n n C20 O24 OTA doub 275 n n C21 O22 OTA sing 276 n n C21 O23 OTA doub 277 n n O22 H22 OTA sing 278 n n # _atom_sites.entry_id 5K9W _atom_sites.fract_transf_matrix[1][1] 0.011292 _atom_sites.fract_transf_matrix[1][2] 0.00652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 3 OTA A 1 402 1 OTA OTA . D 4 CL A 1 403 1 CL CL . E 4 CL A 1 404 2 CL CL . F 4 CL A 1 405 3 CL CL . G 4 CL A 1 406 4 CL CL . H 4 CL A 1 407 5 CL CL . I 5 GOL A 1 408 1 GOL GOL . J 6 HOH A 1 501 136 HOH HOH . J 6 HOH A 2 502 182 HOH HOH . J 6 HOH A 3 503 144 HOH HOH . J 6 HOH A 4 504 181 HOH HOH . J 6 HOH A 5 505 149 HOH HOH . J 6 HOH A 6 506 139 HOH HOH . J 6 HOH A 7 507 161 HOH HOH . J 6 HOH A 8 508 69 HOH HOH . J 6 HOH A 9 509 160 HOH HOH . J 6 HOH A 10 510 108 HOH HOH . J 6 HOH A 11 511 45 HOH HOH . J 6 HOH A 12 512 142 HOH HOH . J 6 HOH A 13 513 11 HOH HOH . J 6 HOH A 14 514 78 HOH HOH . J 6 HOH A 15 515 140 HOH HOH . J 6 HOH A 16 516 122 HOH HOH . J 6 HOH A 17 517 34 HOH HOH . J 6 HOH A 18 518 99 HOH HOH . J 6 HOH A 19 519 143 HOH HOH . J 6 HOH A 20 520 85 HOH HOH . J 6 HOH A 21 521 13 HOH HOH . J 6 HOH A 22 522 18 HOH HOH . J 6 HOH A 23 523 124 HOH HOH . J 6 HOH A 24 524 38 HOH HOH . J 6 HOH A 25 525 112 HOH HOH . J 6 HOH A 26 526 185 HOH HOH . J 6 HOH A 27 527 163 HOH HOH . J 6 HOH A 28 528 60 HOH HOH . J 6 HOH A 29 529 165 HOH HOH . J 6 HOH A 30 530 170 HOH HOH . J 6 HOH A 31 531 159 HOH HOH . J 6 HOH A 32 532 164 HOH HOH . J 6 HOH A 33 533 133 HOH HOH . J 6 HOH A 34 534 61 HOH HOH . J 6 HOH A 35 535 75 HOH HOH . J 6 HOH A 36 536 54 HOH HOH . J 6 HOH A 37 537 7 HOH HOH . J 6 HOH A 38 538 26 HOH HOH . J 6 HOH A 39 539 55 HOH HOH . J 6 HOH A 40 540 51 HOH HOH . J 6 HOH A 41 541 105 HOH HOH . J 6 HOH A 42 542 103 HOH HOH . J 6 HOH A 43 543 42 HOH HOH . J 6 HOH A 44 544 5 HOH HOH . J 6 HOH A 45 545 47 HOH HOH . J 6 HOH A 46 546 179 HOH HOH . J 6 HOH A 47 547 24 HOH HOH . J 6 HOH A 48 548 77 HOH HOH . J 6 HOH A 49 549 151 HOH HOH . J 6 HOH A 50 550 129 HOH HOH . J 6 HOH A 51 551 53 HOH HOH . J 6 HOH A 52 552 183 HOH HOH . J 6 HOH A 53 553 12 HOH HOH . J 6 HOH A 54 554 71 HOH HOH . J 6 HOH A 55 555 119 HOH HOH . J 6 HOH A 56 556 16 HOH HOH . J 6 HOH A 57 557 171 HOH HOH . J 6 HOH A 58 558 56 HOH HOH . J 6 HOH A 59 559 23 HOH HOH . J 6 HOH A 60 560 59 HOH HOH . J 6 HOH A 61 561 101 HOH HOH . J 6 HOH A 62 562 30 HOH HOH . J 6 HOH A 63 563 20 HOH HOH . J 6 HOH A 64 564 162 HOH HOH . J 6 HOH A 65 565 48 HOH HOH . J 6 HOH A 66 566 66 HOH HOH . J 6 HOH A 67 567 29 HOH HOH . J 6 HOH A 68 568 115 HOH HOH . J 6 HOH A 69 569 21 HOH HOH . J 6 HOH A 70 570 10 HOH HOH . J 6 HOH A 71 571 174 HOH HOH . J 6 HOH A 72 572 49 HOH HOH . J 6 HOH A 73 573 76 HOH HOH . J 6 HOH A 74 574 88 HOH HOH . J 6 HOH A 75 575 168 HOH HOH . J 6 HOH A 76 576 118 HOH HOH . J 6 HOH A 77 577 113 HOH HOH . J 6 HOH A 78 578 15 HOH HOH . J 6 HOH A 79 579 58 HOH HOH . J 6 HOH A 80 580 95 HOH HOH . J 6 HOH A 81 581 188 HOH HOH . J 6 HOH A 82 582 145 HOH HOH . J 6 HOH A 83 583 180 HOH HOH . J 6 HOH A 84 584 91 HOH HOH . J 6 HOH A 85 585 64 HOH HOH . J 6 HOH A 86 586 93 HOH HOH . J 6 HOH A 87 587 125 HOH HOH . J 6 HOH A 88 588 22 HOH HOH . J 6 HOH A 89 589 40 HOH HOH . J 6 HOH A 90 590 190 HOH HOH . J 6 HOH A 91 591 131 HOH HOH . J 6 HOH A 92 592 156 HOH HOH . J 6 HOH A 93 593 126 HOH HOH . J 6 HOH A 94 594 25 HOH HOH . J 6 HOH A 95 595 141 HOH HOH . J 6 HOH A 96 596 123 HOH HOH . J 6 HOH A 97 597 70 HOH HOH . J 6 HOH A 98 598 94 HOH HOH . J 6 HOH A 99 599 153 HOH HOH . J 6 HOH A 100 600 177 HOH HOH . J 6 HOH A 101 601 39 HOH HOH . J 6 HOH A 102 602 187 HOH HOH . J 6 HOH A 103 603 63 HOH HOH . J 6 HOH A 104 604 90 HOH HOH . J 6 HOH A 105 605 32 HOH HOH . J 6 HOH A 106 606 146 HOH HOH . J 6 HOH A 107 607 4 HOH HOH . J 6 HOH A 108 608 28 HOH HOH . J 6 HOH A 109 609 43 HOH HOH . J 6 HOH A 110 610 46 HOH HOH . J 6 HOH A 111 611 96 HOH HOH . J 6 HOH A 112 612 36 HOH HOH . J 6 HOH A 113 613 67 HOH HOH . J 6 HOH A 114 614 104 HOH HOH . J 6 HOH A 115 615 73 HOH HOH . J 6 HOH A 116 616 173 HOH HOH . J 6 HOH A 117 617 110 HOH HOH . J 6 HOH A 118 618 184 HOH HOH . J 6 HOH A 119 619 74 HOH HOH . J 6 HOH A 120 620 35 HOH HOH . J 6 HOH A 121 621 175 HOH HOH . J 6 HOH A 122 622 83 HOH HOH . J 6 HOH A 123 623 167 HOH HOH . J 6 HOH A 124 624 117 HOH HOH . J 6 HOH A 125 625 72 HOH HOH . J 6 HOH A 126 626 82 HOH HOH . J 6 HOH A 127 627 107 HOH HOH . J 6 HOH A 128 628 121 HOH HOH . J 6 HOH A 129 629 111 HOH HOH . J 6 HOH A 130 630 158 HOH HOH . J 6 HOH A 131 631 68 HOH HOH . J 6 HOH A 132 632 150 HOH HOH . J 6 HOH A 133 633 19 HOH HOH . J 6 HOH A 134 634 80 HOH HOH . J 6 HOH A 135 635 52 HOH HOH . J 6 HOH A 136 636 172 HOH HOH . J 6 HOH A 137 637 2 HOH HOH . J 6 HOH A 138 638 186 HOH HOH . J 6 HOH A 139 639 132 HOH HOH . J 6 HOH A 140 640 81 HOH HOH . J 6 HOH A 141 641 62 HOH HOH . J 6 HOH A 142 642 176 HOH HOH . J 6 HOH A 143 643 57 HOH HOH . J 6 HOH A 144 644 100 HOH HOH . J 6 HOH A 145 645 154 HOH HOH . J 6 HOH A 146 646 14 HOH HOH . J 6 HOH A 147 647 102 HOH HOH . J 6 HOH A 148 648 9 HOH HOH . J 6 HOH A 149 649 155 HOH HOH . J 6 HOH A 150 650 189 HOH HOH . J 6 HOH A 151 651 3 HOH HOH . J 6 HOH A 152 652 166 HOH HOH . J 6 HOH A 153 653 8 HOH HOH . J 6 HOH A 154 654 92 HOH HOH . J 6 HOH A 155 655 120 HOH HOH . J 6 HOH A 156 656 169 HOH HOH . J 6 HOH A 157 657 50 HOH HOH . J 6 HOH A 158 658 33 HOH HOH . J 6 HOH A 159 659 178 HOH HOH . J 6 HOH A 160 660 128 HOH HOH . J 6 HOH A 161 661 106 HOH HOH . J 6 HOH A 162 662 152 HOH HOH . J 6 HOH A 163 663 147 HOH HOH . J 6 HOH A 164 664 27 HOH HOH . J 6 HOH A 165 665 116 HOH HOH . J 6 HOH A 166 666 31 HOH HOH . J 6 HOH A 167 667 89 HOH HOH . J 6 HOH A 168 668 114 HOH HOH . J 6 HOH A 169 669 157 HOH HOH . J 6 HOH A 170 670 130 HOH HOH . J 6 HOH A 171 671 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OTA . . . C 3 32.067 -34.527 -17.404 1 24.97 ? N1 OTA 402 A 1 HETATM 2 C C2 OTA . . . C 3 32.476 -34.616 -15.999 1 19.97 ? C2 OTA 402 A 1 HETATM 3 C C3 OTA . . . C 3 33.45 -33.549 -15.493 1 25.29 ? C3 OTA 402 A 1 HETATM 4 C C4 OTA . . . C 3 33.761 -32.494 -16.413 1 23.91 ? C4 OTA 402 A 1 HETATM 5 C C5 OTA . . . C 3 33.142 -32.343 -17.768 1 25.55 ? C5 OTA 402 A 1 HETATM 6 C C6 OTA . . . C 3 31.931 -33.168 -17.977 1 22.56 ? C6 OTA 402 A 1 HETATM 7 S S13 OTA . . . C 3 34.28 -33.391 -14.133 1 24.86 ? S13 OTA 402 A 1 HETATM 8 C C14 OTA . . . C 3 35.047 -32.048 -14.425 1 28.12 ? C14 OTA 402 A 1 HETATM 9 C C15 OTA . . . C 3 34.791 -31.558 -15.711 1 23.64 ? C15 OTA 402 A 1 HETATM 10 C C16 OTA . . . C 3 35.386 -30.267 -16.353 1 24.35 ? C16 OTA 402 A 1 HETATM 11 O O17 OTA . . . C 3 36.03 -29.466 -15.646 1 25.57 ? O17 OTA 402 A 1 HETATM 12 O O18 OTA . . . C 3 35.201 -30.015 -17.611 1 23.57 ? O18 OTA 402 A 1 HETATM 13 N N19 OTA . . . C 3 35.957 -31.314 -13.644 1 21.56 ? N19 OTA 402 A 1 HETATM 14 C C20 OTA . . . C 3 36.412 -31.75 -12.41 1 28.01 ? C20 OTA 402 A 1 HETATM 15 C C21 OTA . . . C 3 37.431 -30.82 -11.808 1 20.96 ? C21 OTA 402 A 1 HETATM 16 O O22 OTA . . . C 3 38.394 -31.407 -11.21 1 21.41 ? O22 OTA 402 A 1 HETATM 17 O O23 OTA . . . C 3 37.296 -29.593 -12.013 1 22.02 ? O23 OTA 402 A 1 HETATM 18 O O24 OTA . . . C 3 36.056 -32.796 -11.845 1 22.87 ? O24 OTA 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #