data_5KA1 # _model_server_result.job_id YvJmWCXzMN1c7BQhmZPyWw _model_server_result.datetime_utc '2024-11-22 03:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ka1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":310}' # _entry.id 5KA1 # _exptl.entry_id 5KA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KA1 _cell.length_a 88.021 _cell.length_b 88.021 _cell.length_c 72.972 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5KA1 _atom_sites.fract_transf_matrix[1][1] 0.011361 _atom_sites.fract_transf_matrix[1][2] 0.006559 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OTA A 1 301 301 OTA OTA . C 3 CL A 1 302 2 CL CL . D 3 CL A 1 303 3 CL CL . E 3 CL A 1 304 4 CL CL . F 3 CL A 1 305 5 CL CL . G 4 TRS A 1 306 1 TRS TRS . H 5 DMS A 1 307 1 DMS DMS . I 5 DMS A 1 308 2 DMS DMS . J 6 GOL A 1 309 1 GOL GOL . K 6 GOL A 1 310 3 GOL GOL . L 6 GOL A 1 311 4 GOL GOL . M 6 GOL A 1 312 6 GOL GOL . N 6 GOL A 1 313 7 GOL GOL . O 6 GOL A 1 314 8 GOL GOL . P 7 HOH A 1 401 292 HOH HOH . P 7 HOH A 2 402 129 HOH HOH . P 7 HOH A 3 403 293 HOH HOH . P 7 HOH A 4 404 291 HOH HOH . P 7 HOH A 5 405 128 HOH HOH . P 7 HOH A 6 406 146 HOH HOH . P 7 HOH A 7 407 147 HOH HOH . P 7 HOH A 8 408 64 HOH HOH . P 7 HOH A 9 409 37 HOH HOH . P 7 HOH A 10 410 116 HOH HOH . P 7 HOH A 11 411 198 HOH HOH . P 7 HOH A 12 412 88 HOH HOH . P 7 HOH A 13 413 52 HOH HOH . P 7 HOH A 14 414 57 HOH HOH . P 7 HOH A 15 415 68 HOH HOH . P 7 HOH A 16 416 156 HOH HOH . P 7 HOH A 17 417 169 HOH HOH . P 7 HOH A 18 418 96 HOH HOH . P 7 HOH A 19 419 239 HOH HOH . P 7 HOH A 20 420 296 HOH HOH . P 7 HOH A 21 421 40 HOH HOH . P 7 HOH A 22 422 94 HOH HOH . P 7 HOH A 23 423 83 HOH HOH . P 7 HOH A 24 424 78 HOH HOH . P 7 HOH A 25 425 223 HOH HOH . P 7 HOH A 26 426 149 HOH HOH . P 7 HOH A 27 427 17 HOH HOH . P 7 HOH A 28 428 157 HOH HOH . P 7 HOH A 29 429 131 HOH HOH . P 7 HOH A 30 430 193 HOH HOH . P 7 HOH A 31 431 71 HOH HOH . P 7 HOH A 32 432 47 HOH HOH . P 7 HOH A 33 433 106 HOH HOH . P 7 HOH A 34 434 5 HOH HOH . P 7 HOH A 35 435 10 HOH HOH . P 7 HOH A 36 436 246 HOH HOH . P 7 HOH A 37 437 288 HOH HOH . P 7 HOH A 38 438 141 HOH HOH . P 7 HOH A 39 439 119 HOH HOH . P 7 HOH A 40 440 9 HOH HOH . P 7 HOH A 41 441 43 HOH HOH . P 7 HOH A 42 442 29 HOH HOH . P 7 HOH A 43 443 8 HOH HOH . P 7 HOH A 44 444 15 HOH HOH . P 7 HOH A 45 445 183 HOH HOH . P 7 HOH A 46 446 27 HOH HOH . P 7 HOH A 47 447 19 HOH HOH . P 7 HOH A 48 448 30 HOH HOH . P 7 HOH A 49 449 230 HOH HOH . P 7 HOH A 50 450 124 HOH HOH . P 7 HOH A 51 451 145 HOH HOH . P 7 HOH A 52 452 243 HOH HOH . P 7 HOH A 53 453 55 HOH HOH . P 7 HOH A 54 454 50 HOH HOH . P 7 HOH A 55 455 36 HOH HOH . P 7 HOH A 56 456 165 HOH HOH . P 7 HOH A 57 457 3 HOH HOH . P 7 HOH A 58 458 56 HOH HOH . P 7 HOH A 59 459 160 HOH HOH . P 7 HOH A 60 460 262 HOH HOH . P 7 HOH A 61 461 282 HOH HOH . P 7 HOH A 62 462 38 HOH HOH . P 7 HOH A 63 463 150 HOH HOH . P 7 HOH A 64 464 59 HOH HOH . P 7 HOH A 65 465 79 HOH HOH . P 7 HOH A 66 466 70 HOH HOH . P 7 HOH A 67 467 107 HOH HOH . P 7 HOH A 68 468 76 HOH HOH . P 7 HOH A 69 469 101 HOH HOH . P 7 HOH A 70 470 7 HOH HOH . P 7 HOH A 71 471 14 HOH HOH . P 7 HOH A 72 472 221 HOH HOH . P 7 HOH A 73 473 122 HOH HOH . P 7 HOH A 74 474 61 HOH HOH . P 7 HOH A 75 475 111 HOH HOH . P 7 HOH A 76 476 153 HOH HOH . P 7 HOH A 77 477 35 HOH HOH . P 7 HOH A 78 478 41 HOH HOH . P 7 HOH A 79 479 294 HOH HOH . P 7 HOH A 80 480 100 HOH HOH . P 7 HOH A 81 481 21 HOH HOH . P 7 HOH A 82 482 170 HOH HOH . P 7 HOH A 83 483 212 HOH HOH . P 7 HOH A 84 484 135 HOH HOH . P 7 HOH A 85 485 69 HOH HOH . P 7 HOH A 86 486 62 HOH HOH . P 7 HOH A 87 487 58 HOH HOH . P 7 HOH A 88 488 234 HOH HOH . P 7 HOH A 89 489 133 HOH HOH . P 7 HOH A 90 490 126 HOH HOH . P 7 HOH A 91 491 63 HOH HOH . P 7 HOH A 92 492 26 HOH HOH . P 7 HOH A 93 493 13 HOH HOH . P 7 HOH A 94 494 93 HOH HOH . P 7 HOH A 95 495 231 HOH HOH . P 7 HOH A 96 496 23 HOH HOH . P 7 HOH A 97 497 86 HOH HOH . P 7 HOH A 98 498 16 HOH HOH . P 7 HOH A 99 499 22 HOH HOH . P 7 HOH A 100 500 180 HOH HOH . P 7 HOH A 101 501 11 HOH HOH . P 7 HOH A 102 502 123 HOH HOH . P 7 HOH A 103 503 24 HOH HOH . P 7 HOH A 104 504 74 HOH HOH . P 7 HOH A 105 505 175 HOH HOH . P 7 HOH A 106 506 90 HOH HOH . P 7 HOH A 107 507 20 HOH HOH . P 7 HOH A 108 508 91 HOH HOH . P 7 HOH A 109 509 203 HOH HOH . P 7 HOH A 110 510 32 HOH HOH . P 7 HOH A 111 511 102 HOH HOH . P 7 HOH A 112 512 103 HOH HOH . P 7 HOH A 113 513 95 HOH HOH . P 7 HOH A 114 514 34 HOH HOH . P 7 HOH A 115 515 46 HOH HOH . P 7 HOH A 116 516 33 HOH HOH . P 7 HOH A 117 517 65 HOH HOH . P 7 HOH A 118 518 281 HOH HOH . P 7 HOH A 119 519 143 HOH HOH . P 7 HOH A 120 520 206 HOH HOH . P 7 HOH A 121 521 275 HOH HOH . P 7 HOH A 122 522 75 HOH HOH . P 7 HOH A 123 523 155 HOH HOH . P 7 HOH A 124 524 238 HOH HOH . P 7 HOH A 125 525 161 HOH HOH . P 7 HOH A 126 526 99 HOH HOH . P 7 HOH A 127 527 85 HOH HOH . P 7 HOH A 128 528 82 HOH HOH . P 7 HOH A 129 529 167 HOH HOH . P 7 HOH A 130 530 159 HOH HOH . P 7 HOH A 131 531 87 HOH HOH . P 7 HOH A 132 532 190 HOH HOH . P 7 HOH A 133 533 148 HOH HOH . P 7 HOH A 134 534 184 HOH HOH . P 7 HOH A 135 535 51 HOH HOH . P 7 HOH A 136 536 214 HOH HOH . P 7 HOH A 137 537 117 HOH HOH . P 7 HOH A 138 538 113 HOH HOH . P 7 HOH A 139 539 173 HOH HOH . P 7 HOH A 140 540 187 HOH HOH . P 7 HOH A 141 541 114 HOH HOH . P 7 HOH A 142 542 73 HOH HOH . P 7 HOH A 143 543 67 HOH HOH . P 7 HOH A 144 544 235 HOH HOH . P 7 HOH A 145 545 80 HOH HOH . P 7 HOH A 146 546 140 HOH HOH . P 7 HOH A 147 547 72 HOH HOH . P 7 HOH A 148 548 6 HOH HOH . P 7 HOH A 149 549 48 HOH HOH . P 7 HOH A 150 550 216 HOH HOH . P 7 HOH A 151 551 178 HOH HOH . P 7 HOH A 152 552 186 HOH HOH . P 7 HOH A 153 553 39 HOH HOH . P 7 HOH A 154 554 208 HOH HOH . P 7 HOH A 155 555 44 HOH HOH . P 7 HOH A 156 556 295 HOH HOH . P 7 HOH A 157 557 192 HOH HOH . P 7 HOH A 158 558 108 HOH HOH . P 7 HOH A 159 559 84 HOH HOH . P 7 HOH A 160 560 134 HOH HOH . P 7 HOH A 161 561 194 HOH HOH . P 7 HOH A 162 562 285 HOH HOH . P 7 HOH A 163 563 213 HOH HOH . P 7 HOH A 164 564 163 HOH HOH . P 7 HOH A 165 565 215 HOH HOH . P 7 HOH A 166 566 266 HOH HOH . P 7 HOH A 167 567 289 HOH HOH . P 7 HOH A 168 568 219 HOH HOH . P 7 HOH A 169 569 109 HOH HOH . P 7 HOH A 170 570 256 HOH HOH . P 7 HOH A 171 571 204 HOH HOH . P 7 HOH A 172 572 278 HOH HOH . P 7 HOH A 173 573 142 HOH HOH . P 7 HOH A 174 574 115 HOH HOH . P 7 HOH A 175 575 228 HOH HOH . P 7 HOH A 176 576 290 HOH HOH . P 7 HOH A 177 577 237 HOH HOH . P 7 HOH A 178 578 120 HOH HOH . P 7 HOH A 179 579 217 HOH HOH . P 7 HOH A 180 580 127 HOH HOH . P 7 HOH A 181 581 210 HOH HOH . P 7 HOH A 182 582 136 HOH HOH . P 7 HOH A 183 583 144 HOH HOH . P 7 HOH A 184 584 250 HOH HOH . P 7 HOH A 185 585 97 HOH HOH . P 7 HOH A 186 586 152 HOH HOH . P 7 HOH A 187 587 205 HOH HOH . P 7 HOH A 188 588 154 HOH HOH . P 7 HOH A 189 589 182 HOH HOH . P 7 HOH A 190 590 171 HOH HOH . P 7 HOH A 191 591 284 HOH HOH . P 7 HOH A 192 592 195 HOH HOH . P 7 HOH A 193 593 255 HOH HOH . P 7 HOH A 194 594 125 HOH HOH . P 7 HOH A 195 595 242 HOH HOH . P 7 HOH A 196 596 253 HOH HOH . P 7 HOH A 197 597 274 HOH HOH . P 7 HOH A 198 598 257 HOH HOH . P 7 HOH A 199 599 168 HOH HOH . P 7 HOH A 200 600 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 -9.685 106.453 2.814 1 34.03 ? C1 GOL 310 A 1 HETATM 2 O O1 GOL . . . K 6 -9.265 106.497 1.462 1 35.03 ? O1 GOL 310 A 1 HETATM 3 C C2 GOL . . . K 6 -8.961 105.305 3.507 1 40.4 ? C2 GOL 310 A 1 HETATM 4 O O2 GOL . . . K 6 -9.289 104.085 2.875 1 43.64 ? O2 GOL 310 A 1 HETATM 5 C C3 GOL . . . K 6 -9.369 105.253 4.971 1 51.69 ? C3 GOL 310 A 1 HETATM 6 O O3 GOL . . . K 6 -8.869 104.071 5.559 1 50.87 ? O3 GOL 310 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #