data_5KA3 # _model_server_result.job_id CFO32TwquWCq-txburKFRw _model_server_result.datetime_utc '2024-12-01 13:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ka3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5KA3 # _exptl.entry_id 5KA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KA3 _cell.length_a 88.571 _cell.length_b 88.571 _cell.length_c 104.154 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KA3 _atom_sites.fract_transf_matrix[1][1] 0.01129 _atom_sites.fract_transf_matrix[1][2] 0.006519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OTA A 1 401 301 OTA OTA . C 3 TRS A 1 402 1 TRS TRS . D 3 TRS A 1 403 2 TRS TRS . E 4 CL A 1 404 1 CL CL . F 4 CL A 1 405 2 CL CL . G 4 CL A 1 406 3 CL CL . H 4 CL A 1 407 4 CL CL . I 5 GOL A 1 408 1 GOL GOL . J 6 HOH A 1 501 110 HOH HOH . J 6 HOH A 2 502 60 HOH HOH . J 6 HOH A 3 503 5 HOH HOH . J 6 HOH A 4 504 58 HOH HOH . J 6 HOH A 5 505 29 HOH HOH . J 6 HOH A 6 506 53 HOH HOH . J 6 HOH A 7 507 32 HOH HOH . J 6 HOH A 8 508 122 HOH HOH . J 6 HOH A 9 509 85 HOH HOH . J 6 HOH A 10 510 187 HOH HOH . J 6 HOH A 11 511 49 HOH HOH . J 6 HOH A 12 512 25 HOH HOH . J 6 HOH A 13 513 36 HOH HOH . J 6 HOH A 14 514 17 HOH HOH . J 6 HOH A 15 515 24 HOH HOH . J 6 HOH A 16 516 45 HOH HOH . J 6 HOH A 17 517 26 HOH HOH . J 6 HOH A 18 518 33 HOH HOH . J 6 HOH A 19 519 12 HOH HOH . J 6 HOH A 20 520 42 HOH HOH . J 6 HOH A 21 521 97 HOH HOH . J 6 HOH A 22 522 3 HOH HOH . J 6 HOH A 23 523 47 HOH HOH . J 6 HOH A 24 524 22 HOH HOH . J 6 HOH A 25 525 6 HOH HOH . J 6 HOH A 26 526 81 HOH HOH . J 6 HOH A 27 527 30 HOH HOH . J 6 HOH A 28 528 14 HOH HOH . J 6 HOH A 29 529 13 HOH HOH . J 6 HOH A 30 530 39 HOH HOH . J 6 HOH A 31 531 21 HOH HOH . J 6 HOH A 32 532 159 HOH HOH . J 6 HOH A 33 533 66 HOH HOH . J 6 HOH A 34 534 28 HOH HOH . J 6 HOH A 35 535 48 HOH HOH . J 6 HOH A 36 536 100 HOH HOH . J 6 HOH A 37 537 38 HOH HOH . J 6 HOH A 38 538 9 HOH HOH . J 6 HOH A 39 539 102 HOH HOH . J 6 HOH A 40 540 31 HOH HOH . J 6 HOH A 41 541 4 HOH HOH . J 6 HOH A 42 542 106 HOH HOH . J 6 HOH A 43 543 59 HOH HOH . J 6 HOH A 44 544 10 HOH HOH . J 6 HOH A 45 545 18 HOH HOH . J 6 HOH A 46 546 109 HOH HOH . J 6 HOH A 47 547 51 HOH HOH . J 6 HOH A 48 548 19 HOH HOH . J 6 HOH A 49 549 72 HOH HOH . J 6 HOH A 50 550 46 HOH HOH . J 6 HOH A 51 551 37 HOH HOH . J 6 HOH A 52 552 43 HOH HOH . J 6 HOH A 53 553 105 HOH HOH . J 6 HOH A 54 554 68 HOH HOH . J 6 HOH A 55 555 16 HOH HOH . J 6 HOH A 56 556 74 HOH HOH . J 6 HOH A 57 557 61 HOH HOH . J 6 HOH A 58 558 95 HOH HOH . J 6 HOH A 59 559 27 HOH HOH . J 6 HOH A 60 560 8 HOH HOH . J 6 HOH A 61 561 15 HOH HOH . J 6 HOH A 62 562 62 HOH HOH . J 6 HOH A 63 563 63 HOH HOH . J 6 HOH A 64 564 7 HOH HOH . J 6 HOH A 65 565 23 HOH HOH . J 6 HOH A 66 566 154 HOH HOH . J 6 HOH A 67 567 70 HOH HOH . J 6 HOH A 68 568 193 HOH HOH . J 6 HOH A 69 569 55 HOH HOH . J 6 HOH A 70 570 40 HOH HOH . J 6 HOH A 71 571 64 HOH HOH . J 6 HOH A 72 572 165 HOH HOH . J 6 HOH A 73 573 84 HOH HOH . J 6 HOH A 74 574 142 HOH HOH . J 6 HOH A 75 575 35 HOH HOH . J 6 HOH A 76 576 128 HOH HOH . J 6 HOH A 77 577 20 HOH HOH . J 6 HOH A 78 578 198 HOH HOH . J 6 HOH A 79 579 141 HOH HOH . J 6 HOH A 80 580 93 HOH HOH . J 6 HOH A 81 581 52 HOH HOH . J 6 HOH A 82 582 118 HOH HOH . J 6 HOH A 83 583 158 HOH HOH . J 6 HOH A 84 584 41 HOH HOH . J 6 HOH A 85 585 80 HOH HOH . J 6 HOH A 86 586 82 HOH HOH . J 6 HOH A 87 587 130 HOH HOH . J 6 HOH A 88 588 71 HOH HOH . J 6 HOH A 89 589 83 HOH HOH . J 6 HOH A 90 590 65 HOH HOH . J 6 HOH A 91 591 79 HOH HOH . J 6 HOH A 92 592 44 HOH HOH . J 6 HOH A 93 593 34 HOH HOH . J 6 HOH A 94 594 67 HOH HOH . J 6 HOH A 95 595 202 HOH HOH . J 6 HOH A 96 596 203 HOH HOH . J 6 HOH A 97 597 69 HOH HOH . J 6 HOH A 98 598 160 HOH HOH . J 6 HOH A 99 599 143 HOH HOH . J 6 HOH A 100 600 92 HOH HOH . J 6 HOH A 101 601 117 HOH HOH . J 6 HOH A 102 602 180 HOH HOH . J 6 HOH A 103 603 139 HOH HOH . J 6 HOH A 104 604 204 HOH HOH . J 6 HOH A 105 605 88 HOH HOH . J 6 HOH A 106 606 120 HOH HOH . J 6 HOH A 107 607 207 HOH HOH . J 6 HOH A 108 608 153 HOH HOH . J 6 HOH A 109 609 195 HOH HOH . J 6 HOH A 110 610 206 HOH HOH . J 6 HOH A 111 611 166 HOH HOH . J 6 HOH A 112 612 75 HOH HOH . J 6 HOH A 113 613 91 HOH HOH . J 6 HOH A 114 614 201 HOH HOH . J 6 HOH A 115 615 147 HOH HOH . J 6 HOH A 116 616 112 HOH HOH . J 6 HOH A 117 617 137 HOH HOH . J 6 HOH A 118 618 89 HOH HOH . J 6 HOH A 119 619 50 HOH HOH . J 6 HOH A 120 620 152 HOH HOH . J 6 HOH A 121 621 56 HOH HOH . J 6 HOH A 122 622 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -62.931 18.534 4.778 1 54.47 ? C1 GOL 408 A 1 HETATM 2 O O1 GOL . . . I 5 -61.827 19.391 4.583 1 48.38 ? O1 GOL 408 A 1 HETATM 3 C C2 GOL . . . I 5 -63.032 18.161 6.253 1 46.88 ? C2 GOL 408 A 1 HETATM 4 O O2 GOL . . . I 5 -62.389 19.142 7.037 1 54.69 ? O2 GOL 408 A 1 HETATM 5 C C3 GOL . . . I 5 -64.499 18.072 6.655 1 62.54 ? C3 GOL 408 A 1 HETATM 6 O O3 GOL . . . I 5 -64.609 18.171 8.057 1 61.57 ? O3 GOL 408 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #