data_5KAE
#
_model_server_result.job_id            4Lz01uO-RsfNyMP0AasZwQ 
_model_server_result.datetime_utc      '2024-12-21 18:35:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kae 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    5KAE 
#
_exptl.entry_id    5KAE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              496.539 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-azanyl-6-[[(1~{S})-1-(6-fluoranyl-3-phenyl-4-piperazin-1-ylcarbonyl-quinolin-2-yl)ethyl]amino]pyrimidine-5-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.05 
_cell.angle_gamma         90 
_cell.entry_id            5KAE 
_cell.length_a            143.578 
_cell.length_b            67.661 
_cell.length_c            106.197 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KAE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H25 F N8 O' 
_chem_comp.formula_weight    496.539 
_chem_comp.id                6RF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-azanyl-6-[[(1~{S})-1-(6-fluoranyl-3-phenyl-4-piperazin-1-ylcarbonyl-quinolin-2-yl)ethyl]amino]pyrimidine-5-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C4 6RF sing 1 n n 
C4 C5 6RF doub 2 n y 
C4 C3 6RF sing 3 n y 
C5 C6 6RF sing 4 n y 
C3 C2 6RF doub 5 n y 
C6 C1 6RF doub 6 n y 
C2 C1 6RF sing 7 n y 
C2 C9 6RF sing 8 n y 
C23 N6 6RF sing 9 n n 
C23 C24 6RF sing 10 n n 
O1 C13 6RF doub 11 n n 
C1 N1 6RF sing 12 n y 
N6 C13 6RF sing 13 n n 
N6 C26 6RF sing 14 n n 
C13 C9 6RF sing 15 n n 
C26 C25 6RF sing 16 n n 
C9 C8 6RF doub 17 n y 
C24 N7 6RF sing 18 n n 
N7 C25 6RF sing 19 n n 
N1 C7 6RF doub 20 n y 
C8 C7 6RF sing 21 n y 
C8 C12 6RF sing 22 n n 
C7 C10 6RF sing 23 n n 
C12 C14 6RF doub 24 n y 
C12 C18 6RF sing 25 n y 
C14 C15 6RF sing 26 n y 
C18 C17 6RF doub 27 n y 
C10 C11 6RF sing 28 n n 
C10 N2 6RF sing 29 n n 
C15 C16 6RF doub 30 n y 
N2 C19 6RF sing 31 n n 
C19 N4 6RF doub 32 n y 
C19 C20 6RF sing 33 n y 
C17 C16 6RF sing 34 n y 
N4 C22 6RF sing 35 n y 
N8 C27 6RF trip 36 n n 
C27 C20 6RF sing 37 n n 
C20 C21 6RF doub 38 n y 
C22 N3 6RF doub 39 n y 
C21 N3 6RF sing 40 n y 
C21 N5 6RF sing 41 n n 
C23 H1 6RF sing 42 n n 
C23 H2 6RF sing 43 n n 
C24 H3 6RF sing 44 n n 
C24 H4 6RF sing 45 n n 
N7 H5 6RF sing 46 n n 
C25 H7 6RF sing 47 n n 
C25 H8 6RF sing 48 n n 
C26 H9 6RF sing 49 n n 
C26 H10 6RF sing 50 n n 
C14 H11 6RF sing 51 n n 
C15 H12 6RF sing 52 n n 
C16 H13 6RF sing 53 n n 
C17 H14 6RF sing 54 n n 
C18 H15 6RF sing 55 n n 
C3 H16 6RF sing 56 n n 
C5 H17 6RF sing 57 n n 
C6 H18 6RF sing 58 n n 
C10 H19 6RF sing 59 n n 
C11 H20 6RF sing 60 n n 
C11 H21 6RF sing 61 n n 
C11 H22 6RF sing 62 n n 
N2 H23 6RF sing 63 n n 
C22 H24 6RF sing 64 n n 
N5 H25 6RF sing 65 n n 
N5 H26 6RF sing 66 n n 
#
_atom_sites.entry_id                     5KAE 
_atom_sites.fract_transf_matrix[1][1]    0.006965 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000616 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1201 1 SO4 SO4 . 
C 2 SO4 A 1 1202 2 SO4 SO4 . 
D 2 SO4 A 1 1203 3 SO4 SO4 . 
E 3 6RF A 1 1204 1 6RF UNL . 
F 4 HOH A 1 1301 29 HOH HOH . 
F 4 HOH A 2 1302 41 HOH HOH . 
F 4 HOH A 3 1303 50 HOH HOH . 
F 4 HOH A 4 1304 12 HOH HOH . 
F 4 HOH A 5 1305 40 HOH HOH . 
F 4 HOH A 6 1306 49 HOH HOH . 
F 4 HOH A 7 1307 31 HOH HOH . 
F 4 HOH A 8 1308 51 HOH HOH . 
F 4 HOH A 9 1309 21 HOH HOH . 
F 4 HOH A 10 1310 23 HOH HOH . 
F 4 HOH A 11 1311 43 HOH HOH . 
F 4 HOH A 12 1312 11 HOH HOH . 
F 4 HOH A 13 1313 15 HOH HOH . 
F 4 HOH A 14 1314 47 HOH HOH . 
F 4 HOH A 15 1315 5 HOH HOH . 
F 4 HOH A 16 1316 17 HOH HOH . 
F 4 HOH A 17 1317 7 HOH HOH . 
F 4 HOH A 18 1318 9 HOH HOH . 
F 4 HOH A 19 1319 6 HOH HOH . 
F 4 HOH A 20 1320 22 HOH HOH . 
F 4 HOH A 21 1321 18 HOH HOH . 
F 4 HOH A 22 1322 37 HOH HOH . 
F 4 HOH A 23 1323 13 HOH HOH . 
F 4 HOH A 24 1324 53 HOH HOH . 
F 4 HOH A 25 1325 28 HOH HOH . 
F 4 HOH A 26 1326 35 HOH HOH . 
F 4 HOH A 27 1327 14 HOH HOH . 
F 4 HOH A 28 1328 30 HOH HOH . 
F 4 HOH A 29 1329 10 HOH HOH . 
F 4 HOH A 30 1330 54 HOH HOH . 
F 4 HOH A 31 1331 19 HOH HOH . 
F 4 HOH A 32 1332 1 HOH HOH . 
F 4 HOH A 33 1333 36 HOH HOH . 
F 4 HOH A 34 1334 38 HOH HOH . 
F 4 HOH A 35 1335 27 HOH HOH . 
F 4 HOH A 36 1336 39 HOH HOH . 
F 4 HOH A 37 1337 45 HOH HOH . 
F 4 HOH A 38 1338 48 HOH HOH . 
F 4 HOH A 39 1339 8 HOH HOH . 
F 4 HOH A 40 1340 20 HOH HOH . 
F 4 HOH A 41 1341 52 HOH HOH . 
F 4 HOH A 42 1342 25 HOH HOH . 
F 4 HOH A 43 1343 16 HOH HOH . 
F 4 HOH A 44 1344 46 HOH HOH . 
F 4 HOH A 45 1345 26 HOH HOH . 
F 4 HOH A 46 1346 4 HOH HOH . 
F 4 HOH A 47 1347 2 HOH HOH . 
F 4 HOH A 48 1348 33 HOH HOH . 
F 4 HOH A 49 1349 34 HOH HOH . 
F 4 HOH A 50 1350 24 HOH HOH . 
F 4 HOH A 51 1351 32 HOH HOH . 
F 4 HOH A 52 1352 3 HOH HOH . 
F 4 HOH A 53 1353 44 HOH HOH . 
F 4 HOH A 54 1354 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 6RF . . . E 3 15.618 19.817 17.885 1 70.59 ? C23 6RF 1204 A 1 
HETATM 2 C C24 6RF . . . E 3 14.66 19.974 19.065 1 68.98 ? C24 6RF 1204 A 1 
HETATM 3 N N7 6RF . . . E 3 13.921 18.709 19.263 1 73 ? N7 6RF 1204 A 1 
HETATM 4 C C25 6RF . . . E 3 14.848 17.644 19.686 1 69.59 ? C25 6RF 1204 A 1 
HETATM 5 C C26 6RF . . . E 3 15.854 17.397 18.551 1 69.72 ? C26 6RF 1204 A 1 
HETATM 6 N N6 6RF . . . E 3 16.484 18.672 18.199 1 68.51 ? N6 6RF 1204 A 1 
HETATM 7 C C13 6RF . . . E 3 17.79 18.852 18.236 1 67.61 ? C13 6RF 1204 A 1 
HETATM 8 O O1 6RF . . . E 3 18.223 19.975 17.969 1 72.22 ? O1 6RF 1204 A 1 
HETATM 9 C C9 6RF . . . E 3 18.792 17.751 18.606 1 65.65 ? C9 6RF 1204 A 1 
HETATM 10 C C8 6RF . . . E 3 19.31 17.749 19.891 1 62.22 ? C8 6RF 1204 A 1 
HETATM 11 C C12 6RF . . . E 3 18.821 18.665 20.811 1 57.13 ? C12 6RF 1204 A 1 
HETATM 12 C C14 6RF . . . E 3 19.3 19.956 20.963 1 57.34 ? C14 6RF 1204 A 1 
HETATM 13 C C15 6RF . . . E 3 18.727 20.785 21.931 1 55.33 ? C15 6RF 1204 A 1 
HETATM 14 C C16 6RF . . . E 3 17.685 20.324 22.736 1 53.1 ? C16 6RF 1204 A 1 
HETATM 15 C C17 6RF . . . E 3 17.209 19.026 22.581 1 54.48 ? C17 6RF 1204 A 1 
HETATM 16 C C18 6RF . . . E 3 17.771 18.207 21.612 1 56.47 ? C18 6RF 1204 A 1 
HETATM 17 C C2 6RF . . . E 3 19.256 16.8 17.703 1 61.42 ? C2 6RF 1204 A 1 
HETATM 18 C C3 6RF . . . E 3 18.8 16.758 16.389 1 58.72 ? C3 6RF 1204 A 1 
HETATM 19 C C4 6RF . . . E 3 19.261 15.79 15.515 1 59.97 ? C4 6RF 1204 A 1 
HETATM 20 F F1 6RF . . . E 3 18.824 15.755 14.243 1 64.48 ? F1 6RF 1204 A 1 
HETATM 21 C C5 6RF . . . E 3 20.197 14.854 15.952 1 66.19 ? C5 6RF 1204 A 1 
HETATM 22 C C6 6RF . . . E 3 20.664 14.893 17.26 1 60.66 ? C6 6RF 1204 A 1 
HETATM 23 C C1 6RF . . . E 3 20.191 15.862 18.135 1 58.84 ? C1 6RF 1204 A 1 
HETATM 24 N N1 6RF . . . E 3 20.651 15.868 19.387 1 59.14 ? N1 6RF 1204 A 1 
HETATM 25 C C7 6RF . . . E 3 20.226 16.765 20.278 1 58.55 ? C7 6RF 1204 A 1 
HETATM 26 C C10 6RF . . . E 3 20.799 16.743 21.705 1 51.08 ? C10 6RF 1204 A 1 
HETATM 27 C C11 6RF . . . E 3 21.841 17.862 21.721 1 42.18 ? C11 6RF 1204 A 1 
HETATM 28 N N2 6RF . . . E 3 21.451 15.454 22.036 1 45.23 ? N2 6RF 1204 A 1 
HETATM 29 C C19 6RF . . . E 3 20.814 14.416 22.567 1 40.07 ? C19 6RF 1204 A 1 
HETATM 30 N N4 6RF . . . E 3 19.492 14.465 22.716 1 44.23 ? N4 6RF 1204 A 1 
HETATM 31 C C22 6RF . . . E 3 18.808 13.443 23.239 1 47.64 ? C22 6RF 1204 A 1 
HETATM 32 N N3 6RF . . . E 3 19.397 12.326 23.647 1 45.54 ? N3 6RF 1204 A 1 
HETATM 33 C C21 6RF . . . E 3 20.724 12.208 23.52 1 42.89 ? C21 6RF 1204 A 1 
HETATM 34 N N5 6RF . . . E 3 21.303 11.09 23.912 1 45.29 ? N5 6RF 1204 A 1 
HETATM 35 C C20 6RF . . . E 3 21.474 13.254 22.977 1 42.88 ? C20 6RF 1204 A 1 
HETATM 36 C C27 6RF . . . E 3 22.891 13.114 22.847 1 43.62 ? C27 6RF 1204 A 1 
HETATM 37 N N8 6RF . . . E 3 24.017 12.978 22.754 1 44.66 ? N8 6RF 1204 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#