data_5KAL # _model_server_result.job_id dfVV3FMLWRX-dqWqhSgogQ _model_server_result.datetime_utc '2025-06-19 13:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 5KAL # _exptl.entry_id 5KAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.05 _cell.angle_gamma 90 _cell.entry_id 5KAL _cell.length_a 82.688 _cell.length_b 42.876 _cell.length_c 109.618 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L,N 1 1 B,D,G,H,I,K,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 86 A ASP 66 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A OD2 ASP 88 A ASP 68 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 E O1A UTP . A UTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc4 E O1B UTP . A UTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 E O3G UTP . A UTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 E O1A UTP . A UTP 501 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 F MG MG . A MG 502 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 F MG MG . A MG 502 1_555 L O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 L O HOH . A HOH 602 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 L O HOH . A HOH 610 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 L O HOH . A HOH 613 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc12 L O HOH . A HOH 649 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc13 B OD1 ASP 86 B ASP 66 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc14 B OD2 ASP 86 B ASP 66 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc15 B OD2 ASP 88 B ASP 68 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc16 B OD1 ASP 156 B ASP 136 1_555 I MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc17 G O1A UTP . B UTP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc18 G O1B UTP . B UTP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc19 G O3G UTP . B UTP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc20 G O1A UTP . B UTP 401 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc21 H MG MG . B MG 402 1_555 M O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc22 H MG MG . B MG 402 1_555 M O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc23 M O HOH . B HOH 505 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc24 M O HOH . B HOH 506 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc25 M O HOH . B HOH 507 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc26 M O HOH . B HOH 527 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc27 C O3' U 2 Y U 2 1_555 J MG MG . Y MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc28 J MG MG . Y MG 101 1_555 N O HOH . Y HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc29 D O3' U 2 Z U 2 1_555 K MG MG . Z MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc30 K MG MG . Z MG 101 1_555 O O HOH . Z HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KAL _atom_sites.fract_transf_matrix[1][1] 0.012094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000856 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 UTP A 1 501 501 UTP UTP . F 4 MG A 1 502 401 MG MG . G 3 UTP B 1 401 502 UTP UTP . H 4 MG B 1 402 403 MG MG . I 4 MG B 1 403 405 MG MG . J 4 MG Y 1 101 402 MG MG . K 4 MG Z 1 101 404 MG MG . L 5 HOH A 1 601 56 HOH HOH . L 5 HOH A 2 602 83 HOH HOH . L 5 HOH A 3 603 61 HOH HOH . L 5 HOH A 4 604 57 HOH HOH . L 5 HOH A 5 605 233 HOH HOH . L 5 HOH A 6 606 24 HOH HOH . L 5 HOH A 7 607 59 HOH HOH . L 5 HOH A 8 608 144 HOH HOH . L 5 HOH A 9 609 130 HOH HOH . L 5 HOH A 10 610 44 HOH HOH . L 5 HOH A 11 611 129 HOH HOH . L 5 HOH A 12 612 183 HOH HOH . L 5 HOH A 13 613 177 HOH HOH . L 5 HOH A 14 614 235 HOH HOH . L 5 HOH A 15 615 7 HOH HOH . L 5 HOH A 16 616 79 HOH HOH . L 5 HOH A 17 617 69 HOH HOH . L 5 HOH A 18 618 19 HOH HOH . L 5 HOH A 19 619 181 HOH HOH . L 5 HOH A 20 620 8 HOH HOH . L 5 HOH A 21 621 10 HOH HOH . L 5 HOH A 22 622 4 HOH HOH . L 5 HOH A 23 623 38 HOH HOH . L 5 HOH A 24 624 65 HOH HOH . L 5 HOH A 25 625 37 HOH HOH . L 5 HOH A 26 626 127 HOH HOH . L 5 HOH A 27 627 82 HOH HOH . L 5 HOH A 28 628 139 HOH HOH . L 5 HOH A 29 629 180 HOH HOH . L 5 HOH A 30 630 131 HOH HOH . L 5 HOH A 31 631 155 HOH HOH . L 5 HOH A 32 632 97 HOH HOH . L 5 HOH A 33 633 119 HOH HOH . L 5 HOH A 34 634 194 HOH HOH . L 5 HOH A 35 635 58 HOH HOH . L 5 HOH A 36 636 2 HOH HOH . L 5 HOH A 37 637 72 HOH HOH . L 5 HOH A 38 638 85 HOH HOH . L 5 HOH A 39 639 55 HOH HOH . L 5 HOH A 40 640 143 HOH HOH . L 5 HOH A 41 641 25 HOH HOH . L 5 HOH A 42 642 70 HOH HOH . L 5 HOH A 43 643 138 HOH HOH . L 5 HOH A 44 644 48 HOH HOH . L 5 HOH A 45 645 174 HOH HOH . L 5 HOH A 46 646 22 HOH HOH . L 5 HOH A 47 647 11 HOH HOH . L 5 HOH A 48 648 111 HOH HOH . L 5 HOH A 49 649 84 HOH HOH . L 5 HOH A 50 650 187 HOH HOH . L 5 HOH A 51 651 80 HOH HOH . L 5 HOH A 52 652 6 HOH HOH . L 5 HOH A 53 653 39 HOH HOH . L 5 HOH A 54 654 75 HOH HOH . L 5 HOH A 55 655 15 HOH HOH . L 5 HOH A 56 656 46 HOH HOH . L 5 HOH A 57 657 104 HOH HOH . L 5 HOH A 58 658 164 HOH HOH . L 5 HOH A 59 659 16 HOH HOH . L 5 HOH A 60 660 103 HOH HOH . L 5 HOH A 61 661 41 HOH HOH . L 5 HOH A 62 662 42 HOH HOH . L 5 HOH A 63 663 28 HOH HOH . L 5 HOH A 64 664 54 HOH HOH . L 5 HOH A 65 665 40 HOH HOH . L 5 HOH A 66 666 76 HOH HOH . L 5 HOH A 67 667 213 HOH HOH . L 5 HOH A 68 668 148 HOH HOH . L 5 HOH A 69 669 115 HOH HOH . L 5 HOH A 70 670 124 HOH HOH . L 5 HOH A 71 671 165 HOH HOH . L 5 HOH A 72 672 17 HOH HOH . L 5 HOH A 73 673 35 HOH HOH . L 5 HOH A 74 674 73 HOH HOH . L 5 HOH A 75 675 117 HOH HOH . L 5 HOH A 76 676 141 HOH HOH . L 5 HOH A 77 677 77 HOH HOH . L 5 HOH A 78 678 93 HOH HOH . L 5 HOH A 79 679 122 HOH HOH . L 5 HOH A 80 680 45 HOH HOH . L 5 HOH A 81 681 29 HOH HOH . L 5 HOH A 82 682 31 HOH HOH . L 5 HOH A 83 683 99 HOH HOH . L 5 HOH A 84 684 64 HOH HOH . L 5 HOH A 85 685 197 HOH HOH . L 5 HOH A 86 686 53 HOH HOH . L 5 HOH A 87 687 63 HOH HOH . L 5 HOH A 88 688 107 HOH HOH . L 5 HOH A 89 689 145 HOH HOH . L 5 HOH A 90 690 216 HOH HOH . L 5 HOH A 91 691 34 HOH HOH . L 5 HOH A 92 692 23 HOH HOH . L 5 HOH A 93 693 227 HOH HOH . L 5 HOH A 94 694 102 HOH HOH . L 5 HOH A 95 695 26 HOH HOH . L 5 HOH A 96 696 116 HOH HOH . L 5 HOH A 97 697 95 HOH HOH . L 5 HOH A 98 698 135 HOH HOH . L 5 HOH A 99 699 120 HOH HOH . L 5 HOH A 100 700 147 HOH HOH . L 5 HOH A 101 701 171 HOH HOH . L 5 HOH A 102 702 132 HOH HOH . L 5 HOH A 103 703 154 HOH HOH . L 5 HOH A 104 704 33 HOH HOH . L 5 HOH A 105 705 81 HOH HOH . L 5 HOH A 106 706 150 HOH HOH . L 5 HOH A 107 707 89 HOH HOH . L 5 HOH A 108 708 21 HOH HOH . L 5 HOH A 109 709 30 HOH HOH . L 5 HOH A 110 710 100 HOH HOH . L 5 HOH A 111 711 113 HOH HOH . L 5 HOH A 112 712 195 HOH HOH . L 5 HOH A 113 713 137 HOH HOH . L 5 HOH A 114 714 172 HOH HOH . L 5 HOH A 115 715 152 HOH HOH . L 5 HOH A 116 716 230 HOH HOH . L 5 HOH A 117 717 159 HOH HOH . L 5 HOH A 118 718 151 HOH HOH . L 5 HOH A 119 719 158 HOH HOH . L 5 HOH A 120 720 167 HOH HOH . L 5 HOH A 121 721 189 HOH HOH . L 5 HOH A 122 722 184 HOH HOH . L 5 HOH A 123 723 201 HOH HOH . M 5 HOH B 1 501 191 HOH HOH . M 5 HOH B 2 502 182 HOH HOH . M 5 HOH B 3 503 13 HOH HOH . M 5 HOH B 4 504 157 HOH HOH . M 5 HOH B 5 505 91 HOH HOH . M 5 HOH B 6 506 178 HOH HOH . M 5 HOH B 7 507 90 HOH HOH . M 5 HOH B 8 508 74 HOH HOH . M 5 HOH B 9 509 27 HOH HOH . M 5 HOH B 10 510 128 HOH HOH . M 5 HOH B 11 511 62 HOH HOH . M 5 HOH B 12 512 121 HOH HOH . M 5 HOH B 13 513 170 HOH HOH . M 5 HOH B 14 514 50 HOH HOH . M 5 HOH B 15 515 168 HOH HOH . M 5 HOH B 16 516 118 HOH HOH . M 5 HOH B 17 517 211 HOH HOH . M 5 HOH B 18 518 68 HOH HOH . M 5 HOH B 19 519 32 HOH HOH . M 5 HOH B 20 520 52 HOH HOH . M 5 HOH B 21 521 12 HOH HOH . M 5 HOH B 22 522 109 HOH HOH . M 5 HOH B 23 523 162 HOH HOH . M 5 HOH B 24 524 18 HOH HOH . M 5 HOH B 25 525 106 HOH HOH . M 5 HOH B 26 526 234 HOH HOH . M 5 HOH B 27 527 169 HOH HOH . M 5 HOH B 28 528 43 HOH HOH . M 5 HOH B 29 529 71 HOH HOH . M 5 HOH B 30 530 3 HOH HOH . M 5 HOH B 31 531 110 HOH HOH . M 5 HOH B 32 532 125 HOH HOH . M 5 HOH B 33 533 14 HOH HOH . M 5 HOH B 34 534 36 HOH HOH . M 5 HOH B 35 535 123 HOH HOH . M 5 HOH B 36 536 49 HOH HOH . M 5 HOH B 37 537 96 HOH HOH . M 5 HOH B 38 538 101 HOH HOH . M 5 HOH B 39 539 51 HOH HOH . M 5 HOH B 40 540 9 HOH HOH . M 5 HOH B 41 541 66 HOH HOH . M 5 HOH B 42 542 105 HOH HOH . M 5 HOH B 43 543 112 HOH HOH . M 5 HOH B 44 544 92 HOH HOH . M 5 HOH B 45 545 60 HOH HOH . M 5 HOH B 46 546 231 HOH HOH . M 5 HOH B 47 547 161 HOH HOH . M 5 HOH B 48 548 114 HOH HOH . M 5 HOH B 49 549 5 HOH HOH . M 5 HOH B 50 550 146 HOH HOH . M 5 HOH B 51 551 133 HOH HOH . M 5 HOH B 52 552 188 HOH HOH . M 5 HOH B 53 553 142 HOH HOH . M 5 HOH B 54 554 94 HOH HOH . M 5 HOH B 55 555 134 HOH HOH . M 5 HOH B 56 556 20 HOH HOH . M 5 HOH B 57 557 218 HOH HOH . M 5 HOH B 58 558 186 HOH HOH . M 5 HOH B 59 559 126 HOH HOH . N 5 HOH Y 1 201 47 HOH HOH . N 5 HOH Y 2 202 67 HOH HOH . N 5 HOH Y 3 203 88 HOH HOH . N 5 HOH Y 4 204 78 HOH HOH . N 5 HOH Y 5 205 163 HOH HOH . O 5 HOH Z 1 201 179 HOH HOH . O 5 HOH Z 2 202 86 HOH HOH . O 5 HOH Z 3 203 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.806 _atom_site.Cartn_y 26.719 _atom_site.Cartn_z -51.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id Y _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 512 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #