data_5KAM # _model_server_result.job_id pNj3RyV9Vludftq9QDem9A _model_server_result.datetime_utc '2024-12-25 17:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5KAM # _exptl.entry_id 5KAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAM _cell.length_a 94.054 _cell.length_b 109.819 _cell.length_c 45.292 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1,2 B,H,I,J,K,L,M,O 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 219.638 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -94.054 109.819 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 119 A GLU 113 1_555 F MG MG . A MG 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 A OD1 ASP 120 A ASP 114 1_555 F MG MG . A MG 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc3 A OD1 ASP 179 A ASP 173 1_555 G MG MG . A MG 3305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 D O3 SO4 . A SO4 3302 1_555 G MG MG . A MG 3305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc5 G MG MG . A MG 3305 1_555 N O HOH . A HOH 3402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc6 B OE2 GLU 119 C GLU 113 1_555 L MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 B OD1 ASP 120 C ASP 114 1_555 L MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc8 B OD1 ASP 179 C ASP 173 1_555 M MG MG . C MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 H O3' IMP . C IMP 301 1_555 K MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 J O1 SO4 . C SO4 303 1_555 K MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc11 J O3 SO4 . C SO4 303 1_555 M MG MG . C MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 5KAM _atom_sites.fract_transf_matrix[1][1] 0.010632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMP A 1 3301 3301 IMP IMP . D 3 SO4 A 1 3302 3 SO4 SO4 . E 3 SO4 A 1 3303 4 SO4 SO4 . F 4 MG A 1 3304 6 MG MG . G 4 MG A 1 3305 11 MG MG . H 2 IMP C 1 301 3300 IMP IMP . I 3 SO4 C 1 302 5 SO4 SO4 . J 3 SO4 C 1 303 6 SO4 SO4 . K 4 MG C 1 304 5 MG MG . L 4 MG C 1 305 9 MG MG . M 4 MG C 1 306 10 MG MG . N 5 HOH A 1 3401 2 HOH HOH . N 5 HOH A 2 3402 13 HOH HOH . N 5 HOH A 3 3403 4 HOH HOH . N 5 HOH A 4 3404 5 HOH HOH . N 5 HOH A 5 3405 31 HOH HOH . N 5 HOH A 6 3406 3 HOH HOH . N 5 HOH A 7 3407 39 HOH HOH . N 5 HOH A 8 3408 27 HOH HOH . N 5 HOH A 9 3409 42 HOH HOH . N 5 HOH A 10 3410 19 HOH HOH . N 5 HOH A 11 3411 47 HOH HOH . N 5 HOH A 12 3412 44 HOH HOH . N 5 HOH A 13 3413 34 HOH HOH . O 5 HOH C 1 401 9 HOH HOH . O 5 HOH C 2 402 23 HOH HOH . O 5 HOH C 3 403 22 HOH HOH . O 5 HOH C 4 404 8 HOH HOH . O 5 HOH C 5 405 36 HOH HOH . O 5 HOH C 6 406 18 HOH HOH . O 5 HOH C 7 407 21 HOH HOH . O 5 HOH C 8 408 38 HOH HOH . O 5 HOH C 9 409 29 HOH HOH . O 5 HOH C 10 410 24 HOH HOH . O 5 HOH C 11 411 7 HOH HOH . O 5 HOH C 12 412 26 HOH HOH . O 5 HOH C 13 413 1 HOH HOH . O 5 HOH C 14 414 10 HOH HOH . O 5 HOH C 15 415 35 HOH HOH . O 5 HOH C 16 416 25 HOH HOH . O 5 HOH C 17 417 48 HOH HOH . O 5 HOH C 18 418 28 HOH HOH . O 5 HOH C 19 419 37 HOH HOH . O 5 HOH C 20 420 43 HOH HOH . O 5 HOH C 21 421 49 HOH HOH . O 5 HOH C 22 422 41 HOH HOH . O 5 HOH C 23 423 20 HOH HOH . O 5 HOH C 24 424 17 HOH HOH . O 5 HOH C 25 425 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . H 2 -28.576 48.189 58.542 1 98.44 ? P IMP 301 C 1 HETATM 2 O O1P IMP . . . H 2 -29.864 48.136 57.755 1 99.33 ? O1P IMP 301 C 1 HETATM 3 O O2P IMP . . . H 2 -27.856 46.888 58.806 1 100.03 -1 O2P IMP 301 C 1 HETATM 4 O O3P IMP . . . H 2 -27.63 49.129 57.835 1 99.4 ? O3P IMP 301 C 1 HETATM 5 O O5' IMP . . . H 2 -28.94 48.81 59.964 1 90.67 ? O5' IMP 301 C 1 HETATM 6 C C5' IMP . . . H 2 -29.368 50.163 60.083 1 81.26 ? C5' IMP 301 C 1 HETATM 7 C C4' IMP . . . H 2 -30.681 50.27 60.819 1 72.11 ? C4' IMP 301 C 1 HETATM 8 O O4' IMP . . . H 2 -30.522 49.751 62.169 1 67.28 ? O4' IMP 301 C 1 HETATM 9 C C3' IMP . . . H 2 -31.237 51.687 60.968 1 68.92 ? C3' IMP 301 C 1 HETATM 10 O O3' IMP . . . H 2 -32.659 51.649 60.863 1 69.19 ? O3' IMP 301 C 1 HETATM 11 C C2' IMP . . . H 2 -30.842 52.056 62.394 1 67.29 ? C2' IMP 301 C 1 HETATM 12 O O2' IMP . . . H 2 -31.653 53.046 62.991 1 68.39 ? O2' IMP 301 C 1 HETATM 13 C C1' IMP . . . H 2 -30.975 50.712 63.101 1 64.48 ? C1' IMP 301 C 1 HETATM 14 N N9 IMP . . . H 2 -30.162 50.597 64.314 1 60.68 ? N9 IMP 301 C 1 HETATM 15 C C8 IMP . . . H 2 -28.901 51.099 64.51 1 59.25 ? C8 IMP 301 C 1 HETATM 16 N N7 IMP . . . H 2 -28.496 50.77 65.759 1 56.29 ? N7 IMP 301 C 1 HETATM 17 C C5 IMP . . . H 2 -29.475 50.056 66.359 1 55.85 ? C5 IMP 301 C 1 HETATM 18 C C6 IMP . . . H 2 -29.578 49.479 67.618 1 55.38 ? C6 IMP 301 C 1 HETATM 19 O O6 IMP . . . H 2 -28.709 49.683 68.465 1 55.76 ? O6 IMP 301 C 1 HETATM 20 N N1 IMP . . . H 2 -30.726 48.794 67.961 1 56.08 ? N1 IMP 301 C 1 HETATM 21 C C2 IMP . . . H 2 -31.761 48.686 67.054 1 55.29 ? C2 IMP 301 C 1 HETATM 22 N N3 IMP . . . H 2 -31.65 49.262 65.805 1 55.52 ? N3 IMP 301 C 1 HETATM 23 C C4 IMP . . . H 2 -30.527 49.936 65.461 1 56.86 ? C4 IMP 301 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #