data_5KAQ
#
_model_server_result.job_id            C7M7d4gW910QBWeIFStdgA 
_model_server_result.datetime_utc      '2024-12-02 16:52:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kaq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":603}' 
#
_entry.id    5KAQ 
#
_exptl.entry_id    5KAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.86 
_cell.angle_gamma         90 
_cell.entry_id            5KAQ 
_cell.length_a            279.435 
_cell.length_b            154.283 
_cell.length_c            157.937 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 473 A CYS 473 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 B SG CYS 14 C CYS 14 1_555 B SG CYS 466 C CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 52 C CYS 52 1_555 B SG CYS 277 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 B SG CYS 64 C CYS 64 1_555 B SG CYS 76 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 97 C CYS 97 1_555 B SG CYS 139 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 281 C CYS 281 1_555 B SG CYS 305 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 B SG CYS 473 C CYS 473 1_555 B SG CYS 477 C CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 C SG CYS 158 F CYS 158 1_555 C SG CYS 214 F CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf15 C SG CYS 234 F CYS 234 1_555 D SG CYS 214 G CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 D SG CYS 23 G CYS 23 1_555 D SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf17 D SG CYS 134 G CYS 134 1_555 D SG CYS 194 G CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf18 E SG CYS 14 B CYS 14 1_555 E SG CYS 466 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf19 E SG CYS 52 B CYS 52 1_555 E SG CYS 277 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 E SG CYS 64 B CYS 64 1_555 E SG CYS 76 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf21 E SG CYS 97 B CYS 97 1_555 E SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf22 E SG CYS 281 B CYS 281 1_555 E SG CYS 305 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf23 E SG CYS 473 B CYS 473 1_555 E SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf24 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf25 F SG CYS 158 H CYS 158 1_555 F SG CYS 214 H CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf26 F SG CYS 234 H CYS 234 1_555 G SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf27 G SG CYS 23 L CYS 23 1_555 G SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf28 G SG CYS 134 L CYS 134 1_555 G SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf29 H SG CYS 22 Q CYS 22 1_555 H SG CYS 96 Q CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf30 H SG CYS 158 Q CYS 158 1_555 H SG CYS 214 Q CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf31 H SG CYS 234 Q CYS 234 1_555 I SG CYS 214 R CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf32 I SG CYS 23 R CYS 23 1_555 I SG CYS 88 R CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf33 I SG CYS 134 R CYS 134 1_555 I SG CYS 194 R CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 22 A ASN 22 1_555 J C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 38 A ASN 38 1_555 K C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 A ND2 ASN 81 A ASN 81 1_555 L C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 N C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 A ND2 ASN 285 A ASN 285 1_555 O C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 A ND2 ASN 483 A ASN 483 1_555 M C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 B ND2 ASN 38 C ASN 38 1_555 Q C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 B ND2 ASN 81 C ASN 81 1_555 R C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 B ND2 ASN 165 C ASN 165 1_555 T C1 NAG . C NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 B ND2 ASN 285 C ASN 285 1_555 U C1 NAG . C NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale11 B ND2 ASN 483 C ASN 483 1_555 S C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale12 E ND2 ASN 22 B ASN 22 1_555 V C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale13 E ND2 ASN 38 B ASN 38 1_555 W C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale14 E ND2 ASN 81 B ASN 81 1_555 X C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale15 E ND2 ASN 165 B ASN 165 1_555 Z C1 NAG . B NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale16 E ND2 ASN 285 B ASN 285 1_555 AA C1 NAG . B NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale17 E ND2 ASN 483 B ASN 483 1_555 Y C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5KAQ 
_atom_sites.fract_transf_matrix[1][1]    0.003579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001812 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007097 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 NAG A 1 601 1022 NAG NAG . 
K 4 NAG A 1 602 1038 NAG NAG . 
L 4 NAG A 1 603 1081 NAG NAG . 
M 4 NAG A 1 604 1154 NAG NAG . 
N 4 NAG A 1 605 1165 NAG NAG . 
O 4 NAG A 1 606 1285 NAG NAG . 
P 4 NAG C 1 601 1022 NAG NAG . 
Q 4 NAG C 1 602 1038 NAG NAG . 
R 4 NAG C 1 603 1081 NAG NAG . 
S 4 NAG C 1 604 1154 NAG NAG . 
T 4 NAG C 1 605 1165 NAG NAG . 
U 4 NAG C 1 606 1285 NAG NAG . 
V 4 NAG B 1 601 1022 NAG NAG . 
W 4 NAG B 1 602 1038 NAG NAG . 
X 4 NAG B 1 603 1081 NAG NAG . 
Y 4 NAG B 1 604 1154 NAG NAG . 
Z 4 NAG B 1 605 1165 NAG NAG . 
AA 4 NAG B 1 606 1285 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . X 4 781.156 -21.059 289.137 1 153.72 ? C1 NAG 603 B 1 
HETATM 2 C C2 NAG . . . X 4 782.066 -21.409 287.961 1 159.02 ? C2 NAG 603 B 1 
HETATM 3 C C3 NAG . . . X 4 781.456 -22.545 287.145 1 163.77 ? C3 NAG 603 B 1 
HETATM 4 C C4 NAG . . . X 4 781.146 -23.737 288.043 1 167.08 ? C4 NAG 603 B 1 
HETATM 5 C C5 NAG . . . X 4 780.285 -23.303 289.227 1 166.67 ? C5 NAG 603 B 1 
HETATM 6 C C6 NAG . . . X 4 780.052 -24.415 290.225 1 167.87 ? C6 NAG 603 B 1 
HETATM 7 C C7 NAG . . . X 4 783.449 -19.553 287.143 1 155.63 ? C7 NAG 603 B 1 
HETATM 8 C C8 NAG . . . X 4 783.523 -18.382 286.209 1 155.9 ? C8 NAG 603 B 1 
HETATM 9 N N2 NAG . . . X 4 782.306 -20.247 287.121 1 157.94 ? N2 NAG 603 B 1 
HETATM 10 O O3 NAG . . . X 4 782.361 -22.93 286.117 1 164.82 ? O3 NAG 603 B 1 
HETATM 11 O O4 NAG . . . X 4 780.458 -24.739 287.303 1 168.48 ? O4 NAG 603 B 1 
HETATM 12 O O5 NAG . . . X 4 780.927 -22.233 289.937 1 161.9 ? O5 NAG 603 B 1 
HETATM 13 O O6 NAG . . . X 4 779.899 -23.913 291.546 1 167.39 ? O6 NAG 603 B 1 
HETATM 14 O O7 NAG . . . X 4 784.381 -19.856 287.882 1 153.1 ? O7 NAG 603 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#