data_5KAT # _model_server_result.job_id VxqorQoB3VIBHKm77RlT2Q _model_server_result.datetime_utc '2024-10-15 02:15:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KAT # _exptl.entry_id 5KAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRAPHENYLPHOSPHONIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAT _cell.length_a 73.529 _cell.length_b 73.529 _cell.length_c 66.408 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H20 P 1' _chem_comp.formula_weight 339.389 _chem_comp.id P4P _chem_comp.mon_nstd_flag . _chem_comp.name TETRAPHENYLPHOSPHONIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P C1A P4P sing 250 n n P C1C P4P sing 251 n n P C1D P4P sing 252 n n P C1B P4P sing 253 n n C1A C2A P4P sing 254 n y C1A C6A P4P doub 255 n y C2A C3A P4P doub 256 n y C2A H2A P4P sing 257 n n C3A C4A P4P sing 258 n y C3A H3A P4P sing 259 n n C4A C5A P4P doub 260 n y C4A H4A P4P sing 261 n n C5A C6A P4P sing 262 n y C5A H5A P4P sing 263 n n C6A H6A P4P sing 264 n n C1C C6C P4P doub 265 n y C1C C2C P4P sing 266 n y C6C C5C P4P sing 267 n y C6C H6C P4P sing 268 n n C5C C4C P4P doub 269 n y C5C H5C P4P sing 270 n n C4C C3C P4P sing 271 n y C4C H4C P4P sing 272 n n C3C C2C P4P doub 273 n y C3C H3C P4P sing 274 n n C2C H2C P4P sing 275 n n C1D C6D P4P doub 276 n y C1D C2D P4P sing 277 n y C6D C5D P4P sing 278 n y C6D H6D P4P sing 279 n n C5D C4D P4P doub 280 n y C5D H5D P4P sing 281 n n C4D C3D P4P sing 282 n y C4D H4D P4P sing 283 n n C3D C2D P4P doub 284 n y C3D H3D P4P sing 285 n n C2D H2D P4P sing 286 n n C6B C5B P4P doub 287 n y C6B C1B P4P sing 288 n y C6B H6B P4P sing 289 n n C5B C4B P4P sing 290 n y C5B H5B P4P sing 291 n n C4B C3B P4P doub 292 n y C4B H4B P4P sing 293 n n C3B C2B P4P sing 294 n y C3B H3B P4P sing 295 n n C2B C1B P4P doub 296 n y C2B H2B P4P sing 297 n n # _atom_sites.entry_id 5KAT _atom_sites.fract_transf_matrix[1][1] 0.0136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P4P A 1 201 1 P4P P4P . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 3 GOL GOL . F 3 GOL A 1 205 4 GOL GOL . G 3 GOL A 1 206 5 GOL GOL . H 3 GOL A 1 207 6 GOL GOL . I 3 GOL A 1 208 7 GOL GOL . J 4 HOH A 1 301 26 HOH HOH . J 4 HOH A 2 302 6 HOH HOH . J 4 HOH A 3 303 42 HOH HOH . J 4 HOH A 4 304 57 HOH HOH . J 4 HOH A 5 305 37 HOH HOH . J 4 HOH A 6 306 101 HOH HOH . J 4 HOH A 7 307 24 HOH HOH . J 4 HOH A 8 308 56 HOH HOH . J 4 HOH A 9 309 16 HOH HOH . J 4 HOH A 10 310 3 HOH HOH . J 4 HOH A 11 311 40 HOH HOH . J 4 HOH A 12 312 12 HOH HOH . J 4 HOH A 13 313 5 HOH HOH . J 4 HOH A 14 314 31 HOH HOH . J 4 HOH A 15 315 114 HOH HOH . J 4 HOH A 16 316 97 HOH HOH . J 4 HOH A 17 317 10 HOH HOH . J 4 HOH A 18 318 55 HOH HOH . J 4 HOH A 19 319 2 HOH HOH . J 4 HOH A 20 320 14 HOH HOH . J 4 HOH A 21 321 4 HOH HOH . J 4 HOH A 22 322 8 HOH HOH . J 4 HOH A 23 323 7 HOH HOH . J 4 HOH A 24 324 13 HOH HOH . J 4 HOH A 25 325 88 HOH HOH . J 4 HOH A 26 326 21 HOH HOH . J 4 HOH A 27 327 22 HOH HOH . J 4 HOH A 28 328 46 HOH HOH . J 4 HOH A 29 329 59 HOH HOH . J 4 HOH A 30 330 1 HOH HOH . J 4 HOH A 31 331 19 HOH HOH . J 4 HOH A 32 332 43 HOH HOH . J 4 HOH A 33 333 62 HOH HOH . J 4 HOH A 34 334 15 HOH HOH . J 4 HOH A 35 335 99 HOH HOH . J 4 HOH A 36 336 65 HOH HOH . J 4 HOH A 37 337 11 HOH HOH . J 4 HOH A 38 338 34 HOH HOH . J 4 HOH A 39 339 110 HOH HOH . J 4 HOH A 40 340 39 HOH HOH . J 4 HOH A 41 341 28 HOH HOH . J 4 HOH A 42 342 38 HOH HOH . J 4 HOH A 43 343 30 HOH HOH . J 4 HOH A 44 344 27 HOH HOH . J 4 HOH A 45 345 18 HOH HOH . J 4 HOH A 46 346 108 HOH HOH . J 4 HOH A 47 347 60 HOH HOH . J 4 HOH A 48 348 45 HOH HOH . J 4 HOH A 49 349 69 HOH HOH . J 4 HOH A 50 350 75 HOH HOH . J 4 HOH A 51 351 106 HOH HOH . J 4 HOH A 52 352 87 HOH HOH . J 4 HOH A 53 353 84 HOH HOH . J 4 HOH A 54 354 36 HOH HOH . J 4 HOH A 55 355 76 HOH HOH . J 4 HOH A 56 356 17 HOH HOH . J 4 HOH A 57 357 63 HOH HOH . J 4 HOH A 58 358 115 HOH HOH . J 4 HOH A 59 359 96 HOH HOH . J 4 HOH A 60 360 54 HOH HOH . J 4 HOH A 61 361 51 HOH HOH . J 4 HOH A 62 362 35 HOH HOH . J 4 HOH A 63 363 9 HOH HOH . J 4 HOH A 64 364 105 HOH HOH . J 4 HOH A 65 365 58 HOH HOH . J 4 HOH A 66 366 100 HOH HOH . J 4 HOH A 67 367 20 HOH HOH . J 4 HOH A 68 368 102 HOH HOH . J 4 HOH A 69 369 25 HOH HOH . J 4 HOH A 70 370 32 HOH HOH . J 4 HOH A 71 371 52 HOH HOH . J 4 HOH A 72 372 44 HOH HOH . J 4 HOH A 73 373 64 HOH HOH . J 4 HOH A 74 374 49 HOH HOH . J 4 HOH A 75 375 78 HOH HOH . J 4 HOH A 76 376 41 HOH HOH . J 4 HOH A 77 377 68 HOH HOH . J 4 HOH A 78 378 94 HOH HOH . J 4 HOH A 79 379 23 HOH HOH . J 4 HOH A 80 380 77 HOH HOH . J 4 HOH A 81 381 90 HOH HOH . J 4 HOH A 82 382 72 HOH HOH . J 4 HOH A 83 383 71 HOH HOH . J 4 HOH A 84 384 82 HOH HOH . J 4 HOH A 85 385 53 HOH HOH . J 4 HOH A 86 386 50 HOH HOH . J 4 HOH A 87 387 66 HOH HOH . J 4 HOH A 88 388 104 HOH HOH . J 4 HOH A 89 389 74 HOH HOH . J 4 HOH A 90 390 86 HOH HOH . J 4 HOH A 91 391 67 HOH HOH . J 4 HOH A 92 392 61 HOH HOH . J 4 HOH A 93 393 107 HOH HOH . J 4 HOH A 94 394 91 HOH HOH . J 4 HOH A 95 395 103 HOH HOH . J 4 HOH A 96 396 81 HOH HOH . J 4 HOH A 97 397 29 HOH HOH . J 4 HOH A 98 398 112 HOH HOH . J 4 HOH A 99 399 80 HOH HOH . J 4 HOH A 100 400 92 HOH HOH . J 4 HOH A 101 401 70 HOH HOH . J 4 HOH A 102 402 113 HOH HOH . J 4 HOH A 103 403 85 HOH HOH . J 4 HOH A 104 404 47 HOH HOH . J 4 HOH A 105 405 83 HOH HOH . J 4 HOH A 106 406 79 HOH HOH . J 4 HOH A 107 407 98 HOH HOH . J 4 HOH A 108 408 111 HOH HOH . J 4 HOH A 109 409 73 HOH HOH . J 4 HOH A 110 410 33 HOH HOH . J 4 HOH A 111 411 95 HOH HOH . J 4 HOH A 112 412 48 HOH HOH . J 4 HOH A 113 413 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P P4P . . . B 2 -15.829 -13.126 -8.458 1 70.46 ? P P4P 201 A 1 HETATM 2 C C1A P4P . . . B 2 -14.544 -12.305 -9.445 1 79 ? C1A P4P 201 A 1 HETATM 3 C C2A P4P . . . B 2 -13.478 -11.667 -8.835 1 78.53 ? C2A P4P 201 A 1 HETATM 4 C C3A P4P . . . B 2 -12.509 -11.049 -9.612 1 81.57 ? C3A P4P 201 A 1 HETATM 5 C C4A P4P . . . B 2 -12.604 -11.068 -10.995 1 84.9 ? C4A P4P 201 A 1 HETATM 6 C C5A P4P . . . B 2 -13.67 -11.707 -11.604 1 85.64 ? C5A P4P 201 A 1 HETATM 7 C C6A P4P . . . B 2 -14.639 -12.326 -10.83 1 82.81 ? C6A P4P 201 A 1 HETATM 8 C C1C P4P . . . B 2 -17.329 -12.091 -8.497 1 71.03 ? C1C P4P 201 A 1 HETATM 9 C C6C P4P . . . B 2 -17.267 -10.807 -9.023 1 72.62 ? C6C P4P 201 A 1 HETATM 10 C C5C P4P . . . B 2 -18.401 -10.008 -9.056 1 75.43 ? C5C P4P 201 A 1 HETATM 11 C C4C P4P . . . B 2 -19.602 -10.49 -8.561 1 76.97 ? C4C P4P 201 A 1 HETATM 12 C C3C P4P . . . B 2 -19.666 -11.771 -8.034 1 74.96 ? C3C P4P 201 A 1 HETATM 13 C C2C P4P . . . B 2 -18.532 -12.57 -8.001 1 72.48 ? C2C P4P 201 A 1 HETATM 14 C C1D P4P . . . B 2 -16.104 -14.747 -9.236 1 63.11 ? C1D P4P 201 A 1 HETATM 15 C C6D P4P . . . B 2 -15.264 -15.812 -8.952 1 65.45 ? C6D P4P 201 A 1 HETATM 16 C C5D P4P . . . B 2 -15.464 -17.048 -9.549 1 68.08 ? C5D P4P 201 A 1 HETATM 17 C C4D P4P . . . B 2 -16.507 -17.219 -10.443 1 68.38 ? C4D P4P 201 A 1 HETATM 18 C C3D P4P . . . B 2 -17.337 -16.152 -10.738 1 66.15 ? C3D P4P 201 A 1 HETATM 19 C C2D P4P . . . B 2 -17.139 -14.92 -10.135 1 63.38 ? C2D P4P 201 A 1 HETATM 20 C C6B P4P . . . B 2 -16.059 -12.786 -5.7 1 69.47 ? C6B P4P 201 A 1 HETATM 21 C C5B P4P . . . B 2 -15.67 -12.946 -4.378 1 70.67 ? C5B P4P 201 A 1 HETATM 22 C C4B P4P . . . B 2 -14.522 -13.659 -4.076 1 71.82 ? C4B P4P 201 A 1 HETATM 23 C C3B P4P . . . B 2 -13.765 -14.212 -5.096 1 71.99 ? C3B P4P 201 A 1 HETATM 24 C C2B P4P . . . B 2 -14.155 -14.052 -6.417 1 70.07 ? C2B P4P 201 A 1 HETATM 25 C C1B P4P . . . B 2 -15.304 -13.339 -6.726 1 69.09 ? C1B P4P 201 A 1 HETATM 26 H H2A P4P . . . B 2 -13.408 -11.652 -7.862 1 94.24 ? H2A P4P 201 A 1 HETATM 27 H H3A P4P . . . B 2 -11.758 -10.598 -9.182 1 97.89 ? H3A P4P 201 A 1 HETATM 28 H H4A P4P . . . B 2 -11.92 -10.632 -11.537 1 101.87 ? H4A P4P 201 A 1 HETATM 29 H H5A P4P . . . B 2 -13.739 -11.722 -12.578 1 102.77 ? H5A P4P 201 A 1 HETATM 30 H H6A P4P . . . B 2 -15.391 -12.776 -11.26 1 99.38 ? H6A P4P 201 A 1 HETATM 31 H H6C P4P . . . B 2 -16.422 -10.465 -9.372 1 87.14 ? H6C P4P 201 A 1 HETATM 32 H H5C P4P . . . B 2 -18.352 -9.107 -9.428 1 90.51 ? H5C P4P 201 A 1 HETATM 33 H H4C P4P . . . B 2 -20.4 -9.93 -8.584 1 92.36 ? H4C P4P 201 A 1 HETATM 34 H H3C P4P . . . B 2 -20.511 -12.111 -7.685 1 89.95 ? H3C P4P 201 A 1 HETATM 35 H H2C P4P . . . B 2 -18.582 -13.471 -7.628 1 86.98 ? H2C P4P 201 A 1 HETATM 36 H H6D P4P . . . B 2 -14.53 -15.694 -8.319 1 78.54 ? H6D P4P 201 A 1 HETATM 37 H H5D P4P . . . B 2 -14.873 -17.795 -9.338 1 81.7 ? H5D P4P 201 A 1 HETATM 38 H H4D P4P . . . B 2 -16.652 -18.086 -10.868 1 82.05 ? H4D P4P 201 A 1 HETATM 39 H H3D P4P . . . B 2 -18.074 -16.271 -11.366 1 79.38 ? H3D P4P 201 A 1 HETATM 40 H H2D P4P . . . B 2 -17.73 -14.172 -10.347 1 76.05 ? H2D P4P 201 A 1 HETATM 41 H H6B P4P . . . B 2 -16.87 -12.284 -5.91 1 83.36 ? H6B P4P 201 A 1 HETATM 42 H H5B P4P . . . B 2 -16.204 -12.554 -3.661 1 84.8 ? H5B P4P 201 A 1 HETATM 43 H H4B P4P . . . B 2 -14.246 -13.77 -3.146 1 86.19 ? H4B P4P 201 A 1 HETATM 44 H H3B P4P . . . B 2 -12.956 -14.714 -4.885 1 86.39 ? H3B P4P 201 A 1 HETATM 45 H H2B P4P . . . B 2 -13.62 -14.444 -7.133 1 84.08 ? H2B P4P 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #