data_5KAT # _model_server_result.job_id 7C7CiMuHwizOTkJTCVJWWQ _model_server_result.datetime_utc '2024-11-27 21:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5KAT # _exptl.entry_id 5KAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAT _cell.length_a 73.529 _cell.length_b 73.529 _cell.length_c 66.408 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KAT _atom_sites.fract_transf_matrix[1][1] 0.0136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P4P A 1 201 1 P4P P4P . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 3 GOL GOL . F 3 GOL A 1 205 4 GOL GOL . G 3 GOL A 1 206 5 GOL GOL . H 3 GOL A 1 207 6 GOL GOL . I 3 GOL A 1 208 7 GOL GOL . J 4 HOH A 1 301 26 HOH HOH . J 4 HOH A 2 302 6 HOH HOH . J 4 HOH A 3 303 42 HOH HOH . J 4 HOH A 4 304 57 HOH HOH . J 4 HOH A 5 305 37 HOH HOH . J 4 HOH A 6 306 101 HOH HOH . J 4 HOH A 7 307 24 HOH HOH . J 4 HOH A 8 308 56 HOH HOH . J 4 HOH A 9 309 16 HOH HOH . J 4 HOH A 10 310 3 HOH HOH . J 4 HOH A 11 311 40 HOH HOH . J 4 HOH A 12 312 12 HOH HOH . J 4 HOH A 13 313 5 HOH HOH . J 4 HOH A 14 314 31 HOH HOH . J 4 HOH A 15 315 114 HOH HOH . J 4 HOH A 16 316 97 HOH HOH . J 4 HOH A 17 317 10 HOH HOH . J 4 HOH A 18 318 55 HOH HOH . J 4 HOH A 19 319 2 HOH HOH . J 4 HOH A 20 320 14 HOH HOH . J 4 HOH A 21 321 4 HOH HOH . J 4 HOH A 22 322 8 HOH HOH . J 4 HOH A 23 323 7 HOH HOH . J 4 HOH A 24 324 13 HOH HOH . J 4 HOH A 25 325 88 HOH HOH . J 4 HOH A 26 326 21 HOH HOH . J 4 HOH A 27 327 22 HOH HOH . J 4 HOH A 28 328 46 HOH HOH . J 4 HOH A 29 329 59 HOH HOH . J 4 HOH A 30 330 1 HOH HOH . J 4 HOH A 31 331 19 HOH HOH . J 4 HOH A 32 332 43 HOH HOH . J 4 HOH A 33 333 62 HOH HOH . J 4 HOH A 34 334 15 HOH HOH . J 4 HOH A 35 335 99 HOH HOH . J 4 HOH A 36 336 65 HOH HOH . J 4 HOH A 37 337 11 HOH HOH . J 4 HOH A 38 338 34 HOH HOH . J 4 HOH A 39 339 110 HOH HOH . J 4 HOH A 40 340 39 HOH HOH . J 4 HOH A 41 341 28 HOH HOH . J 4 HOH A 42 342 38 HOH HOH . J 4 HOH A 43 343 30 HOH HOH . J 4 HOH A 44 344 27 HOH HOH . J 4 HOH A 45 345 18 HOH HOH . J 4 HOH A 46 346 108 HOH HOH . J 4 HOH A 47 347 60 HOH HOH . J 4 HOH A 48 348 45 HOH HOH . J 4 HOH A 49 349 69 HOH HOH . J 4 HOH A 50 350 75 HOH HOH . J 4 HOH A 51 351 106 HOH HOH . J 4 HOH A 52 352 87 HOH HOH . J 4 HOH A 53 353 84 HOH HOH . J 4 HOH A 54 354 36 HOH HOH . J 4 HOH A 55 355 76 HOH HOH . J 4 HOH A 56 356 17 HOH HOH . J 4 HOH A 57 357 63 HOH HOH . J 4 HOH A 58 358 115 HOH HOH . J 4 HOH A 59 359 96 HOH HOH . J 4 HOH A 60 360 54 HOH HOH . J 4 HOH A 61 361 51 HOH HOH . J 4 HOH A 62 362 35 HOH HOH . J 4 HOH A 63 363 9 HOH HOH . J 4 HOH A 64 364 105 HOH HOH . J 4 HOH A 65 365 58 HOH HOH . J 4 HOH A 66 366 100 HOH HOH . J 4 HOH A 67 367 20 HOH HOH . J 4 HOH A 68 368 102 HOH HOH . J 4 HOH A 69 369 25 HOH HOH . J 4 HOH A 70 370 32 HOH HOH . J 4 HOH A 71 371 52 HOH HOH . J 4 HOH A 72 372 44 HOH HOH . J 4 HOH A 73 373 64 HOH HOH . J 4 HOH A 74 374 49 HOH HOH . J 4 HOH A 75 375 78 HOH HOH . J 4 HOH A 76 376 41 HOH HOH . J 4 HOH A 77 377 68 HOH HOH . J 4 HOH A 78 378 94 HOH HOH . J 4 HOH A 79 379 23 HOH HOH . J 4 HOH A 80 380 77 HOH HOH . J 4 HOH A 81 381 90 HOH HOH . J 4 HOH A 82 382 72 HOH HOH . J 4 HOH A 83 383 71 HOH HOH . J 4 HOH A 84 384 82 HOH HOH . J 4 HOH A 85 385 53 HOH HOH . J 4 HOH A 86 386 50 HOH HOH . J 4 HOH A 87 387 66 HOH HOH . J 4 HOH A 88 388 104 HOH HOH . J 4 HOH A 89 389 74 HOH HOH . J 4 HOH A 90 390 86 HOH HOH . J 4 HOH A 91 391 67 HOH HOH . J 4 HOH A 92 392 61 HOH HOH . J 4 HOH A 93 393 107 HOH HOH . J 4 HOH A 94 394 91 HOH HOH . J 4 HOH A 95 395 103 HOH HOH . J 4 HOH A 96 396 81 HOH HOH . J 4 HOH A 97 397 29 HOH HOH . J 4 HOH A 98 398 112 HOH HOH . J 4 HOH A 99 399 80 HOH HOH . J 4 HOH A 100 400 92 HOH HOH . J 4 HOH A 101 401 70 HOH HOH . J 4 HOH A 102 402 113 HOH HOH . J 4 HOH A 103 403 85 HOH HOH . J 4 HOH A 104 404 47 HOH HOH . J 4 HOH A 105 405 83 HOH HOH . J 4 HOH A 106 406 79 HOH HOH . J 4 HOH A 107 407 98 HOH HOH . J 4 HOH A 108 408 111 HOH HOH . J 4 HOH A 109 409 73 HOH HOH . J 4 HOH A 110 410 33 HOH HOH . J 4 HOH A 111 411 95 HOH HOH . J 4 HOH A 112 412 48 HOH HOH . J 4 HOH A 113 413 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -27.274 -9.667 -23.419 1 89.67 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 -27.84 -10.955 -23.51 1 86.82 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 -26.245 -9.621 -22.294 1 92.96 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 -24.951 -9.77 -22.829 1 91.18 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 -26.343 -8.294 -21.551 1 96.31 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 -27.519 -8.261 -20.774 1 96.87 ? O3 GOL 203 A 1 HETATM 7 H H11 GOL . . . D 3 -28.058 -8.935 -23.227 1 107.61 ? H11 GOL 203 A 1 HETATM 8 H H12 GOL . . . D 3 -26.795 -9.41 -24.363 1 107.61 ? H12 GOL 203 A 1 HETATM 9 H HO1 GOL . . . D 3 -28.545 -10.954 -24.191 1 104.18 ? HO1 GOL 203 A 1 HETATM 10 H H2 GOL . . . D 3 -26.453 -10.431 -21.595 1 111.55 ? H2 GOL 203 A 1 HETATM 11 H HO2 GOL . . . D 3 -24.763 -9.028 -23.441 1 109.41 ? HO2 GOL 203 A 1 HETATM 12 H H31 GOL . . . D 3 -26.353 -7.472 -22.266 1 115.58 ? H31 GOL 203 A 1 HETATM 13 H H32 GOL . . . D 3 -25.474 -8.17 -20.905 1 115.58 ? H32 GOL 203 A 1 HETATM 14 H HO3 GOL . . . D 3 -27.477 -7.506 -20.15 1 116.24 ? HO3 GOL 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #