data_5KAU # _model_server_result.job_id FoK8oWRvGyXVnvI8qzyVRw _model_server_result.datetime_utc '2024-10-15 00:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KAU # _exptl.entry_id 5KAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RHODAMINE 6G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAU _cell.length_a 73.347 _cell.length_b 73.347 _cell.length_c 65.342 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'RHODAMINE 6G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RHQ sing 290 n y C1 C6 RHQ doub 291 n y C1 O1 RHQ sing 292 n y C2 C3 RHQ sing 293 n y C2 C9 RHQ doub 294 n y C3 C4 RHQ doub 295 n y C3 H31 RHQ sing 296 n n C4 C5 RHQ sing 297 n y C4 C21 RHQ sing 298 n n C5 C6 RHQ sing 299 n y C5 N2 RHQ doub 300 z n C6 H61 RHQ sing 301 n n O1 C7 RHQ sing 302 n y C7 C8 RHQ doub 303 n y C7 C10 RHQ sing 304 n y C8 C9 RHQ sing 305 n y C8 C13 RHQ sing 306 n y C9 C14 RHQ sing 307 n y C10 C11 RHQ doub 308 n y C10 H101 RHQ sing 309 n n C11 C12 RHQ sing 310 n y C11 N1 RHQ sing 311 n n C12 C13 RHQ doub 312 n y C12 C20 RHQ sing 313 n n C13 H131 RHQ sing 314 n n N1 C22 RHQ sing 315 n n N1 HN11 RHQ sing 316 n n C14 C15 RHQ doub 317 n y C14 C19 RHQ sing 318 n y C15 C16 RHQ sing 319 n y C15 H151 RHQ sing 320 n n C16 C17 RHQ doub 321 n y C16 H161 RHQ sing 322 n n C17 C18 RHQ sing 323 n y C17 H171 RHQ sing 324 n n C18 C19 RHQ doub 325 n y C18 H181 RHQ sing 326 n n C19 C26 RHQ sing 327 n n C20 H201 RHQ sing 328 n n C20 H202 RHQ sing 329 n n C20 H203 RHQ sing 330 n n C21 H211 RHQ sing 331 n n C21 H212 RHQ sing 332 n n C21 H213 RHQ sing 333 n n C22 C23 RHQ sing 334 n n C22 H221 RHQ sing 335 n n C22 H222 RHQ sing 336 n n C23 H231 RHQ sing 337 n n C23 H232 RHQ sing 338 n n C23 H233 RHQ sing 339 n n N2 C24 RHQ sing 340 n n N2 HN21 RHQ sing 341 n n C24 C25 RHQ sing 342 n n C24 H241 RHQ sing 343 n n C24 H242 RHQ sing 344 n n C25 H251 RHQ sing 345 n n C25 H252 RHQ sing 346 n n C25 H253 RHQ sing 347 n n C26 O27 RHQ doub 348 n n C26 O2 RHQ sing 349 n n O2 C28 RHQ sing 350 n n C28 C29 RHQ sing 351 n n C28 H281 RHQ sing 352 n n C28 H282 RHQ sing 353 n n C29 H291 RHQ sing 354 n n C29 H292 RHQ sing 355 n n C29 H293 RHQ sing 356 n n # _atom_sites.entry_id 5KAU _atom_sites.fract_transf_matrix[1][1] 0.013634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHQ A 1 201 1 RHQ RHQ . C 3 GOL A 1 202 2 GOL GOL . D 3 GOL A 1 203 3 GOL GOL . E 3 GOL A 1 204 4 GOL GOL . F 3 GOL A 1 205 5 GOL GOL . G 4 HOH A 1 301 48 HOH HOH . G 4 HOH A 2 302 5 HOH HOH . G 4 HOH A 3 303 71 HOH HOH . G 4 HOH A 4 304 80 HOH HOH . G 4 HOH A 5 305 82 HOH HOH . G 4 HOH A 6 306 25 HOH HOH . G 4 HOH A 7 307 83 HOH HOH . G 4 HOH A 8 308 43 HOH HOH . G 4 HOH A 9 309 75 HOH HOH . G 4 HOH A 10 310 10 HOH HOH . G 4 HOH A 11 311 32 HOH HOH . G 4 HOH A 12 312 11 HOH HOH . G 4 HOH A 13 313 13 HOH HOH . G 4 HOH A 14 314 7 HOH HOH . G 4 HOH A 15 315 30 HOH HOH . G 4 HOH A 16 316 54 HOH HOH . G 4 HOH A 17 317 14 HOH HOH . G 4 HOH A 18 318 31 HOH HOH . G 4 HOH A 19 319 6 HOH HOH . G 4 HOH A 20 320 1 HOH HOH . G 4 HOH A 21 321 19 HOH HOH . G 4 HOH A 22 322 33 HOH HOH . G 4 HOH A 23 323 64 HOH HOH . G 4 HOH A 24 324 41 HOH HOH . G 4 HOH A 25 325 27 HOH HOH . G 4 HOH A 26 326 35 HOH HOH . G 4 HOH A 27 327 44 HOH HOH . G 4 HOH A 28 328 18 HOH HOH . G 4 HOH A 29 329 15 HOH HOH . G 4 HOH A 30 330 12 HOH HOH . G 4 HOH A 31 331 67 HOH HOH . G 4 HOH A 32 332 50 HOH HOH . G 4 HOH A 33 333 3 HOH HOH . G 4 HOH A 34 334 4 HOH HOH . G 4 HOH A 35 335 36 HOH HOH . G 4 HOH A 36 336 9 HOH HOH . G 4 HOH A 37 337 2 HOH HOH . G 4 HOH A 38 338 8 HOH HOH . G 4 HOH A 39 339 40 HOH HOH . G 4 HOH A 40 340 39 HOH HOH . G 4 HOH A 41 341 63 HOH HOH . G 4 HOH A 42 342 23 HOH HOH . G 4 HOH A 43 343 26 HOH HOH . G 4 HOH A 44 344 17 HOH HOH . G 4 HOH A 45 345 59 HOH HOH . G 4 HOH A 46 346 47 HOH HOH . G 4 HOH A 47 347 28 HOH HOH . G 4 HOH A 48 348 72 HOH HOH . G 4 HOH A 49 349 49 HOH HOH . G 4 HOH A 50 350 46 HOH HOH . G 4 HOH A 51 351 20 HOH HOH . G 4 HOH A 52 352 51 HOH HOH . G 4 HOH A 53 353 66 HOH HOH . G 4 HOH A 54 354 24 HOH HOH . G 4 HOH A 55 355 16 HOH HOH . G 4 HOH A 56 356 34 HOH HOH . G 4 HOH A 57 357 52 HOH HOH . G 4 HOH A 58 358 86 HOH HOH . G 4 HOH A 59 359 58 HOH HOH . G 4 HOH A 60 360 55 HOH HOH . G 4 HOH A 61 361 81 HOH HOH . G 4 HOH A 62 362 45 HOH HOH . G 4 HOH A 63 363 42 HOH HOH . G 4 HOH A 64 364 65 HOH HOH . G 4 HOH A 65 365 21 HOH HOH . G 4 HOH A 66 366 70 HOH HOH . G 4 HOH A 67 367 38 HOH HOH . G 4 HOH A 68 368 53 HOH HOH . G 4 HOH A 69 369 62 HOH HOH . G 4 HOH A 70 370 22 HOH HOH . G 4 HOH A 71 371 78 HOH HOH . G 4 HOH A 72 372 87 HOH HOH . G 4 HOH A 73 373 85 HOH HOH . G 4 HOH A 74 374 60 HOH HOH . G 4 HOH A 75 375 68 HOH HOH . G 4 HOH A 76 376 74 HOH HOH . G 4 HOH A 77 377 84 HOH HOH . G 4 HOH A 78 378 88 HOH HOH . G 4 HOH A 79 379 79 HOH HOH . G 4 HOH A 80 380 76 HOH HOH . G 4 HOH A 81 381 77 HOH HOH . G 4 HOH A 82 382 56 HOH HOH . G 4 HOH A 83 383 37 HOH HOH . G 4 HOH A 84 384 73 HOH HOH . G 4 HOH A 85 385 69 HOH HOH . G 4 HOH A 86 386 29 HOH HOH . G 4 HOH A 87 387 57 HOH HOH . G 4 HOH A 88 388 61 HOH HOH . G 4 HOH A 89 389 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RHQ . . . B 2 1.775 -12.168 -18.218 1 51.26 ? C1 RHQ 201 A 1 HETATM 2 C C2 RHQ . . . B 2 2.841 -11.286 -18.069 1 51.53 ? C2 RHQ 201 A 1 HETATM 3 C C3 RHQ . . . B 2 3.964 -11.491 -18.922 1 49.1 ? C3 RHQ 201 A 1 HETATM 4 C C4 RHQ . . . B 2 4.005 -12.494 -19.84 1 47.15 ? C4 RHQ 201 A 1 HETATM 5 C C5 RHQ . . . B 2 2.889 -13.383 -19.97 1 47.6 ? C5 RHQ 201 A 1 HETATM 6 C C6 RHQ . . . B 2 1.78 -13.207 -19.132 1 46.17 ? C6 RHQ 201 A 1 HETATM 7 O O1 RHQ . . . B 2 0.668 -12.035 -17.447 1 52.8 ? O1 RHQ 201 A 1 HETATM 8 C C7 RHQ . . . B 2 0.569 -11.033 -16.521 1 53.59 ? C7 RHQ 201 A 1 HETATM 9 C C8 RHQ . . . B 2 1.622 -10.128 -16.33 1 54.48 ? C8 RHQ 201 A 1 HETATM 10 C C9 RHQ . . . B 2 2.743 -10.252 -17.141 1 58.46 ? C9 RHQ 201 A 1 HETATM 11 C C10 RHQ . . . B 2 -0.602 -10.983 -15.799 1 52.07 ? C10 RHQ 201 A 1 HETATM 12 C C11 RHQ . . . B 2 -0.753 -9.994 -14.821 1 52.81 ? C11 RHQ 201 A 1 HETATM 13 C C12 RHQ . . . B 2 0.314 -9.054 -14.6 1 54.96 ? C12 RHQ 201 A 1 HETATM 14 C C13 RHQ . . . B 2 1.452 -9.124 -15.334 1 54.47 ? C13 RHQ 201 A 1 HETATM 15 N N1 RHQ . . . B 2 -1.881 -9.906 -14.071 1 53.86 ? N1 RHQ 201 A 1 HETATM 16 C C14 RHQ . . . B 2 3.859 -9.385 -16.894 1 68.94 ? C14 RHQ 201 A 1 HETATM 17 C C15 RHQ . . . B 2 4.418 -9.74 -15.674 1 72.65 ? C15 RHQ 201 A 1 HETATM 18 C C16 RHQ . . . B 2 5.528 -9.102 -15.189 1 76.52 ? C16 RHQ 201 A 1 HETATM 19 C C17 RHQ . . . B 2 6.082 -8.136 -15.977 1 78.59 ? C17 RHQ 201 A 1 HETATM 20 C C18 RHQ . . . B 2 5.543 -7.784 -17.232 1 78.82 ? C18 RHQ 201 A 1 HETATM 21 C C19 RHQ . . . B 2 4.412 -8.408 -17.745 1 74.14 ? C19 RHQ 201 A 1 HETATM 22 C C20 RHQ . . . B 2 0.174 -7.987 -13.578 1 57.59 ? C20 RHQ 201 A 1 HETATM 23 C C21 RHQ . . . B 2 5.196 -12.636 -20.738 1 47.9 ? C21 RHQ 201 A 1 HETATM 24 C C22 RHQ . . . B 2 -3.11 -10.661 -14.336 1 53.87 ? C22 RHQ 201 A 1 HETATM 25 C C23 RHQ . . . B 2 -3.831 -10.151 -15.575 1 53.73 ? C23 RHQ 201 A 1 HETATM 26 N N2 RHQ . . . B 2 2.983 -14.398 -20.882 1 46.22 ? N2 RHQ 201 A 1 HETATM 27 C C24 RHQ . . . B 2 1.903 -15.33 -21.23 1 47.4 ? C24 RHQ 201 A 1 HETATM 28 C C25 RHQ . . . B 2 2.333 -16.255 -22.36 1 45.98 ? C25 RHQ 201 A 1 HETATM 29 C C26 RHQ . . . B 2 4.122 -8.36 -19.195 1 74.66 ? C26 RHQ 201 A 1 HETATM 30 O O27 RHQ . . . B 2 2.879 -8.744 -19.518 1 70.87 ? O27 RHQ 201 A 1 HETATM 31 O O2 RHQ . . . B 2 4.965 -8.547 -20.063 1 77.44 ? O2 RHQ 201 A 1 HETATM 32 C C28 RHQ . . . B 2 4.745 -7.717 -21.175 1 80.15 ? C28 RHQ 201 A 1 HETATM 33 C C29 RHQ . . . B 2 6.042 -7.601 -21.949 1 81.46 ? C29 RHQ 201 A 1 HETATM 34 H H31 RHQ . . . B 2 4.818 -10.821 -18.825 1 58.92 ? H31 RHQ 201 A 1 HETATM 35 H H61 RHQ . . . B 2 0.916 -13.86 -19.229 1 55.4 ? H61 RHQ 201 A 1 HETATM 36 H H101 RHQ . . . B 2 -1.4 -11.712 -15.956 1 62.48 ? H101 RHQ 201 A 1 HETATM 37 H H131 RHQ . . . B 2 2.248 -8.401 -15.16 1 65.36 ? H131 RHQ 201 A 1 HETATM 38 H HN11 RHQ . . . B 2 -1.885 -9.294 -13.26 1 64.63 ? HN11 RHQ 201 A 1 HETATM 39 H H151 RHQ . . . B 2 3.962 -10.522 -15.063 1 87.18 ? H151 RHQ 201 A 1 HETATM 40 H H161 RHQ . . . B 2 5.964 -9.357 -14.221 1 91.82 ? H161 RHQ 201 A 1 HETATM 41 H H171 RHQ . . . B 2 6.965 -7.603 -15.618 1 94.31 ? H171 RHQ 201 A 1 HETATM 42 H H181 RHQ . . . B 2 6.03 -6.992 -17.803 1 94.58 ? H181 RHQ 201 A 1 HETATM 43 H H201 RHQ . . . B 2 1.101 -7.406 -13.483 1 69.1 ? H201 RHQ 201 A 1 HETATM 44 H H202 RHQ . . . B 2 -0.07 -8.407 -12.595 1 69.1 ? H202 RHQ 201 A 1 HETATM 45 H H203 RHQ . . . B 2 -0.64 -7.283 -13.81 1 69.1 ? H203 RHQ 201 A 1 HETATM 46 H H211 RHQ . . . B 2 5.932 -13.315 -20.283 1 57.48 ? H211 RHQ 201 A 1 HETATM 47 H H212 RHQ . . . B 2 4.944 -13.045 -21.729 1 57.48 ? H212 RHQ 201 A 1 HETATM 48 H H213 RHQ . . . B 2 5.689 -11.674 -20.919 1 57.48 ? H213 RHQ 201 A 1 HETATM 49 H H221 RHQ . . . B 2 -2.844 -11.733 -14.448 1 64.65 ? H221 RHQ 201 A 1 HETATM 50 H H222 RHQ . . . B 2 -3.799 -10.63 -13.458 1 64.65 ? H222 RHQ 201 A 1 HETATM 51 H H231 RHQ . . . B 2 -4.77 -10.689 -15.763 1 64.47 ? H231 RHQ 201 A 1 HETATM 52 H H232 RHQ . . . B 2 -4.039 -9.078 -15.502 1 64.47 ? H232 RHQ 201 A 1 HETATM 53 H H233 RHQ . . . B 2 -3.183 -10.293 -16.447 1 64.47 ? H233 RHQ 201 A 1 HETATM 54 H HN21 RHQ . . . B 2 3.877 -14.531 -21.348 1 55.47 ? HN21 RHQ 201 A 1 HETATM 55 H H241 RHQ . . . B 2 0.986 -14.771 -21.532 1 56.88 ? H241 RHQ 201 A 1 HETATM 56 H H242 RHQ . . . B 2 1.614 -15.934 -20.34 1 56.88 ? H242 RHQ 201 A 1 HETATM 57 H H251 RHQ . . . B 2 3.177 -16.897 -22.079 1 55.17 ? H251 RHQ 201 A 1 HETATM 58 H H252 RHQ . . . B 2 1.492 -16.922 -22.586 1 55.17 ? H252 RHQ 201 A 1 HETATM 59 H H253 RHQ . . . B 2 2.558 -15.712 -23.287 1 55.17 ? H253 RHQ 201 A 1 HETATM 60 H H281 RHQ . . . B 2 3.938 -8.144 -21.816 1 96.18 ? H281 RHQ 201 A 1 HETATM 61 H H282 RHQ . . . B 2 4.394 -6.725 -20.841 1 96.18 ? H282 RHQ 201 A 1 HETATM 62 H H291 RHQ . . . B 2 6.08 -6.655 -22.497 1 97.75 ? H291 RHQ 201 A 1 HETATM 63 H H292 RHQ . . . B 2 6.236 -8.435 -22.635 1 97.75 ? H292 RHQ 201 A 1 HETATM 64 H H293 RHQ . . . B 2 6.874 -7.547 -21.234 1 97.75 ? H293 RHQ 201 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 748 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 64 #