data_5KAU # _model_server_result.job_id xuTJgWFeP1x7hZczILoMbQ _model_server_result.datetime_utc '2024-11-24 02:52:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5KAU # _exptl.entry_id 5KAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAU _cell.length_a 73.347 _cell.length_b 73.347 _cell.length_c 65.342 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KAU _atom_sites.fract_transf_matrix[1][1] 0.013634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHQ A 1 201 1 RHQ RHQ . C 3 GOL A 1 202 2 GOL GOL . D 3 GOL A 1 203 3 GOL GOL . E 3 GOL A 1 204 4 GOL GOL . F 3 GOL A 1 205 5 GOL GOL . G 4 HOH A 1 301 48 HOH HOH . G 4 HOH A 2 302 5 HOH HOH . G 4 HOH A 3 303 71 HOH HOH . G 4 HOH A 4 304 80 HOH HOH . G 4 HOH A 5 305 82 HOH HOH . G 4 HOH A 6 306 25 HOH HOH . G 4 HOH A 7 307 83 HOH HOH . G 4 HOH A 8 308 43 HOH HOH . G 4 HOH A 9 309 75 HOH HOH . G 4 HOH A 10 310 10 HOH HOH . G 4 HOH A 11 311 32 HOH HOH . G 4 HOH A 12 312 11 HOH HOH . G 4 HOH A 13 313 13 HOH HOH . G 4 HOH A 14 314 7 HOH HOH . G 4 HOH A 15 315 30 HOH HOH . G 4 HOH A 16 316 54 HOH HOH . G 4 HOH A 17 317 14 HOH HOH . G 4 HOH A 18 318 31 HOH HOH . G 4 HOH A 19 319 6 HOH HOH . G 4 HOH A 20 320 1 HOH HOH . G 4 HOH A 21 321 19 HOH HOH . G 4 HOH A 22 322 33 HOH HOH . G 4 HOH A 23 323 64 HOH HOH . G 4 HOH A 24 324 41 HOH HOH . G 4 HOH A 25 325 27 HOH HOH . G 4 HOH A 26 326 35 HOH HOH . G 4 HOH A 27 327 44 HOH HOH . G 4 HOH A 28 328 18 HOH HOH . G 4 HOH A 29 329 15 HOH HOH . G 4 HOH A 30 330 12 HOH HOH . G 4 HOH A 31 331 67 HOH HOH . G 4 HOH A 32 332 50 HOH HOH . G 4 HOH A 33 333 3 HOH HOH . G 4 HOH A 34 334 4 HOH HOH . G 4 HOH A 35 335 36 HOH HOH . G 4 HOH A 36 336 9 HOH HOH . G 4 HOH A 37 337 2 HOH HOH . G 4 HOH A 38 338 8 HOH HOH . G 4 HOH A 39 339 40 HOH HOH . G 4 HOH A 40 340 39 HOH HOH . G 4 HOH A 41 341 63 HOH HOH . G 4 HOH A 42 342 23 HOH HOH . G 4 HOH A 43 343 26 HOH HOH . G 4 HOH A 44 344 17 HOH HOH . G 4 HOH A 45 345 59 HOH HOH . G 4 HOH A 46 346 47 HOH HOH . G 4 HOH A 47 347 28 HOH HOH . G 4 HOH A 48 348 72 HOH HOH . G 4 HOH A 49 349 49 HOH HOH . G 4 HOH A 50 350 46 HOH HOH . G 4 HOH A 51 351 20 HOH HOH . G 4 HOH A 52 352 51 HOH HOH . G 4 HOH A 53 353 66 HOH HOH . G 4 HOH A 54 354 24 HOH HOH . G 4 HOH A 55 355 16 HOH HOH . G 4 HOH A 56 356 34 HOH HOH . G 4 HOH A 57 357 52 HOH HOH . G 4 HOH A 58 358 86 HOH HOH . G 4 HOH A 59 359 58 HOH HOH . G 4 HOH A 60 360 55 HOH HOH . G 4 HOH A 61 361 81 HOH HOH . G 4 HOH A 62 362 45 HOH HOH . G 4 HOH A 63 363 42 HOH HOH . G 4 HOH A 64 364 65 HOH HOH . G 4 HOH A 65 365 21 HOH HOH . G 4 HOH A 66 366 70 HOH HOH . G 4 HOH A 67 367 38 HOH HOH . G 4 HOH A 68 368 53 HOH HOH . G 4 HOH A 69 369 62 HOH HOH . G 4 HOH A 70 370 22 HOH HOH . G 4 HOH A 71 371 78 HOH HOH . G 4 HOH A 72 372 87 HOH HOH . G 4 HOH A 73 373 85 HOH HOH . G 4 HOH A 74 374 60 HOH HOH . G 4 HOH A 75 375 68 HOH HOH . G 4 HOH A 76 376 74 HOH HOH . G 4 HOH A 77 377 84 HOH HOH . G 4 HOH A 78 378 88 HOH HOH . G 4 HOH A 79 379 79 HOH HOH . G 4 HOH A 80 380 76 HOH HOH . G 4 HOH A 81 381 77 HOH HOH . G 4 HOH A 82 382 56 HOH HOH . G 4 HOH A 83 383 37 HOH HOH . G 4 HOH A 84 384 73 HOH HOH . G 4 HOH A 85 385 69 HOH HOH . G 4 HOH A 86 386 29 HOH HOH . G 4 HOH A 87 387 57 HOH HOH . G 4 HOH A 88 388 61 HOH HOH . G 4 HOH A 89 389 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -4.153 -25.175 1.155 1 95.99 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 3 -3.619 -23.934 0.766 1 96.09 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 3 -3.702 -25.473 2.588 1 95.58 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 3 -2.861 -26.618 2.622 1 94.55 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 3 -2.977 -24.271 3.217 1 97.36 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 3 -3.655 -23.051 2.984 1 98.18 ? O3 GOL 205 A 1 HETATM 7 H H11 GOL . . . F 3 -3.801 -25.958 0.483 1 115.19 ? H11 GOL 205 A 1 HETATM 8 H H12 GOL . . . F 3 -5.241 -25.144 1.107 1 115.19 ? H12 GOL 205 A 1 HETATM 9 H HO1 GOL . . . F 3 -3.845 -23.76 -0.171 1 115.3 ? HO1 GOL 205 A 1 HETATM 10 H H2 GOL . . . F 3 -4.593 -25.672 3.182 1 114.69 ? H2 GOL 205 A 1 HETATM 11 H HO2 GOL . . . F 3 -2.035 -26.431 2.128 1 113.46 ? HO2 GOL 205 A 1 HETATM 12 H H31 GOL . . . F 3 -1.969 -24.205 2.807 1 116.83 ? H31 GOL 205 A 1 HETATM 13 H H32 GOL . . . F 3 -2.885 -24.43 4.292 1 116.83 ? H32 GOL 205 A 1 HETATM 14 H HO3 GOL . . . F 3 -4.35 -22.928 3.663 1 117.81 ? HO3 GOL 205 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #