data_5KAV
#
_model_server_result.job_id            zn7T4zOzhS9hG18RiiBivg 
_model_server_result.datetime_utc      '2024-10-15 02:17:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5KAV 
#
_exptl.entry_id    5KAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KAV 
_cell.length_a            73.686 
_cell.length_b            73.686 
_cell.length_c            68.423 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5KAV 
_atom_sites.fract_transf_matrix[1][1]    0.013571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014615 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 2 GOL A 1 202 2 GOL GOL . 
D 2 GOL A 1 203 3 GOL GOL . 
E 2 GOL A 1 204 4 GOL GOL . 
F 2 GOL A 1 205 5 GOL GOL . 
G 2 GOL A 1 206 6 GOL GOL . 
H 3 HOH A 1 301 57 HOH HOH . 
H 3 HOH A 2 302 92 HOH HOH . 
H 3 HOH A 3 303 29 HOH HOH . 
H 3 HOH A 4 304 76 HOH HOH . 
H 3 HOH A 5 305 89 HOH HOH . 
H 3 HOH A 6 306 46 HOH HOH . 
H 3 HOH A 7 307 32 HOH HOH . 
H 3 HOH A 8 308 9 HOH HOH . 
H 3 HOH A 9 309 78 HOH HOH . 
H 3 HOH A 10 310 47 HOH HOH . 
H 3 HOH A 11 311 10 HOH HOH . 
H 3 HOH A 12 312 33 HOH HOH . 
H 3 HOH A 13 313 37 HOH HOH . 
H 3 HOH A 14 314 59 HOH HOH . 
H 3 HOH A 15 315 72 HOH HOH . 
H 3 HOH A 16 316 8 HOH HOH . 
H 3 HOH A 17 317 94 HOH HOH . 
H 3 HOH A 18 318 34 HOH HOH . 
H 3 HOH A 19 319 5 HOH HOH . 
H 3 HOH A 20 320 43 HOH HOH . 
H 3 HOH A 21 321 26 HOH HOH . 
H 3 HOH A 22 322 12 HOH HOH . 
H 3 HOH A 23 323 98 HOH HOH . 
H 3 HOH A 24 324 13 HOH HOH . 
H 3 HOH A 25 325 6 HOH HOH . 
H 3 HOH A 26 326 3 HOH HOH . 
H 3 HOH A 27 327 2 HOH HOH . 
H 3 HOH A 28 328 11 HOH HOH . 
H 3 HOH A 29 329 4 HOH HOH . 
H 3 HOH A 30 330 99 HOH HOH . 
H 3 HOH A 31 331 25 HOH HOH . 
H 3 HOH A 32 332 71 HOH HOH . 
H 3 HOH A 33 333 36 HOH HOH . 
H 3 HOH A 34 334 75 HOH HOH . 
H 3 HOH A 35 335 20 HOH HOH . 
H 3 HOH A 36 336 39 HOH HOH . 
H 3 HOH A 37 337 18 HOH HOH . 
H 3 HOH A 38 338 23 HOH HOH . 
H 3 HOH A 39 339 31 HOH HOH . 
H 3 HOH A 40 340 16 HOH HOH . 
H 3 HOH A 41 341 85 HOH HOH . 
H 3 HOH A 42 342 44 HOH HOH . 
H 3 HOH A 43 343 90 HOH HOH . 
H 3 HOH A 44 344 1 HOH HOH . 
H 3 HOH A 45 345 74 HOH HOH . 
H 3 HOH A 46 346 93 HOH HOH . 
H 3 HOH A 47 347 30 HOH HOH . 
H 3 HOH A 48 348 56 HOH HOH . 
H 3 HOH A 49 349 48 HOH HOH . 
H 3 HOH A 50 350 52 HOH HOH . 
H 3 HOH A 51 351 91 HOH HOH . 
H 3 HOH A 52 352 41 HOH HOH . 
H 3 HOH A 53 353 54 HOH HOH . 
H 3 HOH A 54 354 7 HOH HOH . 
H 3 HOH A 55 355 38 HOH HOH . 
H 3 HOH A 56 356 97 HOH HOH . 
H 3 HOH A 57 357 22 HOH HOH . 
H 3 HOH A 58 358 24 HOH HOH . 
H 3 HOH A 59 359 49 HOH HOH . 
H 3 HOH A 60 360 28 HOH HOH . 
H 3 HOH A 61 361 21 HOH HOH . 
H 3 HOH A 62 362 51 HOH HOH . 
H 3 HOH A 63 363 58 HOH HOH . 
H 3 HOH A 64 364 64 HOH HOH . 
H 3 HOH A 65 365 14 HOH HOH . 
H 3 HOH A 66 366 65 HOH HOH . 
H 3 HOH A 67 367 77 HOH HOH . 
H 3 HOH A 68 368 96 HOH HOH . 
H 3 HOH A 69 369 82 HOH HOH . 
H 3 HOH A 70 370 53 HOH HOH . 
H 3 HOH A 71 371 67 HOH HOH . 
H 3 HOH A 72 372 19 HOH HOH . 
H 3 HOH A 73 373 50 HOH HOH . 
H 3 HOH A 74 374 17 HOH HOH . 
H 3 HOH A 75 375 27 HOH HOH . 
H 3 HOH A 76 376 63 HOH HOH . 
H 3 HOH A 77 377 83 HOH HOH . 
H 3 HOH A 78 378 68 HOH HOH . 
H 3 HOH A 79 379 55 HOH HOH . 
H 3 HOH A 80 380 15 HOH HOH . 
H 3 HOH A 81 381 86 HOH HOH . 
H 3 HOH A 82 382 62 HOH HOH . 
H 3 HOH A 83 383 45 HOH HOH . 
H 3 HOH A 84 384 88 HOH HOH . 
H 3 HOH A 85 385 73 HOH HOH . 
H 3 HOH A 86 386 40 HOH HOH . 
H 3 HOH A 87 387 80 HOH HOH . 
H 3 HOH A 88 388 42 HOH HOH . 
H 3 HOH A 89 389 61 HOH HOH . 
H 3 HOH A 90 390 81 HOH HOH . 
H 3 HOH A 91 391 69 HOH HOH . 
H 3 HOH A 92 392 60 HOH HOH . 
H 3 HOH A 93 393 70 HOH HOH . 
H 3 HOH A 94 394 84 HOH HOH . 
H 3 HOH A 95 395 95 HOH HOH . 
H 3 HOH A 96 396 66 HOH HOH . 
H 3 HOH A 97 397 79 HOH HOH . 
H 3 HOH A 98 398 87 HOH HOH . 
H 3 HOH A 99 399 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -27.435 29.625 5.086 1 74.23 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 2 -28.153 29.91 6.267 1 75.59 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 2 -27.652 28.196 4.616 1 77.99 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 2 -27.82 28.261 3.219 1 77.28 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 2 -26.487 27.274 4.984 1 80.87 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 2 -26.846 26.417 6.05 1 81.85 ? O3 GOL 203 A 1 
HETATM 7 H H11 GOL . . . D 2 -26.372 29.787 5.263 1 89.08 ? H11 GOL 203 A 1 
HETATM 8 H H12 GOL . . . D 2 -27.748 30.312 4.3 1 89.08 ? H12 GOL 203 A 1 
HETATM 9 H HO1 GOL . . . D 2 -27.934 30.816 6.571 1 90.71 ? HO1 GOL 203 A 1 
HETATM 10 H H2 GOL . . . D 2 -28.561 27.812 5.079 1 93.59 ? H2 GOL 203 A 1 
HETATM 11 H HO2 GOL . . . D 2 -26.997 28.596 2.806 1 92.74 ? HO2 GOL 203 A 1 
HETATM 12 H H31 GOL . . . D 2 -25.625 27.874 5.274 1 97.05 ? H31 GOL 203 A 1 
HETATM 13 H H32 GOL . . . D 2 -26.206 26.678 4.116 1 97.05 ? H32 GOL 203 A 1 
HETATM 14 H HO3 GOL . . . D 2 -26.098 25.815 6.25 1 98.23 ? HO3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           725 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#