data_5KAW # _model_server_result.job_id 39TrQs_OjU8lUz_rU0hdIA _model_server_result.datetime_utc '2024-10-15 00:27:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KAW # _exptl.entry_id 5KAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RHODAMINE 6G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAW _cell.length_a 73.724 _cell.length_b 73.724 _cell.length_c 65.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'RHODAMINE 6G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RHQ sing 338 n y C1 C6 RHQ doub 339 n y C1 O1 RHQ sing 340 n y C2 C3 RHQ sing 341 n y C2 C9 RHQ doub 342 n y C3 C4 RHQ doub 343 n y C3 H31 RHQ sing 344 n n C4 C5 RHQ sing 345 n y C4 C21 RHQ sing 346 n n C5 C6 RHQ sing 347 n y C5 N2 RHQ doub 348 z n C6 H61 RHQ sing 349 n n O1 C7 RHQ sing 350 n y C7 C8 RHQ doub 351 n y C7 C10 RHQ sing 352 n y C8 C9 RHQ sing 353 n y C8 C13 RHQ sing 354 n y C9 C14 RHQ sing 355 n y C10 C11 RHQ doub 356 n y C10 H101 RHQ sing 357 n n C11 C12 RHQ sing 358 n y C11 N1 RHQ sing 359 n n C12 C13 RHQ doub 360 n y C12 C20 RHQ sing 361 n n C13 H131 RHQ sing 362 n n N1 C22 RHQ sing 363 n n N1 HN11 RHQ sing 364 n n C14 C15 RHQ doub 365 n y C14 C19 RHQ sing 366 n y C15 C16 RHQ sing 367 n y C15 H151 RHQ sing 368 n n C16 C17 RHQ doub 369 n y C16 H161 RHQ sing 370 n n C17 C18 RHQ sing 371 n y C17 H171 RHQ sing 372 n n C18 C19 RHQ doub 373 n y C18 H181 RHQ sing 374 n n C19 C26 RHQ sing 375 n n C20 H201 RHQ sing 376 n n C20 H202 RHQ sing 377 n n C20 H203 RHQ sing 378 n n C21 H211 RHQ sing 379 n n C21 H212 RHQ sing 380 n n C21 H213 RHQ sing 381 n n C22 C23 RHQ sing 382 n n C22 H221 RHQ sing 383 n n C22 H222 RHQ sing 384 n n C23 H231 RHQ sing 385 n n C23 H232 RHQ sing 386 n n C23 H233 RHQ sing 387 n n N2 C24 RHQ sing 388 n n N2 HN21 RHQ sing 389 n n C24 C25 RHQ sing 390 n n C24 H241 RHQ sing 391 n n C24 H242 RHQ sing 392 n n C25 H251 RHQ sing 393 n n C25 H252 RHQ sing 394 n n C25 H253 RHQ sing 395 n n C26 O27 RHQ doub 396 n n C26 O2 RHQ sing 397 n n O2 C28 RHQ sing 398 n n C28 C29 RHQ sing 399 n n C28 H281 RHQ sing 400 n n C28 H282 RHQ sing 401 n n C29 H291 RHQ sing 402 n n C29 H292 RHQ sing 403 n n C29 H293 RHQ sing 404 n n # _atom_sites.entry_id 5KAW _atom_sites.fract_transf_matrix[1][1] 0.013564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHQ A 1 201 1 RHQ RHQ . C 3 P4P A 1 202 2 P4P P4P . D 4 GOL A 1 203 3 GOL GOL . E 4 GOL A 1 204 4 GOL GOL . F 4 GOL A 1 205 5 GOL GOL . G 4 GOL A 1 206 6 GOL GOL . H 4 GOL A 1 207 7 GOL GOL . I 4 GOL A 1 208 1 GOL GOL . J 5 HOH A 1 301 52 HOH HOH . J 5 HOH A 2 302 6 HOH HOH . J 5 HOH A 3 303 99 HOH HOH . J 5 HOH A 4 304 79 HOH HOH . J 5 HOH A 5 305 98 HOH HOH . J 5 HOH A 6 306 26 HOH HOH . J 5 HOH A 7 307 84 HOH HOH . J 5 HOH A 8 308 27 HOH HOH . J 5 HOH A 9 309 4 HOH HOH . J 5 HOH A 10 310 72 HOH HOH . J 5 HOH A 11 311 17 HOH HOH . J 5 HOH A 12 312 59 HOH HOH . J 5 HOH A 13 313 9 HOH HOH . J 5 HOH A 14 314 1 HOH HOH . J 5 HOH A 15 315 42 HOH HOH . J 5 HOH A 16 316 76 HOH HOH . J 5 HOH A 17 317 7 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 88 HOH HOH . J 5 HOH A 20 320 10 HOH HOH . J 5 HOH A 21 321 2 HOH HOH . J 5 HOH A 22 322 18 HOH HOH . J 5 HOH A 23 323 14 HOH HOH . J 5 HOH A 24 324 5 HOH HOH . J 5 HOH A 25 325 37 HOH HOH . J 5 HOH A 26 326 11 HOH HOH . J 5 HOH A 27 327 67 HOH HOH . J 5 HOH A 28 328 34 HOH HOH . J 5 HOH A 29 329 53 HOH HOH . J 5 HOH A 30 330 87 HOH HOH . J 5 HOH A 31 331 39 HOH HOH . J 5 HOH A 32 332 35 HOH HOH . J 5 HOH A 33 333 31 HOH HOH . J 5 HOH A 34 334 13 HOH HOH . J 5 HOH A 35 335 22 HOH HOH . J 5 HOH A 36 336 8 HOH HOH . J 5 HOH A 37 337 3 HOH HOH . J 5 HOH A 38 338 41 HOH HOH . J 5 HOH A 39 339 16 HOH HOH . J 5 HOH A 40 340 28 HOH HOH . J 5 HOH A 41 341 36 HOH HOH . J 5 HOH A 42 342 47 HOH HOH . J 5 HOH A 43 343 32 HOH HOH . J 5 HOH A 44 344 75 HOH HOH . J 5 HOH A 45 345 97 HOH HOH . J 5 HOH A 46 346 45 HOH HOH . J 5 HOH A 47 347 80 HOH HOH . J 5 HOH A 48 348 44 HOH HOH . J 5 HOH A 49 349 49 HOH HOH . J 5 HOH A 50 350 21 HOH HOH . J 5 HOH A 51 351 38 HOH HOH . J 5 HOH A 52 352 57 HOH HOH . J 5 HOH A 53 353 19 HOH HOH . J 5 HOH A 54 354 62 HOH HOH . J 5 HOH A 55 355 20 HOH HOH . J 5 HOH A 56 356 91 HOH HOH . J 5 HOH A 57 357 25 HOH HOH . J 5 HOH A 58 358 33 HOH HOH . J 5 HOH A 59 359 58 HOH HOH . J 5 HOH A 60 360 81 HOH HOH . J 5 HOH A 61 361 23 HOH HOH . J 5 HOH A 62 362 51 HOH HOH . J 5 HOH A 63 363 65 HOH HOH . J 5 HOH A 64 364 43 HOH HOH . J 5 HOH A 65 365 61 HOH HOH . J 5 HOH A 66 366 68 HOH HOH . J 5 HOH A 67 367 46 HOH HOH . J 5 HOH A 68 368 24 HOH HOH . J 5 HOH A 69 369 15 HOH HOH . J 5 HOH A 70 370 71 HOH HOH . J 5 HOH A 71 371 63 HOH HOH . J 5 HOH A 72 372 93 HOH HOH . J 5 HOH A 73 373 29 HOH HOH . J 5 HOH A 74 374 90 HOH HOH . J 5 HOH A 75 375 40 HOH HOH . J 5 HOH A 76 376 89 HOH HOH . J 5 HOH A 77 377 96 HOH HOH . J 5 HOH A 78 378 92 HOH HOH . J 5 HOH A 79 379 94 HOH HOH . J 5 HOH A 80 380 66 HOH HOH . J 5 HOH A 81 381 54 HOH HOH . J 5 HOH A 82 382 83 HOH HOH . J 5 HOH A 83 383 50 HOH HOH . J 5 HOH A 84 384 55 HOH HOH . J 5 HOH A 85 385 73 HOH HOH . J 5 HOH A 86 386 78 HOH HOH . J 5 HOH A 87 387 56 HOH HOH . J 5 HOH A 88 388 77 HOH HOH . J 5 HOH A 89 389 30 HOH HOH . J 5 HOH A 90 390 82 HOH HOH . J 5 HOH A 91 391 74 HOH HOH . J 5 HOH A 92 392 64 HOH HOH . J 5 HOH A 93 393 95 HOH HOH . J 5 HOH A 94 394 70 HOH HOH . J 5 HOH A 95 395 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RHQ . . . B 2 1.275 -12.339 -18.357 1 36.75 ? C1 RHQ 201 A 1 HETATM 2 C C2 RHQ . . . B 2 2.305 -11.42 -18.254 1 38.46 ? C2 RHQ 201 A 1 HETATM 3 C C3 RHQ . . . B 2 3.466 -11.586 -19.106 1 39.44 ? C3 RHQ 201 A 1 HETATM 4 C C4 RHQ . . . B 2 3.527 -12.642 -20.001 1 40.27 ? C4 RHQ 201 A 1 HETATM 5 C C5 RHQ . . . B 2 2.473 -13.578 -20.111 1 39.38 ? C5 RHQ 201 A 1 HETATM 6 C C6 RHQ . . . B 2 1.344 -13.429 -19.285 1 37.39 ? C6 RHQ 201 A 1 HETATM 7 O O1 RHQ . . . B 2 0.127 -12.2 -17.531 1 41.82 ? O1 RHQ 201 A 1 HETATM 8 C C7 RHQ . . . B 2 0.027 -11.141 -16.616 1 38.75 ? C7 RHQ 201 A 1 HETATM 9 C C8 RHQ . . . B 2 1.049 -10.214 -16.495 1 41.79 ? C8 RHQ 201 A 1 HETATM 10 C C9 RHQ . . . B 2 2.216 -10.348 -17.314 1 40.44 ? C9 RHQ 201 A 1 HETATM 11 C C10 RHQ . . . B 2 -1.155 -11.045 -15.804 1 40.12 ? C10 RHQ 201 A 1 HETATM 12 C C11 RHQ . . . B 2 -1.285 -10.038 -14.913 1 41.8 ? C11 RHQ 201 A 1 HETATM 13 C C12 RHQ . . . B 2 -0.238 -9.075 -14.783 1 63.63 ? C12 RHQ 201 A 1 HETATM 14 C C13 RHQ . . . B 2 0.911 -9.17 -15.568 1 39.67 ? C13 RHQ 201 A 1 HETATM 15 N N1 RHQ . . . B 2 -2.422 -9.887 -14.081 1 62.04 ? N1 RHQ 201 A 1 HETATM 16 C C14 RHQ . . . B 2 3.325 -9.623 -16.983 1 65.85 ? C14 RHQ 201 A 1 HETATM 17 C C15 RHQ . . . B 2 3.958 -9.763 -15.712 1 54.13 ? C15 RHQ 201 A 1 HETATM 18 C C16 RHQ . . . B 2 5.079 -9.016 -15.411 1 47.19 ? C16 RHQ 201 A 1 HETATM 19 C C17 RHQ . . . B 2 5.615 -8.11 -16.371 1 88.12 ? C17 RHQ 201 A 1 HETATM 20 C C18 RHQ . . . B 2 5.007 -7.968 -17.624 1 92.69 ? C18 RHQ 201 A 1 HETATM 21 C C19 RHQ . . . B 2 3.848 -8.734 -17.921 1 74.83 ? C19 RHQ 201 A 1 HETATM 22 C C20 RHQ . . . B 2 -0.259 -7.896 -13.814 1 81.67 ? C20 RHQ 201 A 1 HETATM 23 C C21 RHQ . . . B 2 4.858 -12.409 -20.643 1 40.61 ? C21 RHQ 201 A 1 HETATM 24 C C22 RHQ . . . B 2 -3.638 -10.604 -14.37 1 78.29 ? C22 RHQ 201 A 1 HETATM 25 C C23 RHQ . . . B 2 -4.296 -10.093 -15.685 1 41.82 ? C23 RHQ 201 A 1 HETATM 26 N N2 RHQ . . . B 2 2.581 -14.559 -20.971 1 57.23 ? N2 RHQ 201 A 1 HETATM 27 C C24 RHQ . . . B 2 1.522 -15.457 -21.225 1 75.21 ? C24 RHQ 201 A 1 HETATM 28 C C25 RHQ . . . B 2 1.966 -16.478 -22.306 1 40.29 ? C25 RHQ 201 A 1 HETATM 29 C C26 RHQ . . . B 2 3.365 -8.419 -19.354 1 46.78 ? C26 RHQ 201 A 1 HETATM 30 O O27 RHQ . . . B 2 2.126 -8.504 -19.608 1 36.92 ? O27 RHQ 201 A 1 HETATM 31 O O2 RHQ . . . B 2 4.32 -8.079 -20.37 1 48.04 ? O2 RHQ 201 A 1 HETATM 32 C C28 RHQ . . . B 2 3.797 -7.854 -21.667 1 56.16 ? C28 RHQ 201 A 1 HETATM 33 C C29 RHQ . . . B 2 3.418 -9.184 -22.324 1 37.52 ? C29 RHQ 201 A 1 HETATM 34 H H31 RHQ . . . B 2 4.171 -10.981 -19.054 1 47.33 ? H31 RHQ 201 A 1 HETATM 35 H H61 RHQ . . . B 2 0.562 -14.106 -19.35 1 44.87 ? H61 RHQ 201 A 1 HETATM 36 H H101 RHQ . . . B 2 -1.832 -11.673 -15.895 1 48.14 ? H101 RHQ 201 A 1 HETATM 37 H H131 RHQ . . . B 2 1.643 -8.49 -15.469 1 47.61 ? H131 RHQ 201 A 1 HETATM 38 H HN11 RHQ . . . B 2 -2.387 -9.374 -13.412 1 74.44 ? HN11 RHQ 201 A 1 HETATM 39 H H151 RHQ . . . B 2 3.607 -10.354 -15.078 1 64.96 ? H151 RHQ 201 A 1 HETATM 40 H H161 RHQ . . . B 2 5.529 -9.116 -14.491 1 56.63 ? H161 RHQ 201 A 1 HETATM 41 H H171 RHQ . . . B 2 6.439 -7.565 -16.145 1 105.74 ? H171 RHQ 201 A 1 HETATM 42 H H181 RHQ . . . B 2 5.365 -7.36 -18.271 1 111.23 ? H181 RHQ 201 A 1 HETATM 43 H H201 RHQ . . . B 2 -1.225 -7.855 -13.312 1 98 ? H201 RHQ 201 A 1 HETATM 44 H H202 RHQ . . . B 2 -0.125 -7.139 -14.266 1 98 ? H202 RHQ 201 A 1 HETATM 45 H H203 RHQ . . . B 2 0.474 -8.012 -13.122 1 98 ? H203 RHQ 201 A 1 HETATM 46 H H211 RHQ . . . B 2 5.079 -13.195 -21.274 1 48.73 ? H211 RHQ 201 A 1 HETATM 47 H H212 RHQ . . . B 2 4.832 -11.553 -21.169 1 48.73 ? H212 RHQ 201 A 1 HETATM 48 H H213 RHQ . . . B 2 5.523 -12.346 -19.973 1 48.73 ? H213 RHQ 201 A 1 HETATM 49 H H221 RHQ . . . B 2 -4.271 -10.481 -13.626 1 93.94 ? H221 RHQ 201 A 1 HETATM 50 H H222 RHQ . . . B 2 -3.431 -11.558 -14.466 1 93.94 ? H222 RHQ 201 A 1 HETATM 51 H H231 RHQ . . . B 2 -4.731 -9.168 -15.519 1 50.19 ? H231 RHQ 201 A 1 HETATM 52 H H232 RHQ . . . B 2 -5.006 -10.751 -15.978 1 50.19 ? H232 RHQ 201 A 1 HETATM 53 H H233 RHQ . . . B 2 -3.646 -10.019 -16.354 1 50.19 ? H233 RHQ 201 A 1 HETATM 54 H HN21 RHQ . . . B 2 3.338 -14.664 -21.404 1 68.68 ? HN21 RHQ 201 A 1 HETATM 55 H H241 RHQ . . . B 2 1.282 -15.957 -20.365 1 90.25 ? H241 RHQ 201 A 1 HETATM 56 H H242 RHQ . . . B 2 0.736 -14.955 -21.546 1 90.25 ? H242 RHQ 201 A 1 HETATM 57 H H251 RHQ . . . B 2 2.813 -16.904 -22.027 1 48.34 ? H251 RHQ 201 A 1 HETATM 58 H H252 RHQ . . . B 2 1.215 -17.224 -22.425 1 48.34 ? H252 RHQ 201 A 1 HETATM 59 H H253 RHQ . . . B 2 2.1 -16.02 -23.146 1 48.34 ? H253 RHQ 201 A 1 HETATM 60 H H281 RHQ . . . B 2 2.973 -7.259 -21.601 1 67.4 ? H281 RHQ 201 A 1 HETATM 61 H H282 RHQ . . . B 2 4.481 -7.404 -22.22 1 67.4 ? H282 RHQ 201 A 1 HETATM 62 H H291 RHQ . . . B 2 2.753 -9.596 -21.821 1 45.02 ? H291 RHQ 201 A 1 HETATM 63 H H292 RHQ . . . B 2 4.178 -9.746 -22.36 1 45.02 ? H292 RHQ 201 A 1 HETATM 64 H H293 RHQ . . . B 2 3.055 -9.004 -23.325 1 45.02 ? H293 RHQ 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 581 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 64 #