data_5KAW # _model_server_result.job_id mD7XIVQhk1ZxQhbIoDCbRQ _model_server_result.datetime_utc '2024-10-15 00:24:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5KAW # _exptl.entry_id 5KAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.389 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRAPHENYLPHOSPHONIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAW _cell.length_a 73.724 _cell.length_b 73.724 _cell.length_c 65.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H20 P 1' _chem_comp.formula_weight 339.389 _chem_comp.id P4P _chem_comp.mon_nstd_flag . _chem_comp.name TETRAPHENYLPHOSPHONIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P C1A P4P sing 250 n n P C1C P4P sing 251 n n P C1D P4P sing 252 n n P C1B P4P sing 253 n n C1A C2A P4P sing 254 n y C1A C6A P4P doub 255 n y C2A C3A P4P doub 256 n y C2A H2A P4P sing 257 n n C3A C4A P4P sing 258 n y C3A H3A P4P sing 259 n n C4A C5A P4P doub 260 n y C4A H4A P4P sing 261 n n C5A C6A P4P sing 262 n y C5A H5A P4P sing 263 n n C6A H6A P4P sing 264 n n C1C C6C P4P doub 265 n y C1C C2C P4P sing 266 n y C6C C5C P4P sing 267 n y C6C H6C P4P sing 268 n n C5C C4C P4P doub 269 n y C5C H5C P4P sing 270 n n C4C C3C P4P sing 271 n y C4C H4C P4P sing 272 n n C3C C2C P4P doub 273 n y C3C H3C P4P sing 274 n n C2C H2C P4P sing 275 n n C1D C6D P4P doub 276 n y C1D C2D P4P sing 277 n y C6D C5D P4P sing 278 n y C6D H6D P4P sing 279 n n C5D C4D P4P doub 280 n y C5D H5D P4P sing 281 n n C4D C3D P4P sing 282 n y C4D H4D P4P sing 283 n n C3D C2D P4P doub 284 n y C3D H3D P4P sing 285 n n C2D H2D P4P sing 286 n n C6B C5B P4P doub 287 n y C6B C1B P4P sing 288 n y C6B H6B P4P sing 289 n n C5B C4B P4P sing 290 n y C5B H5B P4P sing 291 n n C4B C3B P4P doub 292 n y C4B H4B P4P sing 293 n n C3B C2B P4P sing 294 n y C3B H3B P4P sing 295 n n C2B C1B P4P doub 296 n y C2B H2B P4P sing 297 n n # _atom_sites.entry_id 5KAW _atom_sites.fract_transf_matrix[1][1] 0.013564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHQ A 1 201 1 RHQ RHQ . C 3 P4P A 1 202 2 P4P P4P . D 4 GOL A 1 203 3 GOL GOL . E 4 GOL A 1 204 4 GOL GOL . F 4 GOL A 1 205 5 GOL GOL . G 4 GOL A 1 206 6 GOL GOL . H 4 GOL A 1 207 7 GOL GOL . I 4 GOL A 1 208 1 GOL GOL . J 5 HOH A 1 301 52 HOH HOH . J 5 HOH A 2 302 6 HOH HOH . J 5 HOH A 3 303 99 HOH HOH . J 5 HOH A 4 304 79 HOH HOH . J 5 HOH A 5 305 98 HOH HOH . J 5 HOH A 6 306 26 HOH HOH . J 5 HOH A 7 307 84 HOH HOH . J 5 HOH A 8 308 27 HOH HOH . J 5 HOH A 9 309 4 HOH HOH . J 5 HOH A 10 310 72 HOH HOH . J 5 HOH A 11 311 17 HOH HOH . J 5 HOH A 12 312 59 HOH HOH . J 5 HOH A 13 313 9 HOH HOH . J 5 HOH A 14 314 1 HOH HOH . J 5 HOH A 15 315 42 HOH HOH . J 5 HOH A 16 316 76 HOH HOH . J 5 HOH A 17 317 7 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 88 HOH HOH . J 5 HOH A 20 320 10 HOH HOH . J 5 HOH A 21 321 2 HOH HOH . J 5 HOH A 22 322 18 HOH HOH . J 5 HOH A 23 323 14 HOH HOH . J 5 HOH A 24 324 5 HOH HOH . J 5 HOH A 25 325 37 HOH HOH . J 5 HOH A 26 326 11 HOH HOH . J 5 HOH A 27 327 67 HOH HOH . J 5 HOH A 28 328 34 HOH HOH . J 5 HOH A 29 329 53 HOH HOH . J 5 HOH A 30 330 87 HOH HOH . J 5 HOH A 31 331 39 HOH HOH . J 5 HOH A 32 332 35 HOH HOH . J 5 HOH A 33 333 31 HOH HOH . J 5 HOH A 34 334 13 HOH HOH . J 5 HOH A 35 335 22 HOH HOH . J 5 HOH A 36 336 8 HOH HOH . J 5 HOH A 37 337 3 HOH HOH . J 5 HOH A 38 338 41 HOH HOH . J 5 HOH A 39 339 16 HOH HOH . J 5 HOH A 40 340 28 HOH HOH . J 5 HOH A 41 341 36 HOH HOH . J 5 HOH A 42 342 47 HOH HOH . J 5 HOH A 43 343 32 HOH HOH . J 5 HOH A 44 344 75 HOH HOH . J 5 HOH A 45 345 97 HOH HOH . J 5 HOH A 46 346 45 HOH HOH . J 5 HOH A 47 347 80 HOH HOH . J 5 HOH A 48 348 44 HOH HOH . J 5 HOH A 49 349 49 HOH HOH . J 5 HOH A 50 350 21 HOH HOH . J 5 HOH A 51 351 38 HOH HOH . J 5 HOH A 52 352 57 HOH HOH . J 5 HOH A 53 353 19 HOH HOH . J 5 HOH A 54 354 62 HOH HOH . J 5 HOH A 55 355 20 HOH HOH . J 5 HOH A 56 356 91 HOH HOH . J 5 HOH A 57 357 25 HOH HOH . J 5 HOH A 58 358 33 HOH HOH . J 5 HOH A 59 359 58 HOH HOH . J 5 HOH A 60 360 81 HOH HOH . J 5 HOH A 61 361 23 HOH HOH . J 5 HOH A 62 362 51 HOH HOH . J 5 HOH A 63 363 65 HOH HOH . J 5 HOH A 64 364 43 HOH HOH . J 5 HOH A 65 365 61 HOH HOH . J 5 HOH A 66 366 68 HOH HOH . J 5 HOH A 67 367 46 HOH HOH . J 5 HOH A 68 368 24 HOH HOH . J 5 HOH A 69 369 15 HOH HOH . J 5 HOH A 70 370 71 HOH HOH . J 5 HOH A 71 371 63 HOH HOH . J 5 HOH A 72 372 93 HOH HOH . J 5 HOH A 73 373 29 HOH HOH . J 5 HOH A 74 374 90 HOH HOH . J 5 HOH A 75 375 40 HOH HOH . J 5 HOH A 76 376 89 HOH HOH . J 5 HOH A 77 377 96 HOH HOH . J 5 HOH A 78 378 92 HOH HOH . J 5 HOH A 79 379 94 HOH HOH . J 5 HOH A 80 380 66 HOH HOH . J 5 HOH A 81 381 54 HOH HOH . J 5 HOH A 82 382 83 HOH HOH . J 5 HOH A 83 383 50 HOH HOH . J 5 HOH A 84 384 55 HOH HOH . J 5 HOH A 85 385 73 HOH HOH . J 5 HOH A 86 386 78 HOH HOH . J 5 HOH A 87 387 56 HOH HOH . J 5 HOH A 88 388 77 HOH HOH . J 5 HOH A 89 389 30 HOH HOH . J 5 HOH A 90 390 82 HOH HOH . J 5 HOH A 91 391 74 HOH HOH . J 5 HOH A 92 392 64 HOH HOH . J 5 HOH A 93 393 95 HOH HOH . J 5 HOH A 94 394 70 HOH HOH . J 5 HOH A 95 395 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P P4P . . . C 3 -16.224 -13.231 -8.086 1 110.84 ? P P4P 202 A 1 HETATM 2 C C1A P4P . . . C 3 -17.759 -12.296 -8.372 1 103.39 ? C1A P4P 202 A 1 HETATM 3 C C2A P4P . . . C 3 -18.984 -12.837 -8.01 1 89.81 ? C2A P4P 202 A 1 HETATM 4 C C3A P4P . . . C 3 -20.149 -12.119 -8.226 1 88.86 ? C3A P4P 202 A 1 HETATM 5 C C4A P4P . . . C 3 -20.095 -10.86 -8.806 1 90.64 ? C4A P4P 202 A 1 HETATM 6 C C5A P4P . . . C 3 -18.874 -10.316 -9.169 1 97.74 ? C5A P4P 202 A 1 HETATM 7 C C6A P4P . . . C 3 -17.707 -11.034 -8.951 1 105.55 ? C6A P4P 202 A 1 HETATM 8 C C1C P4P . . . C 3 -15.948 -13.351 -6.279 1 101.49 ? C1C P4P 202 A 1 HETATM 9 C C6C P4P . . . C 3 -16.961 -12.972 -5.405 1 75.76 ? C6C P4P 202 A 1 HETATM 10 C C5C P4P . . . C 3 -16.793 -13.054 -4.029 1 52.37 ? C5C P4P 202 A 1 HETATM 11 C C4C P4P . . . C 3 -15.603 -13.522 -3.506 1 52.42 ? C4C P4P 202 A 1 HETATM 12 C C3C P4P . . . C 3 -14.59 -13.904 -4.364 1 53.79 ? C3C P4P 202 A 1 HETATM 13 C C2C P4P . . . C 3 -14.755 -13.82 -5.743 1 79.21 ? C2C P4P 202 A 1 HETATM 14 C C1D P4P . . . C 3 -16.413 -14.878 -8.84 1 60.99 ? C1D P4P 202 A 1 HETATM 15 C C6D P4P . . . C 3 -15.672 -15.953 -8.389 1 69.3 ? C6D P4P 202 A 1 HETATM 16 C C5D P4P . . . C 3 -15.811 -17.209 -8.967 1 101.64 ? C5D P4P 202 A 1 HETATM 17 C C4D P4P . . . C 3 -16.701 -17.394 -10.011 1 106.2 ? C4D P4P 202 A 1 HETATM 18 C C3D P4P . . . C 3 -17.443 -16.318 -10.465 1 95.68 ? C3D P4P 202 A 1 HETATM 19 C C2D P4P . . . C 3 -17.299 -15.066 -9.886 1 62.47 ? C2D P4P 202 A 1 HETATM 20 C C6B P4P . . . C 3 -14.795 -12.343 -10.36 1 102.6 ? C6B P4P 202 A 1 HETATM 21 C C5B P4P . . . C 3 -13.769 -11.65 -10.985 1 85.35 ? C5B P4P 202 A 1 HETATM 22 C C4B P4P . . . C 3 -12.844 -10.956 -10.223 1 85.13 ? C4B P4P 202 A 1 HETATM 23 C C3B P4P . . . C 3 -12.946 -10.954 -8.838 1 94.97 ? C3B P4P 202 A 1 HETATM 24 C C2B P4P . . . C 3 -13.973 -11.648 -8.21 1 106.89 ? C2B P4P 202 A 1 HETATM 25 C C1B P4P . . . C 3 -14.898 -12.351 -8.972 1 118.46 ? C1B P4P 202 A 1 HETATM 26 H H2A P4P . . . C 3 -19.025 -13.723 -7.601 1 107.78 ? H2A P4P 202 A 1 HETATM 27 H H3A P4P . . . C 3 -21.01 -12.501 -7.973 1 106.63 ? H3A P4P 202 A 1 HETATM 28 H H4A P4P . . . C 3 -20.917 -10.357 -8.958 1 108.77 ? H4A P4P 202 A 1 HETATM 29 H H5A P4P . . . C 3 -18.834 -9.43 -9.576 1 117.29 ? H5A P4P 202 A 1 HETATM 30 H H6A P4P . . . C 3 -16.846 -10.651 -9.206 1 126.66 ? H6A P4P 202 A 1 HETATM 31 H H6C P4P . . . C 3 -17.806 -12.642 -5.766 1 90.91 ? H6C P4P 202 A 1 HETATM 32 H H5C P4P . . . C 3 -17.515 -12.781 -3.432 1 62.84 ? H5C P4P 202 A 1 HETATM 33 H H4C P4P . . . C 3 -15.479 -13.579 -2.54 1 62.9 ? H4C P4P 202 A 1 HETATM 34 H H3C P4P . . . C 3 -13.747 -14.232 -3.998 1 64.55 ? H3C P4P 202 A 1 HETATM 35 H H2C P4P . . . C 3 -14.031 -14.096 -6.337 1 95.06 ? H2C P4P 202 A 1 HETATM 36 H H6D P4P . . . C 3 -15.042 -15.829 -7.654 1 83.16 ? H6D P4P 202 A 1 HETATM 37 H H5D P4P . . . C 3 -15.284 -17.96 -8.637 1 121.97 ? H5D P4P 202 A 1 HETATM 38 H H4D P4P . . . C 3 -16.806 -18.274 -10.421 1 127.45 ? H4D P4P 202 A 1 HETATM 39 H H3D P4P . . . C 3 -18.072 -16.441 -11.201 1 114.82 ? H3D P4P 202 A 1 HETATM 40 H H2D P4P . . . C 3 -17.828 -14.314 -10.216 1 74.96 ? H2D P4P 202 A 1 HETATM 41 H H6B P4P . . . C 3 -15.446 -12.833 -10.897 1 123.12 ? H6B P4P 202 A 1 HETATM 42 H H5B P4P . . . C 3 -13.698 -11.653 -11.958 1 102.42 ? H5B P4P 202 A 1 HETATM 43 H H4B P4P . . . C 3 -12.121 -10.468 -10.66 1 102.15 ? H4B P4P 202 A 1 HETATM 44 H H3B P4P . . . C 3 -12.293 -10.465 -8.304 1 113.97 ? H3B P4P 202 A 1 HETATM 45 H H2B P4P . . . C 3 -14.042 -11.646 -7.236 1 128.26 ? H2B P4P 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #