data_5KAW # _model_server_result.job_id WgQJxl1Rg8YaQWk_3dRPiQ _model_server_result.datetime_utc '2024-11-24 03:23:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 5KAW # _exptl.entry_id 5KAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KAW _cell.length_a 73.724 _cell.length_b 73.724 _cell.length_c 65.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KAW _atom_sites.fract_transf_matrix[1][1] 0.013564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHQ A 1 201 1 RHQ RHQ . C 3 P4P A 1 202 2 P4P P4P . D 4 GOL A 1 203 3 GOL GOL . E 4 GOL A 1 204 4 GOL GOL . F 4 GOL A 1 205 5 GOL GOL . G 4 GOL A 1 206 6 GOL GOL . H 4 GOL A 1 207 7 GOL GOL . I 4 GOL A 1 208 1 GOL GOL . J 5 HOH A 1 301 52 HOH HOH . J 5 HOH A 2 302 6 HOH HOH . J 5 HOH A 3 303 99 HOH HOH . J 5 HOH A 4 304 79 HOH HOH . J 5 HOH A 5 305 98 HOH HOH . J 5 HOH A 6 306 26 HOH HOH . J 5 HOH A 7 307 84 HOH HOH . J 5 HOH A 8 308 27 HOH HOH . J 5 HOH A 9 309 4 HOH HOH . J 5 HOH A 10 310 72 HOH HOH . J 5 HOH A 11 311 17 HOH HOH . J 5 HOH A 12 312 59 HOH HOH . J 5 HOH A 13 313 9 HOH HOH . J 5 HOH A 14 314 1 HOH HOH . J 5 HOH A 15 315 42 HOH HOH . J 5 HOH A 16 316 76 HOH HOH . J 5 HOH A 17 317 7 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 88 HOH HOH . J 5 HOH A 20 320 10 HOH HOH . J 5 HOH A 21 321 2 HOH HOH . J 5 HOH A 22 322 18 HOH HOH . J 5 HOH A 23 323 14 HOH HOH . J 5 HOH A 24 324 5 HOH HOH . J 5 HOH A 25 325 37 HOH HOH . J 5 HOH A 26 326 11 HOH HOH . J 5 HOH A 27 327 67 HOH HOH . J 5 HOH A 28 328 34 HOH HOH . J 5 HOH A 29 329 53 HOH HOH . J 5 HOH A 30 330 87 HOH HOH . J 5 HOH A 31 331 39 HOH HOH . J 5 HOH A 32 332 35 HOH HOH . J 5 HOH A 33 333 31 HOH HOH . J 5 HOH A 34 334 13 HOH HOH . J 5 HOH A 35 335 22 HOH HOH . J 5 HOH A 36 336 8 HOH HOH . J 5 HOH A 37 337 3 HOH HOH . J 5 HOH A 38 338 41 HOH HOH . J 5 HOH A 39 339 16 HOH HOH . J 5 HOH A 40 340 28 HOH HOH . J 5 HOH A 41 341 36 HOH HOH . J 5 HOH A 42 342 47 HOH HOH . J 5 HOH A 43 343 32 HOH HOH . J 5 HOH A 44 344 75 HOH HOH . J 5 HOH A 45 345 97 HOH HOH . J 5 HOH A 46 346 45 HOH HOH . J 5 HOH A 47 347 80 HOH HOH . J 5 HOH A 48 348 44 HOH HOH . J 5 HOH A 49 349 49 HOH HOH . J 5 HOH A 50 350 21 HOH HOH . J 5 HOH A 51 351 38 HOH HOH . J 5 HOH A 52 352 57 HOH HOH . J 5 HOH A 53 353 19 HOH HOH . J 5 HOH A 54 354 62 HOH HOH . J 5 HOH A 55 355 20 HOH HOH . J 5 HOH A 56 356 91 HOH HOH . J 5 HOH A 57 357 25 HOH HOH . J 5 HOH A 58 358 33 HOH HOH . J 5 HOH A 59 359 58 HOH HOH . J 5 HOH A 60 360 81 HOH HOH . J 5 HOH A 61 361 23 HOH HOH . J 5 HOH A 62 362 51 HOH HOH . J 5 HOH A 63 363 65 HOH HOH . J 5 HOH A 64 364 43 HOH HOH . J 5 HOH A 65 365 61 HOH HOH . J 5 HOH A 66 366 68 HOH HOH . J 5 HOH A 67 367 46 HOH HOH . J 5 HOH A 68 368 24 HOH HOH . J 5 HOH A 69 369 15 HOH HOH . J 5 HOH A 70 370 71 HOH HOH . J 5 HOH A 71 371 63 HOH HOH . J 5 HOH A 72 372 93 HOH HOH . J 5 HOH A 73 373 29 HOH HOH . J 5 HOH A 74 374 90 HOH HOH . J 5 HOH A 75 375 40 HOH HOH . J 5 HOH A 76 376 89 HOH HOH . J 5 HOH A 77 377 96 HOH HOH . J 5 HOH A 78 378 92 HOH HOH . J 5 HOH A 79 379 94 HOH HOH . J 5 HOH A 80 380 66 HOH HOH . J 5 HOH A 81 381 54 HOH HOH . J 5 HOH A 82 382 83 HOH HOH . J 5 HOH A 83 383 50 HOH HOH . J 5 HOH A 84 384 55 HOH HOH . J 5 HOH A 85 385 73 HOH HOH . J 5 HOH A 86 386 78 HOH HOH . J 5 HOH A 87 387 56 HOH HOH . J 5 HOH A 88 388 77 HOH HOH . J 5 HOH A 89 389 30 HOH HOH . J 5 HOH A 90 390 82 HOH HOH . J 5 HOH A 91 391 74 HOH HOH . J 5 HOH A 92 392 64 HOH HOH . J 5 HOH A 93 393 95 HOH HOH . J 5 HOH A 94 394 70 HOH HOH . J 5 HOH A 95 395 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -3.918 -15.714 -29.037 1 59.58 ? C1 GOL 208 A 1 HETATM 2 O O1 GOL . . . I 4 -4.563 -16.896 -28.629 1 60.03 ? O1 GOL 208 A 1 HETATM 3 C C2 GOL . . . I 4 -4.373 -15.339 -30.437 1 58.63 ? C2 GOL 208 A 1 HETATM 4 O O2 GOL . . . I 4 -4.552 -13.946 -30.501 1 56.95 ? O2 GOL 208 A 1 HETATM 5 C C3 GOL . . . I 4 -3.344 -15.794 -31.467 1 70.79 ? C3 GOL 208 A 1 HETATM 6 O O3 GOL . . . I 4 -2.137 -15.076 -31.322 1 86.27 ? O3 GOL 208 A 1 HETATM 7 H H11 GOL . . . I 4 -4.155 -14.907 -28.344 1 71.5 ? H11 GOL 208 A 1 HETATM 8 H H12 GOL . . . I 4 -2.838 -15.863 -29.028 1 71.5 ? H12 GOL 208 A 1 HETATM 9 H HO1 GOL . . . I 4 -4.218 -17.171 -27.753 1 72.03 ? HO1 GOL 208 A 1 HETATM 10 H H2 GOL . . . I 4 -5.317 -15.843 -30.643 1 70.35 ? H2 GOL 208 A 1 HETATM 11 H HO2 GOL . . . I 4 -3.698 -13.498 -30.329 1 68.34 ? HO2 GOL 208 A 1 HETATM 12 H H31 GOL . . . I 4 -3.15 -16.859 -31.342 1 84.95 ? H31 GOL 208 A 1 HETATM 13 H H32 GOL . . . I 4 -3.741 -15.64 -32.47 1 84.95 ? H32 GOL 208 A 1 HETATM 14 H HO3 GOL . . . I 4 -2.148 -14.585 -30.474 1 103.53 ? HO3 GOL 208 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #