data_5KAX # _model_server_result.job_id J3BGGsK-k5vKXAcxE1XbPw _model_server_result.datetime_utc '2024-10-15 00:25:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5KAX # _exptl.entry_id 5KAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KAX _cell.length_a 71.958 _cell.length_b 71.958 _cell.length_c 146.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,J 1 1 B,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 9 A CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 B SG CYS 5 B CYS 5 1_555 B SG CYS 9 B CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KAX _atom_sites.fract_transf_matrix[1][1] 0.013897 _atom_sites.fract_transf_matrix[1][2] 0.008023 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RHQ A 1 201 1 RHQ RHQ . D 3 GOL A 1 202 2 GOL GOL . E 3 GOL A 1 203 3 GOL GOL . F 3 GOL A 1 204 1 GOL GOL . G 3 GOL A 1 205 1 GOL GOL . H 3 GOL A 1 206 1 GOL GOL . I 2 RHQ B 1 201 2 RHQ RHQ . J 4 HOH A 1 301 243 HOH HOH . J 4 HOH A 2 302 92 HOH HOH . J 4 HOH A 3 303 119 HOH HOH . J 4 HOH A 4 304 83 HOH HOH . J 4 HOH A 5 305 89 HOH HOH . J 4 HOH A 6 306 147 HOH HOH . J 4 HOH A 7 307 224 HOH HOH . J 4 HOH A 8 308 41 HOH HOH . J 4 HOH A 9 309 33 HOH HOH . J 4 HOH A 10 310 106 HOH HOH . J 4 HOH A 11 311 109 HOH HOH . J 4 HOH A 12 312 20 HOH HOH . J 4 HOH A 13 313 84 HOH HOH . J 4 HOH A 14 314 116 HOH HOH . J 4 HOH A 15 315 96 HOH HOH . J 4 HOH A 16 316 129 HOH HOH . J 4 HOH A 17 317 63 HOH HOH . J 4 HOH A 18 318 144 HOH HOH . J 4 HOH A 19 319 108 HOH HOH . J 4 HOH A 20 320 226 HOH HOH . J 4 HOH A 21 321 34 HOH HOH . J 4 HOH A 22 322 195 HOH HOH . J 4 HOH A 23 323 19 HOH HOH . J 4 HOH A 24 324 21 HOH HOH . J 4 HOH A 25 325 32 HOH HOH . J 4 HOH A 26 326 2 HOH HOH . J 4 HOH A 27 327 136 HOH HOH . J 4 HOH A 28 328 100 HOH HOH . J 4 HOH A 29 329 156 HOH HOH . J 4 HOH A 30 330 10 HOH HOH . J 4 HOH A 31 331 65 HOH HOH . J 4 HOH A 32 332 176 HOH HOH . J 4 HOH A 33 333 46 HOH HOH . J 4 HOH A 34 334 28 HOH HOH . J 4 HOH A 35 335 45 HOH HOH . J 4 HOH A 36 336 95 HOH HOH . J 4 HOH A 37 337 161 HOH HOH . J 4 HOH A 38 338 107 HOH HOH . J 4 HOH A 39 339 230 HOH HOH . J 4 HOH A 40 340 97 HOH HOH . J 4 HOH A 41 341 103 HOH HOH . J 4 HOH A 42 342 244 HOH HOH . J 4 HOH A 43 343 57 HOH HOH . J 4 HOH A 44 344 38 HOH HOH . J 4 HOH A 45 345 162 HOH HOH . J 4 HOH A 46 346 31 HOH HOH . J 4 HOH A 47 347 132 HOH HOH . J 4 HOH A 48 348 115 HOH HOH . J 4 HOH A 49 349 135 HOH HOH . J 4 HOH A 50 350 54 HOH HOH . J 4 HOH A 51 351 123 HOH HOH . J 4 HOH A 52 352 69 HOH HOH . J 4 HOH A 53 353 23 HOH HOH . J 4 HOH A 54 354 128 HOH HOH . J 4 HOH A 55 355 25 HOH HOH . J 4 HOH A 56 356 165 HOH HOH . J 4 HOH A 57 357 102 HOH HOH . J 4 HOH A 58 358 7 HOH HOH . J 4 HOH A 59 359 177 HOH HOH . J 4 HOH A 60 360 133 HOH HOH . J 4 HOH A 61 361 152 HOH HOH . J 4 HOH A 62 362 179 HOH HOH . J 4 HOH A 63 363 85 HOH HOH . J 4 HOH A 64 364 124 HOH HOH . J 4 HOH A 65 365 225 HOH HOH . J 4 HOH A 66 366 53 HOH HOH . J 4 HOH A 67 367 178 HOH HOH . J 4 HOH A 68 368 15 HOH HOH . J 4 HOH A 69 369 122 HOH HOH . J 4 HOH A 70 370 204 HOH HOH . J 4 HOH A 71 371 118 HOH HOH . J 4 HOH A 72 372 37 HOH HOH . J 4 HOH A 73 373 232 HOH HOH . J 4 HOH A 74 374 154 HOH HOH . J 4 HOH A 75 375 139 HOH HOH . J 4 HOH A 76 376 153 HOH HOH . J 4 HOH A 77 377 39 HOH HOH . J 4 HOH A 78 378 59 HOH HOH . J 4 HOH A 79 379 227 HOH HOH . J 4 HOH A 80 380 87 HOH HOH . J 4 HOH A 81 381 184 HOH HOH . J 4 HOH A 82 382 56 HOH HOH . J 4 HOH A 83 383 48 HOH HOH . J 4 HOH A 84 384 229 HOH HOH . J 4 HOH A 85 385 185 HOH HOH . J 4 HOH A 86 386 228 HOH HOH . J 4 HOH A 87 387 189 HOH HOH . J 4 HOH A 88 388 215 HOH HOH . J 4 HOH A 89 389 231 HOH HOH . J 4 HOH A 90 390 193 HOH HOH . J 4 HOH A 91 391 101 HOH HOH . J 4 HOH A 92 392 43 HOH HOH . J 4 HOH A 93 393 219 HOH HOH . J 4 HOH A 94 394 190 HOH HOH . J 4 HOH A 95 395 174 HOH HOH . J 4 HOH A 96 396 68 HOH HOH . J 4 HOH A 97 397 216 HOH HOH . J 4 HOH A 98 398 192 HOH HOH . J 4 HOH A 99 399 182 HOH HOH . J 4 HOH A 100 400 170 HOH HOH . J 4 HOH A 101 401 245 HOH HOH . J 4 HOH A 102 402 246 HOH HOH . K 4 HOH B 1 301 205 HOH HOH . K 4 HOH B 2 302 211 HOH HOH . K 4 HOH B 3 303 173 HOH HOH . K 4 HOH B 4 304 17 HOH HOH . K 4 HOH B 5 305 52 HOH HOH . K 4 HOH B 6 306 16 HOH HOH . K 4 HOH B 7 307 218 HOH HOH . K 4 HOH B 8 308 22 HOH HOH . K 4 HOH B 9 309 88 HOH HOH . K 4 HOH B 10 310 142 HOH HOH . K 4 HOH B 11 311 209 HOH HOH . K 4 HOH B 12 312 8 HOH HOH . K 4 HOH B 13 313 150 HOH HOH . K 4 HOH B 14 314 78 HOH HOH . K 4 HOH B 15 315 163 HOH HOH . K 4 HOH B 16 316 1 HOH HOH . K 4 HOH B 17 317 240 HOH HOH . K 4 HOH B 18 318 5 HOH HOH . K 4 HOH B 19 319 186 HOH HOH . K 4 HOH B 20 320 110 HOH HOH . K 4 HOH B 21 321 12 HOH HOH . K 4 HOH B 22 322 36 HOH HOH . K 4 HOH B 23 323 27 HOH HOH . K 4 HOH B 24 324 72 HOH HOH . K 4 HOH B 25 325 241 HOH HOH . K 4 HOH B 26 326 4 HOH HOH . K 4 HOH B 27 327 86 HOH HOH . K 4 HOH B 28 328 134 HOH HOH . K 4 HOH B 29 329 26 HOH HOH . K 4 HOH B 30 330 237 HOH HOH . K 4 HOH B 31 331 24 HOH HOH . K 4 HOH B 32 332 140 HOH HOH . K 4 HOH B 33 333 77 HOH HOH . K 4 HOH B 34 334 75 HOH HOH . K 4 HOH B 35 335 148 HOH HOH . K 4 HOH B 36 336 6 HOH HOH . K 4 HOH B 37 337 11 HOH HOH . K 4 HOH B 38 338 94 HOH HOH . K 4 HOH B 39 339 105 HOH HOH . K 4 HOH B 40 340 3 HOH HOH . K 4 HOH B 41 341 212 HOH HOH . K 4 HOH B 42 342 60 HOH HOH . K 4 HOH B 43 343 130 HOH HOH . K 4 HOH B 44 344 30 HOH HOH . K 4 HOH B 45 345 18 HOH HOH . K 4 HOH B 46 346 82 HOH HOH . K 4 HOH B 47 347 13 HOH HOH . K 4 HOH B 48 348 80 HOH HOH . K 4 HOH B 49 349 81 HOH HOH . K 4 HOH B 50 350 42 HOH HOH . K 4 HOH B 51 351 131 HOH HOH . K 4 HOH B 52 352 93 HOH HOH . K 4 HOH B 53 353 35 HOH HOH . K 4 HOH B 54 354 44 HOH HOH . K 4 HOH B 55 355 9 HOH HOH . K 4 HOH B 56 356 40 HOH HOH . K 4 HOH B 57 357 62 HOH HOH . K 4 HOH B 58 358 208 HOH HOH . K 4 HOH B 59 359 238 HOH HOH . K 4 HOH B 60 360 143 HOH HOH . K 4 HOH B 61 361 210 HOH HOH . K 4 HOH B 62 362 61 HOH HOH . K 4 HOH B 63 363 49 HOH HOH . K 4 HOH B 64 364 146 HOH HOH . K 4 HOH B 65 365 127 HOH HOH . K 4 HOH B 66 366 71 HOH HOH . K 4 HOH B 67 367 145 HOH HOH . K 4 HOH B 68 368 181 HOH HOH . K 4 HOH B 69 369 50 HOH HOH . K 4 HOH B 70 370 51 HOH HOH . K 4 HOH B 71 371 137 HOH HOH . K 4 HOH B 72 372 73 HOH HOH . K 4 HOH B 73 373 14 HOH HOH . K 4 HOH B 74 374 113 HOH HOH . K 4 HOH B 75 375 236 HOH HOH . K 4 HOH B 76 376 76 HOH HOH . K 4 HOH B 77 377 126 HOH HOH . K 4 HOH B 78 378 214 HOH HOH . K 4 HOH B 79 379 58 HOH HOH . K 4 HOH B 80 380 117 HOH HOH . K 4 HOH B 81 381 64 HOH HOH . K 4 HOH B 82 382 67 HOH HOH . K 4 HOH B 83 383 91 HOH HOH . K 4 HOH B 84 384 171 HOH HOH . K 4 HOH B 85 385 206 HOH HOH . K 4 HOH B 86 386 114 HOH HOH . K 4 HOH B 87 387 70 HOH HOH . K 4 HOH B 88 388 74 HOH HOH . K 4 HOH B 89 389 47 HOH HOH . K 4 HOH B 90 390 79 HOH HOH . K 4 HOH B 91 391 167 HOH HOH . K 4 HOH B 92 392 235 HOH HOH . K 4 HOH B 93 393 187 HOH HOH . K 4 HOH B 94 394 234 HOH HOH . K 4 HOH B 95 395 160 HOH HOH . K 4 HOH B 96 396 66 HOH HOH . K 4 HOH B 97 397 164 HOH HOH . K 4 HOH B 98 398 112 HOH HOH . K 4 HOH B 99 399 125 HOH HOH . K 4 HOH B 100 400 239 HOH HOH . K 4 HOH B 101 401 194 HOH HOH . K 4 HOH B 102 402 149 HOH HOH . K 4 HOH B 103 403 201 HOH HOH . K 4 HOH B 104 404 138 HOH HOH . K 4 HOH B 105 405 141 HOH HOH . K 4 HOH B 106 406 203 HOH HOH . K 4 HOH B 107 407 242 HOH HOH . K 4 HOH B 108 408 120 HOH HOH . K 4 HOH B 109 409 191 HOH HOH . K 4 HOH B 110 410 172 HOH HOH . K 4 HOH B 111 411 104 HOH HOH . K 4 HOH B 112 412 199 HOH HOH . K 4 HOH B 113 413 29 HOH HOH . K 4 HOH B 114 414 111 HOH HOH . K 4 HOH B 115 415 175 HOH HOH . K 4 HOH B 116 416 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -14.021 29.128 4.129 1 38.1 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 -14.664 28.153 4.902 1 52.39 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 -15.01 29.812 3.222 1 48.11 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 -15.747 30.79 3.941 1 60.51 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 -14.273 30.527 2.125 1 49.61 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 -13.8 29.604 1.167 1 45.91 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . D 3 -13.562 29.865 4.786 1 45.72 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . D 3 -13.238 28.661 3.535 1 45.72 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . D 3 -14.074 27.885 5.613 0 62.87 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . D 3 -15.682 29.062 2.788 1 57.74 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . D 3 -15.14 31.331 4.456 0 72.61 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . D 3 -14.939 31.246 1.65 1 59.53 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . D 3 -13.432 31.074 2.548 1 59.53 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . D 3 -12.914 29.859 0.891 1 55.1 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 663 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #