data_5KB2 # _model_server_result.job_id nb9THV3GBI5YeaAAEdDByw _model_server_result.datetime_utc '2024-10-28 02:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5KB2 # _exptl.entry_id 5KB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KB2 _cell.length_a 37.853 _cell.length_b 37.853 _cell.length_c 141.072 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 18.9265 -32.78166 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 37.853 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 3 A GLU 3 1_555 B ZN ZN . A ZN 101 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 A OE2 GLU 3 A GLU 3 1_555 B ZN ZN . A ZN 101 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A SG CYS 16 A CYS 16 1_555 C ZN ZN . A ZN 102 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A SG CYS 16 A CYS 16 1_555 C ZN ZN . A ZN 102 2_545 ? A ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc6 A OE2 GLU 34 A GLU 34 1_555 B ZN ZN . A ZN 101 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 A OE2 GLU 34 A GLU 34 1_555 B ZN ZN . A ZN 101 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc8 A NE2 HIS 35 A HIS 35 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 C ZN ZN . A ZN 102 1_555 D O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc10 C ZN ZN . A ZN 102 1_555 D O HOH . A HOH 230 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KB2 _atom_sites.fract_transf_matrix[1][1] 0.026418 _atom_sites.fract_transf_matrix[1][2] 0.015252 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 2 ZN A 1 102 2 ZN ZN . D 3 HOH A 1 201 29 HOH HOH . D 3 HOH A 2 202 13 HOH HOH . D 3 HOH A 3 203 42 HOH HOH . D 3 HOH A 4 204 4 HOH HOH . D 3 HOH A 5 205 23 HOH HOH . D 3 HOH A 6 206 21 HOH HOH . D 3 HOH A 7 207 24 HOH HOH . D 3 HOH A 8 208 40 HOH HOH . D 3 HOH A 9 209 37 HOH HOH . D 3 HOH A 10 210 11 HOH HOH . D 3 HOH A 11 211 2 HOH HOH . D 3 HOH A 12 212 28 HOH HOH . D 3 HOH A 13 213 31 HOH HOH . D 3 HOH A 14 214 17 HOH HOH . D 3 HOH A 15 215 1 HOH HOH . D 3 HOH A 16 216 5 HOH HOH . D 3 HOH A 17 217 32 HOH HOH . D 3 HOH A 18 218 12 HOH HOH . D 3 HOH A 19 219 9 HOH HOH . D 3 HOH A 20 220 7 HOH HOH . D 3 HOH A 21 221 35 HOH HOH . D 3 HOH A 22 222 19 HOH HOH . D 3 HOH A 23 223 18 HOH HOH . D 3 HOH A 24 224 22 HOH HOH . D 3 HOH A 25 225 6 HOH HOH . D 3 HOH A 26 226 14 HOH HOH . D 3 HOH A 27 227 41 HOH HOH . D 3 HOH A 28 228 30 HOH HOH . D 3 HOH A 29 229 8 HOH HOH . D 3 HOH A 30 230 20 HOH HOH . D 3 HOH A 31 231 15 HOH HOH . D 3 HOH A 32 232 26 HOH HOH . D 3 HOH A 33 233 10 HOH HOH . D 3 HOH A 34 234 3 HOH HOH . D 3 HOH A 35 235 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.8 _atom_site.Cartn_y -11.704 _atom_site.Cartn_z -22.157 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.69 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #