data_5KBE # _model_server_result.job_id R8tYWWTl_j2FOOp3zsCelA _model_server_result.datetime_utc '2024-11-22 14:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5KBE # _exptl.entry_id 5KBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBE _cell.length_a 45.178 _cell.length_b 93.064 _cell.length_c 119.867 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 155 A CYS 155 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A OE2 GLU 178 A GLU 178 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A SG CYS 181 A CYS 181 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A SG CYS 189 A CYS 189 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 B SG CYS 155 B CYS 155 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 B OE2 GLU 178 B GLU 178 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc7 B SG CYS 181 B CYS 181 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 B SG CYS 189 B CYS 189 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 173 n y C1 C6 IPH sing 174 n y C1 O1 IPH sing 175 n n C2 C3 IPH sing 176 n y C2 H2 IPH sing 177 n n C3 C4 IPH doub 178 n y C3 H3 IPH sing 179 n n C4 C5 IPH sing 180 n y C4 H4 IPH sing 181 n n C5 C6 IPH doub 182 n y C5 H5 IPH sing 183 n n C6 H6 IPH sing 184 n n O1 HO1 IPH sing 185 n n # _atom_sites.entry_id 5KBE _atom_sites.fract_transf_matrix[1][1] 0.022135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 IPH A 1 602 701 IPH IPH . E 2 ZN B 1 301 602 ZN ZN . F 3 IPH B 1 302 702 IPH IPH . G 4 HOH A 1 701 2017 HOH HOH . G 4 HOH A 2 702 2014 HOH HOH . G 4 HOH A 3 703 2007 HOH HOH . G 4 HOH A 4 704 2010 HOH HOH . G 4 HOH A 5 705 2011 HOH HOH . G 4 HOH A 6 706 2008 HOH HOH . G 4 HOH A 7 707 2015 HOH HOH . G 4 HOH A 8 708 2004 HOH HOH . G 4 HOH A 9 709 2003 HOH HOH . G 4 HOH A 10 710 2005 HOH HOH . G 4 HOH A 11 711 2019 HOH HOH . G 4 HOH A 12 712 2012 HOH HOH . G 4 HOH A 13 713 2010 HOH HOH . G 4 HOH A 14 714 2009 HOH HOH . G 4 HOH A 15 715 2016 HOH HOH . G 4 HOH A 16 716 2006 HOH HOH . G 4 HOH A 17 717 2018 HOH HOH . H 4 HOH B 1 401 2002 HOH HOH . H 4 HOH B 2 402 2001 HOH HOH . H 4 HOH B 3 403 2002 HOH HOH . H 4 HOH B 4 404 2009 HOH HOH . H 4 HOH B 5 405 2008 HOH HOH . H 4 HOH B 6 406 2003 HOH HOH . H 4 HOH B 7 407 2007 HOH HOH . H 4 HOH B 8 408 2013 HOH HOH . H 4 HOH B 9 409 2006 HOH HOH . H 4 HOH B 10 410 2012 HOH HOH . H 4 HOH B 11 411 2005 HOH HOH . H 4 HOH B 12 412 2001 HOH HOH . H 4 HOH B 13 413 2004 HOH HOH . H 4 HOH B 14 414 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . D 3 28.894 2.469 -12.956 1 24.53 ? C1 IPH 602 A 1 HETATM 2 C C2 IPH . . . D 3 29.016 2.772 -14.317 1 22.67 ? C2 IPH 602 A 1 HETATM 3 C C3 IPH . . . D 3 30.238 3.072 -14.853 1 25.18 ? C3 IPH 602 A 1 HETATM 4 C C4 IPH . . . D 3 31.4 3.053 -14.053 1 25.04 ? C4 IPH 602 A 1 HETATM 5 C C5 IPH . . . D 3 31.307 2.767 -12.699 1 23.94 ? C5 IPH 602 A 1 HETATM 6 C C6 IPH . . . D 3 30.052 2.468 -12.163 1 24.74 ? C6 IPH 602 A 1 HETATM 7 O O1 IPH . . . D 3 27.64 2.211 -12.403 1 22.06 ? O1 IPH 602 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #