data_5KBG # _model_server_result.job_id 6HkRmhcPL5asyRbTyMTDPw _model_server_result.datetime_utc '2024-11-22 07:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5KBG # _exptl.entry_id 5KBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.138 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description o-cresol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBG _cell.length_a 45.266 _cell.length_b 92.945 _cell.length_c 119.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 155 A CYS 155 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A OE2 GLU 178 A GLU 178 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 A SG CYS 181 A CYS 181 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A SG CYS 189 A CYS 189 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 B SG CYS 155 B CYS 155 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 B OE2 GLU 178 B GLU 178 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 B SG CYS 181 B CYS 181 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc8 B SG CYS 189 B CYS 189 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C7 H8 O' _chem_comp.formula_weight 108.138 _chem_comp.id JZ0 _chem_comp.mon_nstd_flag . _chem_comp.name o-cresol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ortho-cresol,2-methylphenol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 JZ0 doub 173 n y C9 C14 JZ0 sing 174 n y C10 C11 JZ0 sing 175 n y C11 C12 JZ0 doub 176 n y C12 C13 JZ0 sing 177 n y C13 C14 JZ0 doub 178 n y C13 OAB JZ0 sing 179 n n C14 C15 JZ0 sing 180 n n C9 H9 JZ0 sing 181 n n C10 H10 JZ0 sing 182 n n C11 H11 JZ0 sing 183 n n C12 H12 JZ0 sing 184 n n C15 H15 JZ0 sing 185 n n C15 H15A JZ0 sing 186 n n C15 H15B JZ0 sing 187 n n OAB HOAB JZ0 sing 188 n n # _atom_sites.entry_id 5KBG _atom_sites.fract_transf_matrix[1][1] 0.022092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 JZ0 A 1 602 701 JZ0 JZ0 . E 2 ZN B 1 301 602 ZN ZN . F 3 JZ0 B 1 302 702 JZ0 JZ0 . G 4 HOH A 1 701 2007 HOH HOH . G 4 HOH A 2 702 2003 HOH HOH . G 4 HOH A 3 703 2008 HOH HOH . G 4 HOH A 4 704 2002 HOH HOH . G 4 HOH A 5 705 2006 HOH HOH . G 4 HOH A 6 706 2004 HOH HOH . G 4 HOH A 7 707 2009 HOH HOH . G 4 HOH A 8 708 2010 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2005 HOH HOH . H 4 HOH B 3 2003 2002 HOH HOH . H 4 HOH B 4 2004 2001 HOH HOH . H 4 HOH B 5 2005 2004 HOH HOH . H 4 HOH B 6 2006 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 JZ0 . . . D 3 31.284 2.82 -13.068 1 33.87 ? C9 JZ0 602 A 1 HETATM 2 C C10 JZ0 . . . D 3 31.203 3.195 -14.399 1 36.21 ? C10 JZ0 602 A 1 HETATM 3 C C11 JZ0 . . . D 3 29.975 3.197 -15.038 1 36.33 ? C11 JZ0 602 A 1 HETATM 4 C C12 JZ0 . . . D 3 28.8 2.831 -14.377 1 35.61 ? C12 JZ0 602 A 1 HETATM 5 C C13 JZ0 . . . D 3 28.841 2.463 -13.047 1 32.65 ? C13 JZ0 602 A 1 HETATM 6 C C14 JZ0 . . . D 3 30.142 2.472 -12.401 1 32.34 ? C14 JZ0 602 A 1 HETATM 7 C C15 JZ0 . . . D 3 30.214 2.06 -10.979 1 38.66 ? C15 JZ0 602 A 1 HETATM 8 O OAB JZ0 . . . D 3 27.724 2.098 -12.354 1 31.16 ? OAB JZ0 602 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #