data_5KBH # _model_server_result.job_id N2duJ8hS1QIcGIWJGCEErw _model_server_result.datetime_utc '2024-11-17 07:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5KBH # _exptl.entry_id 5KBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.556 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-CHLOROPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBH _cell.length_a 45.609 _cell.length_b 93.373 _cell.length_c 120.309 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 155 A CYS 155 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OE2 GLU 178 A GLU 178 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A SG CYS 181 A CYS 181 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A SG CYS 189 A CYS 189 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc5 B SG CYS 155 B CYS 155 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 B OE2 GLU 178 B GLU 178 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 B SG CYS 181 B CYS 181 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc8 B SG CYS 189 B CYS 189 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'C6 H5 Cl O' _chem_comp.formula_weight 128.556 _chem_comp.id 3CH _chem_comp.mon_nstd_flag . _chem_comp.name 3-CHLOROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 3CH doub 1 n y C4 C3 3CH sing 2 n y C4 HC4 3CH sing 3 n n C5 C6 3CH sing 4 n y C5 HC5 3CH sing 5 n n C3 C2 3CH doub 6 n y C3 CL 3CH sing 7 n n C6 C1 3CH doub 8 n y C6 HC6 3CH sing 9 n n C2 C1 3CH sing 10 n y C2 HC2 3CH sing 11 n n C1 OH 3CH sing 12 n n OH HO 3CH sing 13 n n # _atom_sites.entry_id 5KBH _atom_sites.fract_transf_matrix[1][1] 0.021925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 3CH A 1 602 701 3CH 3CH . E 2 ZN B 1 301 602 ZN ZN . F 3 3CH B 1 302 702 3CH 3CH . G 4 HOH A 1 701 2008 HOH HOH . G 4 HOH A 2 702 2005 HOH HOH . G 4 HOH A 3 703 2014 HOH HOH . G 4 HOH A 4 704 2016 HOH HOH . G 4 HOH A 5 705 2015 HOH HOH . G 4 HOH A 6 706 2007 HOH HOH . G 4 HOH A 7 707 2012 HOH HOH . G 4 HOH A 8 708 2010 HOH HOH . G 4 HOH A 9 709 2006 HOH HOH . G 4 HOH A 10 710 2013 HOH HOH . G 4 HOH A 11 711 2002 HOH HOH . G 4 HOH A 12 712 2017 HOH HOH . G 4 HOH A 13 713 2004 HOH HOH . H 4 HOH B 1 401 2004 HOH HOH . H 4 HOH B 2 402 2001 HOH HOH . H 4 HOH B 3 403 2003 HOH HOH . H 4 HOH B 4 404 2011 HOH HOH . H 4 HOH B 5 405 2002 HOH HOH . H 4 HOH B 6 406 2009 HOH HOH . H 4 HOH B 7 407 2001 HOH HOH . H 4 HOH B 8 408 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3CH . . . D 3 31.35 3.217 -14.674 1 51.17 ? C4 3CH 602 A 1 HETATM 2 C C5 3CH . . . D 3 30.117 3.31 -15.281 1 48.09 ? C5 3CH 602 A 1 HETATM 3 C C3 3CH . . . D 3 31.399 2.795 -13.36 1 47.49 ? C3 3CH 602 A 1 HETATM 4 C C6 3CH . . . D 3 28.993 2.973 -14.534 1 46.96 ? C6 3CH 602 A 1 HETATM 5 C C2 3CH . . . D 3 30.322 2.469 -12.611 1 43.88 ? C2 3CH 602 A 1 HETATM 6 C C1 3CH . . . D 3 29.099 2.567 -13.207 1 43.41 ? C1 3CH 602 A 1 HETATM 7 O OH 3CH . . . D 3 27.993 2.243 -12.496 1 39.68 ? OH 3CH 602 A 1 HETATM 8 CL CL 3CH . . . D 3 32.951 2.669 -12.596 0.85 78.23 ? CL 3CH 602 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #