data_5KBN # _model_server_result.job_id JM163orNWmO5PzKXaKSmfw _model_server_result.datetime_utc '2024-12-26 12:18:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 5KBN # _exptl.entry_id 5KBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.998 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLUORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBN _cell.length_a 87.655 _cell.length_b 87.655 _cell.length_c 143.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,M,P 1 1 B,C,J,K,L,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 75 A GLY 75 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A O SER 78 A SER 78 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc3 E NA NA . A NA 201 1_555 B O GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 E NA NA . A NA 201 1_555 B O SER 78 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'F -1' _chem_comp.formula_weight 18.998 _chem_comp.id F _chem_comp.mon_nstd_flag . _chem_comp.name 'FLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KBN _atom_sites.fract_transf_matrix[1][1] 0.011408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 201 1 NA NA . F 4 DMU A 1 202 2 DMU DMU . G 4 DMU A 1 203 3 DMU DMU . H 4 DMU A 1 204 5 DMU DMU . I 5 F A 1 205 1 F F . J 4 DMU B 1 201 1 DMU DMU . K 5 F B 1 202 2 F F . L 4 DMU C 1 101 4 DMU DMU . M 6 HOH A 1 301 27 HOH HOH . M 6 HOH A 2 302 24 HOH HOH . M 6 HOH A 3 303 28 HOH HOH . M 6 HOH A 4 304 2 HOH HOH . M 6 HOH A 5 305 18 HOH HOH . N 6 HOH B 1 301 8 HOH HOH . N 6 HOH B 2 302 25 HOH HOH . N 6 HOH B 3 303 29 HOH HOH . N 6 HOH B 4 304 26 HOH HOH . N 6 HOH B 5 305 10 HOH HOH . N 6 HOH B 6 306 33 HOH HOH . N 6 HOH B 7 307 23 HOH HOH . O 6 HOH C 1 201 19 HOH HOH . O 6 HOH C 2 202 14 HOH HOH . O 6 HOH C 3 203 7 HOH HOH . O 6 HOH C 4 204 17 HOH HOH . O 6 HOH C 5 205 11 HOH HOH . O 6 HOH C 6 206 21 HOH HOH . O 6 HOH C 7 207 12 HOH HOH . O 6 HOH C 8 208 16 HOH HOH . O 6 HOH C 9 209 4 HOH HOH . O 6 HOH C 10 210 22 HOH HOH . P 6 HOH D 1 101 20 HOH HOH . P 6 HOH D 2 102 1 HOH HOH . P 6 HOH D 3 103 32 HOH HOH . P 6 HOH D 4 104 3 HOH HOH . P 6 HOH D 5 105 9 HOH HOH . P 6 HOH D 6 106 30 HOH HOH . P 6 HOH D 7 107 13 HOH HOH . P 6 HOH D 8 108 6 HOH HOH . P 6 HOH D 9 109 15 HOH HOH . P 6 HOH D 10 110 5 HOH HOH . P 6 HOH D 11 111 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol F _atom_site.label_atom_id F _atom_site.label_comp_id F _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x 39.134 _atom_site.Cartn_y -6.675 _atom_site.Cartn_z 14.047 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id F _atom_site.auth_comp_id F _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #