data_5KBN # _model_server_result.job_id Z8PArbGFFVi01lxFW30bhg _model_server_result.datetime_utc '2024-12-26 12:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5KBN # _exptl.entry_id 5KBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBN _cell.length_a 87.655 _cell.length_b 87.655 _cell.length_c 143.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,M,P 1 1 B,C,J,K,L,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 75 A GLY 75 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A O SER 78 A SER 78 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc3 E NA NA . A NA 201 1_555 B O GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 E NA NA . A NA 201 1_555 B O SER 78 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 5KBN _atom_sites.fract_transf_matrix[1][1] 0.011408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 201 1 NA NA . F 4 DMU A 1 202 2 DMU DMU . G 4 DMU A 1 203 3 DMU DMU . H 4 DMU A 1 204 5 DMU DMU . I 5 F A 1 205 1 F F . J 4 DMU B 1 201 1 DMU DMU . K 5 F B 1 202 2 F F . L 4 DMU C 1 101 4 DMU DMU . M 6 HOH A 1 301 27 HOH HOH . M 6 HOH A 2 302 24 HOH HOH . M 6 HOH A 3 303 28 HOH HOH . M 6 HOH A 4 304 2 HOH HOH . M 6 HOH A 5 305 18 HOH HOH . N 6 HOH B 1 301 8 HOH HOH . N 6 HOH B 2 302 25 HOH HOH . N 6 HOH B 3 303 29 HOH HOH . N 6 HOH B 4 304 26 HOH HOH . N 6 HOH B 5 305 10 HOH HOH . N 6 HOH B 6 306 33 HOH HOH . N 6 HOH B 7 307 23 HOH HOH . O 6 HOH C 1 201 19 HOH HOH . O 6 HOH C 2 202 14 HOH HOH . O 6 HOH C 3 203 7 HOH HOH . O 6 HOH C 4 204 17 HOH HOH . O 6 HOH C 5 205 11 HOH HOH . O 6 HOH C 6 206 21 HOH HOH . O 6 HOH C 7 207 12 HOH HOH . O 6 HOH C 8 208 16 HOH HOH . O 6 HOH C 9 209 4 HOH HOH . O 6 HOH C 10 210 22 HOH HOH . P 6 HOH D 1 101 20 HOH HOH . P 6 HOH D 2 102 1 HOH HOH . P 6 HOH D 3 103 32 HOH HOH . P 6 HOH D 4 104 3 HOH HOH . P 6 HOH D 5 105 9 HOH HOH . P 6 HOH D 6 106 30 HOH HOH . P 6 HOH D 7 107 13 HOH HOH . P 6 HOH D 8 108 6 HOH HOH . P 6 HOH D 9 109 15 HOH HOH . P 6 HOH D 10 110 5 HOH HOH . P 6 HOH D 11 111 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . G 4 38.997 -18.484 40.715 1 86.37 ? C1 DMU 203 A 1 HETATM 2 C C2 DMU . . . G 4 38.326 -19.795 41.103 1 83.06 ? C2 DMU 203 A 1 HETATM 3 C C3 DMU . . . G 4 38.976 -20.946 40.346 1 84.63 ? C3 DMU 203 A 1 HETATM 4 C C4 DMU . . . G 4 40.487 -20.952 40.555 1 87.14 ? C4 DMU 203 A 1 HETATM 5 O O5 DMU . . . G 4 41.03 -19.667 40.199 1 89.43 ? O5 DMU 203 A 1 HETATM 6 C C6 DMU . . . G 4 40.497 -18.598 40.961 1 90.28 ? C6 DMU 203 A 1 HETATM 7 O O7 DMU . . . G 4 38.415 -22.172 40.838 1 80.76 ? O7 DMU 203 A 1 HETATM 8 O O16 DMU . . . G 4 41.091 -17.385 40.588 1 96.78 ? O16 DMU 203 A 1 HETATM 9 C C18 DMU . . . G 4 42.245 -17.032 41.357 1 99.65 ? C18 DMU 203 A 1 HETATM 10 C C19 DMU . . . G 4 43.123 -16.104 40.554 1 102.27 ? C19 DMU 203 A 1 HETATM 11 C C22 DMU . . . G 4 43.789 -15.02 41.387 1 105.04 ? C22 DMU 203 A 1 HETATM 12 C C25 DMU . . . G 4 45.061 -14.458 40.772 1 105.38 ? C25 DMU 203 A 1 HETATM 13 C C28 DMU . . . G 4 44.829 -13.519 39.598 1 105.38 ? C28 DMU 203 A 1 HETATM 14 C C31 DMU . . . G 4 46.011 -13.426 38.645 1 104.49 ? C31 DMU 203 A 1 HETATM 15 C C34 DMU . . . G 4 45.942 -12.269 37.661 1 102.59 ? C34 DMU 203 A 1 HETATM 16 C C37 DMU . . . G 4 47.295 -11.872 37.098 1 103.28 ? C37 DMU 203 A 1 HETATM 17 C C40 DMU . . . G 4 47.221 -10.906 35.933 1 103.68 ? C40 DMU 203 A 1 HETATM 18 C C43 DMU . . . G 4 46.987 -11.597 34.613 1 104.41 ? C43 DMU 203 A 1 HETATM 19 O O49 DMU . . . G 4 38.455 -17.408 41.47 1 86.77 ? O49 DMU 203 A 1 HETATM 20 O O55 DMU . . . G 4 36.933 -19.737 40.824 1 78.1 ? O55 DMU 203 A 1 HETATM 21 C C57 DMU . . . G 4 41.211 -21.995 39.725 1 89.02 ? C57 DMU 203 A 1 HETATM 22 O O61 DMU . . . G 4 42.372 -21.487 39.081 1 92.82 ? O61 DMU 203 A 1 HETATM 23 C C5 DMU . . . G 4 36.543 -23.644 40.976 1 79.73 ? C5 DMU 203 A 1 HETATM 24 C C7 DMU . . . G 4 37.346 -24.83 41.5 1 78.64 ? C7 DMU 203 A 1 HETATM 25 C C8 DMU . . . G 4 37.98 -25.594 40.345 1 77.01 ? C8 DMU 203 A 1 HETATM 26 C C9 DMU . . . G 4 38.804 -24.642 39.481 1 77.27 ? C9 DMU 203 A 1 HETATM 27 O O1 DMU . . . G 4 37.984 -23.548 39.027 1 77.73 ? O1 DMU 203 A 1 HETATM 28 C C10 DMU . . . G 4 37.407 -22.775 40.065 1 78.97 ? C10 DMU 203 A 1 HETATM 29 O O2 DMU . . . G 4 38.825 -26.62 40.852 1 74.66 ? O2 DMU 203 A 1 HETATM 30 O O3 DMU . . . G 4 36.045 -22.872 42.065 1 79.93 ? O3 DMU 203 A 1 HETATM 31 O O4 DMU . . . G 4 36.5 -25.694 42.25 1 77.22 ? O4 DMU 203 A 1 HETATM 32 C C11 DMU . . . G 4 39.373 -25.295 38.244 1 75.44 ? C11 DMU 203 A 1 HETATM 33 O O6 DMU . . . G 4 38.355 -25.707 37.336 1 75.73 ? O6 DMU 203 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 547 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #