data_5KBV # _model_server_result.job_id '_MDj5EK8z2LSi3WpQ9S4WQ' _model_server_result.datetime_utc '2025-02-20 09:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 5KBV # _exptl.entry_id 5KBV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 409.254 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KBV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C14 H15 F3 N3 O6 P' _chem_comp.formula_weight 409.254 _chem_comp.id ZK1 _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZK1 doub 404 n n CAU OAB ZK1 doub 405 n n OAC PBA ZK1 doub 406 n n OAD PBA ZK1 sing 407 n n OAD HOAD ZK1 sing 408 n n PBA OAE ZK1 sing 409 n n OAE HOAE ZK1 sing 410 n n FAF CAZ ZK1 sing 411 n n CAZ FAG ZK1 sing 412 n n CAZ FAH ZK1 sing 413 n n CAR CAI ZK1 doub 414 n y CAI CAW ZK1 sing 415 n y CAI HAI ZK1 sing 416 n n CAS CAJ ZK1 doub 417 n y CAJ CAV ZK1 sing 418 n y CAJ HAJ ZK1 sing 419 n n CAK CAM ZK1 sing 420 n n CAK OAQ ZK1 sing 421 n n CAK HAK ZK1 sing 422 n n CAK HAKA ZK1 sing 423 n n OAQ CAL ZK1 sing 424 n n CAL CAN ZK1 sing 425 n n CAL HAL ZK1 sing 426 n n CAL HALA ZK1 sing 427 n n CAM NAX ZK1 sing 428 n n CAM HAM ZK1 sing 429 n n CAM HAMA ZK1 sing 430 n n NAX CAN ZK1 sing 431 n n CAN HAN ZK1 sing 432 n n CAN HANA ZK1 sing 433 n n PBA CAO ZK1 sing 434 n n NAY CAO ZK1 sing 435 n n CAO HAO ZK1 sing 436 n n CAO HAOA ZK1 sing 437 n n CAV NAP ZK1 sing 438 n n NAP CAT ZK1 sing 439 n n NAP HNAP ZK1 sing 440 n n NAX CAR ZK1 sing 441 n n CAS CAR ZK1 sing 442 n y CAZ CAS ZK1 sing 443 n n CAT CAU ZK1 sing 444 n n NAY CAU ZK1 sing 445 n n CAV CAW ZK1 doub 446 n y CAW NAY ZK1 sing 447 n n # _atom_sites.entry_id 5KBV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZK1 A 1 1101 833 ZK1 ZK1 . F 3 NAG A 1 1102 834 NAG NAG . G 2 ZK1 B 1 1101 833 ZK1 ZK1 . H 3 NAG B 1 1102 834 NAG NAG . I 2 ZK1 C 1 1101 833 ZK1 ZK1 . J 3 NAG C 1 1102 834 NAG NAG . K 2 ZK1 D 1 1101 833 ZK1 ZK1 . L 3 NAG D 1 1102 834 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZK1 . . . E 2 120.756 98.372 135.763 1 108.9 ? OAA ZK1 1101 A 1 HETATM 2 O OAB ZK1 . . . E 2 118.609 100.246 135.839 1 108.9 ? OAB ZK1 1101 A 1 HETATM 3 O OAC ZK1 . . . E 2 116.71 103.357 132.36 1 108.9 ? OAC ZK1 1101 A 1 HETATM 4 O OAD ZK1 . . . E 2 118.981 102.697 133.279 1 108.9 ? OAD ZK1 1101 A 1 HETATM 5 O OAE ZK1 . . . E 2 117.199 103.255 135.012 1 108.9 ? OAE ZK1 1101 A 1 HETATM 6 F FAF ZK1 . . . E 2 120.173 97.816 127.761 1 108.9 ? FAF ZK1 1101 A 1 HETATM 7 F FAG ZK1 . . . E 2 120.077 95.878 128.85 1 108.9 ? FAG ZK1 1101 A 1 HETATM 8 F FAH ZK1 . . . E 2 118.244 96.696 127.905 1 108.9 ? FAH ZK1 1101 A 1 HETATM 9 C CAI ZK1 . . . E 2 117.71 99.362 131.115 1 108.9 ? CAI ZK1 1101 A 1 HETATM 10 C CAJ ZK1 . . . E 2 119.849 97.502 131.038 1 108.9 ? CAJ ZK1 1101 A 1 HETATM 11 C CAK ZK1 . . . E 2 116.783 100.085 126.529 1 108.9 ? CAK ZK1 1101 A 1 HETATM 12 C CAL ZK1 . . . E 2 114.993 98.985 127.463 1 108.9 ? CAL ZK1 1101 A 1 HETATM 13 C CAM ZK1 . . . E 2 117.754 99.834 127.644 1 108.9 ? CAM ZK1 1101 A 1 HETATM 14 C CAN ZK1 . . . E 2 115.8 98.437 128.663 1 108.9 ? CAN ZK1 1101 A 1 HETATM 15 C CAO ZK1 . . . E 2 117.078 100.776 133.56 1 108.9 ? CAO ZK1 1101 A 1 HETATM 16 N NAP ZK1 . . . E 2 120.307 97.93 133.377 1 108.9 ? NAP ZK1 1101 A 1 HETATM 17 O OAQ ZK1 . . . E 2 115.501 100.22 127.028 1 108.9 ? OAQ ZK1 1101 A 1 HETATM 18 C CAR ZK1 . . . E 2 118.005 98.685 129.904 1 108.9 ? CAR ZK1 1101 A 1 HETATM 19 C CAS ZK1 . . . E 2 119.068 97.758 129.853 1 108.9 ? CAS ZK1 1101 A 1 HETATM 20 C CAT ZK1 . . . E 2 120.001 98.621 134.6 1 108.9 ? CAT ZK1 1101 A 1 HETATM 21 C CAU ZK1 . . . E 2 118.906 99.573 134.644 1 108.9 ? CAU ZK1 1101 A 1 HETATM 22 C CAV ZK1 . . . E 2 119.557 98.174 132.239 1 108.9 ? CAV ZK1 1101 A 1 HETATM 23 C CAW ZK1 . . . E 2 118.486 99.108 132.284 1 108.9 ? CAW ZK1 1101 A 1 HETATM 24 N NAX ZK1 . . . E 2 117.197 98.963 128.726 1 108.9 ? NAX ZK1 1101 A 1 HETATM 25 N NAY ZK1 . . . E 2 118.172 99.81 133.531 1 108.9 ? NAY ZK1 1101 A 1 HETATM 26 C CAZ ZK1 . . . E 2 119.398 97.021 128.558 1 108.9 ? CAZ ZK1 1101 A 1 HETATM 27 P PBA ZK1 . . . E 2 117.549 102.578 133.547 1 108.9 ? PBA ZK1 1101 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #