data_5KCB # _model_server_result.job_id 3h6OAH48OTRdIfEL5ho_VQ _model_server_result.datetime_utc '2024-11-26 10:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KCB # _exptl.entry_id 5KCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ETHIDIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCB _cell.length_a 73.72 _cell.length_b 73.72 _cell.length_c 68.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 100 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 101 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id CE _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 112 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 113 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.108 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H20 N3 1' _chem_comp.formula_weight 314.404 _chem_comp.id ET _chem_comp.mon_nstd_flag . _chem_comp.name ETHIDIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ET doub 83 n y C1 C13 ET sing 84 n y C1 H1 ET sing 85 n n C2 C3 ET sing 86 n y C2 H2 ET sing 87 n n C3 C4 ET doub 88 n y C3 N23 ET sing 89 n n C4 C14 ET sing 90 n y C4 H4 ET sing 91 n n N5 C6 ET doub 92 n y N5 C14 ET sing 93 n y N5 C21 ET sing 94 n n C6 C11 ET sing 95 n y C6 C15 ET sing 96 n y C7 C8 ET doub 97 n y C7 C11 ET sing 98 n y C7 H7 ET sing 99 n n C8 C9 ET sing 100 n y C8 N24 ET sing 101 n n C9 C10 ET doub 102 n y C9 H9 ET sing 103 n n C10 C12 ET sing 104 n y C10 H10 ET sing 105 n n C11 C12 ET doub 106 n y C12 C13 ET sing 107 n y C13 C14 ET doub 108 n y C15 C16 ET doub 109 n y C15 C20 ET sing 110 n y C16 C17 ET sing 111 n y C16 H16 ET sing 112 n n C17 C18 ET doub 113 n y C17 H17 ET sing 114 n n C18 C19 ET sing 115 n y C18 H18 ET sing 116 n n C19 C20 ET doub 117 n y C19 H19 ET sing 118 n n C20 H20 ET sing 119 n n C21 C22 ET sing 120 n n C21 H211 ET sing 121 n n C21 H212 ET sing 122 n n C22 H221 ET sing 123 n n C22 H222 ET sing 124 n n C22 H223 ET sing 125 n n N23 H231 ET sing 126 n n N23 H232 ET sing 127 n n N24 H241 ET sing 128 n n N24 H242 ET sing 129 n n # _atom_sites.entry_id 5KCB _atom_sites.fract_transf_matrix[1][1] 0.013565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ET A 1 201 2 ET ET . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 4 HOH A 1 301 61 HOH HOH . F 4 HOH A 2 302 57 HOH HOH . F 4 HOH A 3 303 51 HOH HOH . F 4 HOH A 4 304 62 HOH HOH . F 4 HOH A 5 305 72 HOH HOH . F 4 HOH A 6 306 49 HOH HOH . F 4 HOH A 7 307 53 HOH HOH . F 4 HOH A 8 308 37 HOH HOH . F 4 HOH A 9 309 59 HOH HOH . F 4 HOH A 10 310 17 HOH HOH . F 4 HOH A 11 311 32 HOH HOH . F 4 HOH A 12 312 10 HOH HOH . F 4 HOH A 13 313 56 HOH HOH . F 4 HOH A 14 314 7 HOH HOH . F 4 HOH A 15 315 45 HOH HOH . F 4 HOH A 16 316 28 HOH HOH . F 4 HOH A 17 317 60 HOH HOH . F 4 HOH A 18 318 73 HOH HOH . F 4 HOH A 19 319 24 HOH HOH . F 4 HOH A 20 320 69 HOH HOH . F 4 HOH A 21 321 68 HOH HOH . F 4 HOH A 22 322 21 HOH HOH . F 4 HOH A 23 323 35 HOH HOH . F 4 HOH A 24 324 38 HOH HOH . F 4 HOH A 25 325 18 HOH HOH . F 4 HOH A 26 326 50 HOH HOH . F 4 HOH A 27 327 70 HOH HOH . F 4 HOH A 28 328 30 HOH HOH . F 4 HOH A 29 329 15 HOH HOH . F 4 HOH A 30 330 77 HOH HOH . F 4 HOH A 31 331 9 HOH HOH . F 4 HOH A 32 332 34 HOH HOH . F 4 HOH A 33 333 40 HOH HOH . F 4 HOH A 34 334 75 HOH HOH . F 4 HOH A 35 335 3 HOH HOH . F 4 HOH A 36 336 39 HOH HOH . F 4 HOH A 37 337 48 HOH HOH . F 4 HOH A 38 338 42 HOH HOH . F 4 HOH A 39 339 8 HOH HOH . F 4 HOH A 40 340 11 HOH HOH . F 4 HOH A 41 341 55 HOH HOH . F 4 HOH A 42 342 43 HOH HOH . F 4 HOH A 43 343 29 HOH HOH . F 4 HOH A 44 344 23 HOH HOH . F 4 HOH A 45 345 6 HOH HOH . F 4 HOH A 46 346 76 HOH HOH . F 4 HOH A 47 347 14 HOH HOH . F 4 HOH A 48 348 19 HOH HOH . F 4 HOH A 49 349 1 HOH HOH . F 4 HOH A 50 350 66 HOH HOH . F 4 HOH A 51 351 46 HOH HOH . F 4 HOH A 52 352 2 HOH HOH . F 4 HOH A 53 353 20 HOH HOH . F 4 HOH A 54 354 16 HOH HOH . F 4 HOH A 55 355 52 HOH HOH . F 4 HOH A 56 356 64 HOH HOH . F 4 HOH A 57 357 27 HOH HOH . F 4 HOH A 58 358 12 HOH HOH . F 4 HOH A 59 359 44 HOH HOH . F 4 HOH A 60 360 31 HOH HOH . F 4 HOH A 61 361 25 HOH HOH . F 4 HOH A 62 362 41 HOH HOH . F 4 HOH A 63 363 22 HOH HOH . F 4 HOH A 64 364 78 HOH HOH . F 4 HOH A 65 365 65 HOH HOH . F 4 HOH A 66 366 5 HOH HOH . F 4 HOH A 67 367 71 HOH HOH . F 4 HOH A 68 368 13 HOH HOH . F 4 HOH A 69 369 26 HOH HOH . F 4 HOH A 70 370 54 HOH HOH . F 4 HOH A 71 371 67 HOH HOH . F 4 HOH A 72 372 36 HOH HOH . F 4 HOH A 73 373 47 HOH HOH . F 4 HOH A 74 374 58 HOH HOH . F 4 HOH A 75 375 33 HOH HOH . F 4 HOH A 76 376 74 HOH HOH . F 4 HOH A 77 377 63 HOH HOH . F 4 HOH A 78 378 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ET . . . B 2 -12.236 -0.543 -0.116 1 131.21 ? C1 ET 201 A 1 HETATM 2 C C2 ET . . . B 2 -11.387 -0.146 0.896 1 132.59 ? C2 ET 201 A 1 HETATM 3 C C3 ET . . . B 2 -10.326 -0.954 1.28 1 132.86 ? C3 ET 201 A 1 HETATM 4 C C4 ET . . . B 2 -10.074 -2.175 0.664 1 131.24 ? C4 ET 201 A 1 HETATM 5 N N5 ET . . . B 2 -10.652 -3.877 -1.011 1 125.54 ? N5 ET 201 A 1 HETATM 6 C C6 ET . . . B 2 -11.461 -4.313 -2.008 1 127.56 ? C6 ET 201 A 1 HETATM 7 C C7 ET . . . B 2 -13.447 -3.914 -3.471 1 123.14 ? C7 ET 201 A 1 HETATM 8 C C8 ET . . . B 2 -14.512 -3.118 -3.862 1 121.28 ? C8 ET 201 A 1 HETATM 9 C C9 ET . . . B 2 -14.78 -1.898 -3.262 1 122.02 ? C9 ET 201 A 1 HETATM 10 C C10 ET . . . B 2 -13.981 -1.43 -2.239 1 123.6 ? C10 ET 201 A 1 HETATM 11 C C11 ET . . . B 2 -12.617 -3.49 -2.455 1 125.5 ? C11 ET 201 A 1 HETATM 12 C C12 ET . . . B 2 -12.91 -2.193 -1.825 1 125.91 ? C12 ET 201 A 1 HETATM 13 C C13 ET . . . B 2 -12.021 -1.752 -0.746 1 128.8 ? C13 ET 201 A 1 HETATM 14 C C14 ET . . . B 2 -10.895 -2.634 -0.354 1 128.73 ? C14 ET 201 A 1 HETATM 15 C C15 ET . . . B 2 -11.246 -5.622 -2.7 1 131.27 ? C15 ET 201 A 1 HETATM 16 C C16 ET . . . B 2 -12.173 -6.643 -2.541 1 132.7 ? C16 ET 201 A 1 HETATM 17 C C17 ET . . . B 2 -11.989 -7.86 -3.172 1 133.85 ? C17 ET 201 A 1 HETATM 18 C C18 ET . . . B 2 -10.863 -8.08 -3.962 1 134.47 ? C18 ET 201 A 1 HETATM 19 C C19 ET . . . B 2 -9.925 -7.067 -4.127 1 134.28 ? C19 ET 201 A 1 HETATM 20 C C20 ET . . . B 2 -10.129 -5.834 -3.5 1 133.16 ? C20 ET 201 A 1 HETATM 21 C C21 ET . . . B 2 -9.515 -4.696 -0.551 1 120.34 ? C21 ET 201 A 1 HETATM 22 C C22 ET . . . B 2 -9.769 -5.271 0.826 1 116.88 ? C22 ET 201 A 1 HETATM 23 N N23 ET . . . B 2 -9.516 -0.532 2.274 1 133.7 ? N23 ET 201 A 1 HETATM 24 N N24 ET . . . B 2 -15.313 -3.544 -4.851 1 119.6 ? N24 ET 201 A 1 HETATM 25 H H1 ET . . . B 2 -13.065 0.085 -0.411 1 157.46 ? H1 ET 201 A 1 HETATM 26 H H2 ET . . . B 2 -11.554 0.799 1.397 1 159.11 ? H2 ET 201 A 1 HETATM 27 H H4 ET . . . B 2 -9.236 -2.776 0.99 1 157.49 ? H4 ET 201 A 1 HETATM 28 H H7 ET . . . B 2 -13.266 -4.864 -3.958 1 147.77 ? H7 ET 201 A 1 HETATM 29 H H9 ET . . . B 2 -15.623 -1.311 -3.599 1 146.42 ? H9 ET 201 A 1 HETATM 30 H H10 ET . . . B 2 -14.187 -0.477 -1.775 1 148.31 ? H10 ET 201 A 1 HETATM 31 H H16 ET . . . B 2 -13.049 -6.488 -1.926 1 159.24 ? H16 ET 201 A 1 HETATM 32 H H17 ET . . . B 2 -12.717 -8.649 -3.041 1 160.63 ? H17 ET 201 A 1 HETATM 33 H H18 ET . . . B 2 -10.723 -9.033 -4.455 1 161.36 ? H18 ET 201 A 1 HETATM 34 H H19 ET . . . B 2 -9.054 -7.232 -4.749 1 161.14 ? H19 ET 201 A 1 HETATM 35 H H20 ET . . . B 2 -9.399 -5.042 -3.616 1 159.8 ? H20 ET 201 A 1 HETATM 36 H H211 ET . . . B 2 -8.62 -4.07 -0.514 1 144.4 ? H211 ET 201 A 1 HETATM 37 H H212 ET . . . B 2 -9.307 -5.515 -1.234 1 144.4 ? H212 ET 201 A 1 HETATM 38 H H221 ET . . . B 2 -8.888 -5.734 1.185 1 140.25 ? H221 ET 201 A 1 HETATM 39 H H222 ET . . . B 2 -10.543 -5.989 0.77 1 140.25 ? H222 ET 201 A 1 HETATM 40 H H223 ET . . . B 2 -10.059 -4.496 1.482 1 140.25 ? H223 ET 201 A 1 HETATM 41 H H231 ET . . . B 2 -9.69 0.353 2.724 1 160.44 ? H231 ET 201 A 1 HETATM 42 H H232 ET . . . B 2 -8.737 -1.103 2.566 1 160.44 ? H232 ET 201 A 1 HETATM 43 H H241 ET . . . B 2 -16.092 -2.975 -5.145 1 143.52 ? H241 ET 201 A 1 HETATM 44 H H242 ET . . . B 2 -15.135 -4.432 -5.297 1 143.52 ? H242 ET 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 478 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #