data_5KCC # _model_server_result.job_id '_Qw-mOfFcxyhU4hGYntyvA' _model_server_result.datetime_utc '2024-11-22 20:31:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KCC # _exptl.entry_id 5KCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.492 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-N-phenyl-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.8 _cell.angle_gamma 90 _cell.entry_id 5KCC _cell.length_a 54.53 _cell.length_b 81.16 _cell.length_c 58.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H21 N O5 S' _chem_comp.formula_weight 435.492 _chem_comp.id OB1 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-N-phenyl-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 S01 OB1 doub 237 n n S01 N01 OB1 sing 238 n n S01 O05 OB1 doub 239 n n S01 C17 OB1 sing 240 n n N01 C19 OB1 sing 241 n n C20 C19 OB1 doub 242 n y C20 C21 OB1 sing 243 n y C19 C24 OB1 sing 244 n y C18 C17 OB1 sing 245 n n C18 C09 OB1 sing 246 n n C21 C22 OB1 doub 247 n y C17 C11 OB1 sing 248 n n C24 C23 OB1 doub 249 n y C22 C23 OB1 sing 250 n y C09 O03 OB1 sing 251 n n C09 C08 OB1 sing 252 n n C11 O03 OB1 sing 253 n n C11 C07 OB1 sing 254 n n C16 C15 OB1 doub 255 n y C16 C10 OB1 sing 256 n y C08 C07 OB1 doub 257 n n C08 C10 OB1 sing 258 n n C15 C14 OB1 sing 259 n y C07 C05 OB1 sing 260 n n C10 C12 OB1 doub 261 n y C05 C06 OB1 doub 262 n y C05 C04 OB1 sing 263 n y C06 C01 OB1 sing 264 n y C14 O02 OB1 sing 265 n n C14 C13 OB1 doub 266 n y C04 C03 OB1 doub 267 n y C01 C02 OB1 doub 268 n y C12 C13 OB1 sing 269 n y C03 C02 OB1 sing 270 n y C02 O01 OB1 sing 271 n n C01 H1 OB1 sing 272 n n C03 H2 OB1 sing 273 n n C04 H3 OB1 sing 274 n n C06 H4 OB1 sing 275 n n O01 H5 OB1 sing 276 n n C09 H6 OB1 sing 277 n n C11 H7 OB1 sing 278 n n C12 H8 OB1 sing 279 n n C13 H9 OB1 sing 280 n n C15 H10 OB1 sing 281 n n C16 H11 OB1 sing 282 n n O02 H12 OB1 sing 283 n n C17 H13 OB1 sing 284 n n C18 H14 OB1 sing 285 n n C18 H15 OB1 sing 286 n n N01 H16 OB1 sing 287 n n C20 H17 OB1 sing 288 n n C21 H18 OB1 sing 289 n n C22 H19 OB1 sing 290 n n C23 H20 OB1 sing 291 n n C24 H21 OB1 sing 292 n n # _atom_sites.entry_id 5KCC _atom_sites.fract_transf_matrix[1][1] 0.018339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006966 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OB1 A 1 601 1 OB1 OB1 . F 3 OB1 B 1 601 2 OB1 OB1 . G 4 HOH A 1 701 84 HOH HOH . G 4 HOH A 2 702 1 HOH HOH . G 4 HOH A 3 703 54 HOH HOH . G 4 HOH A 4 704 32 HOH HOH . G 4 HOH A 5 705 11 HOH HOH . G 4 HOH A 6 706 70 HOH HOH . G 4 HOH A 7 707 63 HOH HOH . G 4 HOH A 8 708 6 HOH HOH . G 4 HOH A 9 709 96 HOH HOH . G 4 HOH A 10 710 25 HOH HOH . G 4 HOH A 11 711 36 HOH HOH . G 4 HOH A 12 712 15 HOH HOH . G 4 HOH A 13 713 13 HOH HOH . G 4 HOH A 14 714 28 HOH HOH . G 4 HOH A 15 715 34 HOH HOH . G 4 HOH A 16 716 88 HOH HOH . G 4 HOH A 17 717 62 HOH HOH . G 4 HOH A 18 718 89 HOH HOH . G 4 HOH A 19 719 66 HOH HOH . G 4 HOH A 20 720 46 HOH HOH . G 4 HOH A 21 721 67 HOH HOH . G 4 HOH A 22 722 55 HOH HOH . G 4 HOH A 23 723 41 HOH HOH . G 4 HOH A 24 724 35 HOH HOH . G 4 HOH A 25 725 52 HOH HOH . G 4 HOH A 26 726 49 HOH HOH . G 4 HOH A 27 727 44 HOH HOH . G 4 HOH A 28 728 8 HOH HOH . G 4 HOH A 29 729 27 HOH HOH . G 4 HOH A 30 730 74 HOH HOH . G 4 HOH A 31 731 103 HOH HOH . G 4 HOH A 32 732 24 HOH HOH . G 4 HOH A 33 733 71 HOH HOH . G 4 HOH A 34 734 104 HOH HOH . G 4 HOH A 35 735 79 HOH HOH . G 4 HOH A 36 736 20 HOH HOH . G 4 HOH A 37 737 81 HOH HOH . G 4 HOH A 38 738 102 HOH HOH . G 4 HOH A 39 739 99 HOH HOH . G 4 HOH A 40 740 69 HOH HOH . G 4 HOH A 41 741 22 HOH HOH . H 4 HOH B 1 701 17 HOH HOH . H 4 HOH B 2 702 91 HOH HOH . H 4 HOH B 3 703 86 HOH HOH . H 4 HOH B 4 704 4 HOH HOH . H 4 HOH B 5 705 39 HOH HOH . H 4 HOH B 6 706 61 HOH HOH . H 4 HOH B 7 707 14 HOH HOH . H 4 HOH B 8 708 2 HOH HOH . H 4 HOH B 9 709 7 HOH HOH . H 4 HOH B 10 710 78 HOH HOH . H 4 HOH B 11 711 12 HOH HOH . H 4 HOH B 12 712 90 HOH HOH . H 4 HOH B 13 713 5 HOH HOH . H 4 HOH B 14 714 37 HOH HOH . H 4 HOH B 15 715 77 HOH HOH . H 4 HOH B 16 716 53 HOH HOH . H 4 HOH B 17 717 9 HOH HOH . H 4 HOH B 18 718 93 HOH HOH . H 4 HOH B 19 719 57 HOH HOH . H 4 HOH B 20 720 83 HOH HOH . H 4 HOH B 21 721 98 HOH HOH . H 4 HOH B 22 722 43 HOH HOH . H 4 HOH B 23 723 45 HOH HOH . H 4 HOH B 24 724 21 HOH HOH . H 4 HOH B 25 725 51 HOH HOH . H 4 HOH B 26 726 33 HOH HOH . H 4 HOH B 27 727 76 HOH HOH . H 4 HOH B 28 728 40 HOH HOH . H 4 HOH B 29 729 19 HOH HOH . H 4 HOH B 30 730 16 HOH HOH . H 4 HOH B 31 731 50 HOH HOH . H 4 HOH B 32 732 26 HOH HOH . H 4 HOH B 33 733 31 HOH HOH . H 4 HOH B 34 734 68 HOH HOH . H 4 HOH B 35 735 29 HOH HOH . H 4 HOH B 36 736 60 HOH HOH . H 4 HOH B 37 737 75 HOH HOH . H 4 HOH B 38 738 97 HOH HOH . H 4 HOH B 39 739 3 HOH HOH . H 4 HOH B 40 740 94 HOH HOH . H 4 HOH B 41 741 18 HOH HOH . H 4 HOH B 42 742 30 HOH HOH . H 4 HOH B 43 743 101 HOH HOH . H 4 HOH B 44 744 85 HOH HOH . H 4 HOH B 45 745 100 HOH HOH . H 4 HOH B 46 746 23 HOH HOH . H 4 HOH B 47 747 48 HOH HOH . H 4 HOH B 48 748 92 HOH HOH . H 4 HOH B 49 749 10 HOH HOH . H 4 HOH B 50 750 64 HOH HOH . H 4 HOH B 51 751 42 HOH HOH . H 4 HOH B 52 752 82 HOH HOH . H 4 HOH B 53 753 56 HOH HOH . H 4 HOH B 54 754 80 HOH HOH . H 4 HOH B 55 755 65 HOH HOH . H 4 HOH B 56 756 73 HOH HOH . H 4 HOH B 57 757 72 HOH HOH . I 4 HOH C 1 701 59 HOH HOH . I 4 HOH C 2 702 58 HOH HOH . I 4 HOH C 3 703 47 HOH HOH . J 4 HOH D 1 701 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 OB1 . . . F 3 22.453 14.481 5.349 0.78 27.97 ? C01 OB1 601 B 1 HETATM 2 C C02 OB1 . . . F 3 23.564 13.814 5.605 0.78 34.6 ? C02 OB1 601 B 1 HETATM 3 C C03 OB1 . . . F 3 23.464 12.544 5.947 0.78 28.49 ? C03 OB1 601 B 1 HETATM 4 C C04 OB1 . . . F 3 22.284 11.979 6.02 0.78 26.98 ? C04 OB1 601 B 1 HETATM 5 C C05 OB1 . . . F 3 21.16 12.624 5.738 0.78 26.78 ? C05 OB1 601 B 1 HETATM 6 C C06 OB1 . . . F 3 21.296 13.893 5.42 0.78 25.91 ? C06 OB1 601 B 1 HETATM 7 O O01 OB1 . . . F 3 24.747 14.397 5.533 0.78 37.54 ? O01 OB1 601 B 1 HETATM 8 C C07 OB1 . . . F 3 19.966 12.034 5.831 0.78 28.82 ? C07 OB1 601 B 1 HETATM 9 C C08 OB1 . . . F 3 18.831 12.039 5.098 0.78 27.46 ? C08 OB1 601 B 1 HETATM 10 C C09 OB1 . . . F 3 17.923 11.131 5.899 0.78 28.33 ? C09 OB1 601 B 1 HETATM 11 C C10 OB1 . . . F 3 18.44 12.662 3.973 0.78 27.29 ? C10 OB1 601 B 1 HETATM 12 C C11 OB1 . . . F 3 19.631 11.119 6.978 0.78 29.9 ? C11 OB1 601 B 1 HETATM 13 C C12 OB1 . . . F 3 19.291 13.068 3.034 0.78 25.42 ? C12 OB1 601 B 1 HETATM 14 C C13 OB1 . . . F 3 18.905 13.688 1.937 0.78 22.38 ? C13 OB1 601 B 1 HETATM 15 C C14 OB1 . . . F 3 17.632 13.953 1.713 0.78 21.33 ? C14 OB1 601 B 1 HETATM 16 C C15 OB1 . . . F 3 16.776 13.54 2.641 0.78 25.9 ? C15 OB1 601 B 1 HETATM 17 C C16 OB1 . . . F 3 17.162 12.907 3.742 0.78 23.65 ? C16 OB1 601 B 1 HETATM 18 O O02 OB1 . . . F 3 17.218 14.574 0.627 0.78 22.56 ? O02 OB1 601 B 1 HETATM 19 C C17 OB1 . . . F 3 18.731 11.891 7.943 0.78 31.59 ? C17 OB1 601 B 1 HETATM 20 C C18 OB1 . . . F 3 17.434 11.86 7.129 0.78 28.33 ? C18 OB1 601 B 1 HETATM 21 S S01 OB1 . . . F 3 18.603 11.157 9.499 0.78 26.38 ? S01 OB1 601 B 1 HETATM 22 O O03 OB1 . . . F 3 18.782 10.205 6.421 0.78 29.5 ? O03 OB1 601 B 1 HETATM 23 N N01 OB1 . . . F 3 20.017 11.218 10.348 0.78 37.67 ? N01 OB1 601 B 1 HETATM 24 O O04 OB1 . . . F 3 17.944 11.819 10.48 0.78 30.29 ? O04 OB1 601 B 1 HETATM 25 O O05 OB1 . . . F 3 18.525 9.779 9.45 0.78 35.88 ? O05 OB1 601 B 1 HETATM 26 C C19 OB1 . . . F 3 20.93 10.36 10.505 0.78 39.92 ? C19 OB1 601 B 1 HETATM 27 C C20 OB1 . . . F 3 20.668 9.283 11.239 0.78 44.92 ? C20 OB1 601 B 1 HETATM 28 C C21 OB1 . . . F 3 21.561 8.339 11.456 0.78 45.82 ? C21 OB1 601 B 1 HETATM 29 C C22 OB1 . . . F 3 22.752 8.473 10.925 0.78 48.22 ? C22 OB1 601 B 1 HETATM 30 C C23 OB1 . . . F 3 23.022 9.545 10.202 0.78 48.85 ? C23 OB1 601 B 1 HETATM 31 C C24 OB1 . . . F 3 22.121 10.486 9.978 0.78 40.6 ? C24 OB1 601 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #