data_5KCH # _model_server_result.job_id '_vXAePzUw2MPPoQExH6JbQ' _model_server_result.datetime_utc '2024-11-26 00:17:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CB","auth_seq_id":554}' # _entry.id 5KCH # _exptl.entry_id 5KCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.263 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methoxy-N-[(pyridin-2-yl)methyl]aniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCH _cell.length_a 55.967 _cell.length_b 63.607 _cell.length_c 70.457 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id CB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H14 N2 O' _chem_comp.formula_weight 214.263 _chem_comp.id 6RN _chem_comp.mon_nstd_flag . _chem_comp.name 4-methoxy-N-[(pyridin-2-yl)methyl]aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 6RN sing 1 n n C1 C12 6RN doub 2 n y C1 C2 6RN sing 3 n y C12 C11 6RN sing 4 n y C2 C3 6RN doub 5 n y C11 C4 6RN doub 6 n y C8 C7 6RN doub 7 n y C8 C9 6RN sing 8 n y C3 C4 6RN sing 9 n y C7 C6 6RN sing 10 n y C4 N 6RN sing 11 n n C9 C10 6RN doub 12 n y C6 C5 6RN sing 13 n n C6 N1 6RN doub 14 n y N C5 6RN sing 15 n n C10 N1 6RN sing 16 n y C5 H1 6RN sing 17 n n C5 H2 6RN sing 18 n n C7 H3 6RN sing 19 n n C8 H4 6RN sing 20 n n C9 H5 6RN sing 21 n n C10 H6 6RN sing 22 n n C11 H7 6RN sing 23 n n C12 H8 6RN sing 24 n n C3 H10 6RN sing 25 n n C2 H11 6RN sing 26 n n N H12 6RN sing 27 n n O C13 6RN sing 28 n n C13 H9 6RN sing 29 n n C13 H13 6RN sing 30 n n C13 H14 6RN sing 31 n n # _atom_sites.entry_id 5KCH _atom_sites.fract_transf_matrix[1][1] 0.017868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 501 1 UNX UNX . C 2 UNX A 1 502 3 UNX UNX . D 2 UNX A 1 503 4 UNX UNX . E 2 UNX A 1 504 5 UNX UNX . F 2 UNX A 1 505 9 UNX UNX . G 2 UNX A 1 506 12 UNX UNX . H 2 UNX A 1 507 13 UNX UNX . I 2 UNX A 1 508 14 UNX UNX . J 2 UNX A 1 509 16 UNX UNX . K 2 UNX A 1 510 18 UNX UNX . L 2 UNX A 1 511 19 UNX UNX . M 2 UNX A 1 512 20 UNX UNX . N 2 UNX A 1 513 21 UNX UNX . O 2 UNX A 1 514 23 UNX UNX . P 2 UNX A 1 515 25 UNX UNX . Q 2 UNX A 1 516 26 UNX UNX . R 2 UNX A 1 517 27 UNX UNX . S 2 UNX A 1 518 28 UNX UNX . T 2 UNX A 1 519 30 UNX UNX . U 2 UNX A 1 520 32 UNX UNX . V 2 UNX A 1 521 33 UNX UNX . W 2 UNX A 1 522 35 UNX UNX . X 2 UNX A 1 523 36 UNX UNX . Y 2 UNX A 1 524 37 UNX UNX . Z 2 UNX A 1 525 38 UNX UNX . AA 2 UNX A 1 526 40 UNX UNX . BA 2 UNX A 1 527 41 UNX UNX . CA 2 UNX A 1 528 42 UNX UNX . DA 2 UNX A 1 529 44 UNX UNX . EA 2 UNX A 1 530 45 UNX UNX . FA 2 UNX A 1 531 46 UNX UNX . GA 2 UNX A 1 532 49 UNX UNX . HA 2 UNX A 1 533 50 UNX UNX . IA 2 UNX A 1 534 51 UNX UNX . JA 2 UNX A 1 535 53 UNX UNX . KA 2 UNX A 1 536 56 UNX UNX . LA 2 UNX A 1 537 57 UNX UNX . MA 2 UNX A 1 538 58 UNX UNX . NA 2 UNX A 1 539 59 UNX UNX . OA 2 UNX A 1 540 60 UNX UNX . PA 2 UNX A 1 541 61 UNX UNX . QA 2 UNX A 1 542 62 UNX UNX . RA 2 UNX A 1 543 63 UNX UNX . SA 2 UNX A 1 544 64 UNX UNX . TA 2 UNX A 1 545 65 UNX UNX . UA 2 UNX A 1 546 66 UNX UNX . VA 2 UNX A 1 547 67 UNX UNX . WA 2 UNX A 1 548 68 UNX UNX . XA 2 UNX A 1 549 69 UNX UNX . YA 2 UNX A 1 550 70 UNX UNX . ZA 3 DMS A 1 551 1 DMS DMS . AB 4 SO4 A 1 552 1 SO4 SO4 . BB 4 SO4 A 1 553 2 SO4 SO4 . CB 5 6RN A 1 554 1 6RN XXX . DB 6 HOH A 1 601 51 HOH HOH . DB 6 HOH A 2 602 141 HOH HOH . DB 6 HOH A 3 603 41 HOH HOH . DB 6 HOH A 4 604 85 HOH HOH . DB 6 HOH A 5 605 132 HOH HOH . DB 6 HOH A 6 606 129 HOH HOH . DB 6 HOH A 7 607 12 HOH HOH . DB 6 HOH A 8 608 69 HOH HOH . DB 6 HOH A 9 609 61 HOH HOH . DB 6 HOH A 10 610 150 HOH HOH . DB 6 HOH A 11 611 11 HOH HOH . DB 6 HOH A 12 612 36 HOH HOH . DB 6 HOH A 13 613 56 HOH HOH . DB 6 HOH A 14 614 58 HOH HOH . DB 6 HOH A 15 615 146 HOH HOH . DB 6 HOH A 16 616 26 HOH HOH . DB 6 HOH A 17 617 65 HOH HOH . DB 6 HOH A 18 618 70 HOH HOH . DB 6 HOH A 19 619 34 HOH HOH . DB 6 HOH A 20 620 137 HOH HOH . DB 6 HOH A 21 621 38 HOH HOH . DB 6 HOH A 22 622 54 HOH HOH . DB 6 HOH A 23 623 37 HOH HOH . DB 6 HOH A 24 624 16 HOH HOH . DB 6 HOH A 25 625 35 HOH HOH . DB 6 HOH A 26 626 4 HOH HOH . DB 6 HOH A 27 627 115 HOH HOH . DB 6 HOH A 28 628 105 HOH HOH . DB 6 HOH A 29 629 29 HOH HOH . DB 6 HOH A 30 630 145 HOH HOH . DB 6 HOH A 31 631 67 HOH HOH . DB 6 HOH A 32 632 30 HOH HOH . DB 6 HOH A 33 633 20 HOH HOH . DB 6 HOH A 34 634 152 HOH HOH . DB 6 HOH A 35 635 91 HOH HOH . DB 6 HOH A 36 636 42 HOH HOH . DB 6 HOH A 37 637 106 HOH HOH . DB 6 HOH A 38 638 8 HOH HOH . DB 6 HOH A 39 639 147 HOH HOH . DB 6 HOH A 40 640 59 HOH HOH . DB 6 HOH A 41 641 50 HOH HOH . DB 6 HOH A 42 642 108 HOH HOH . DB 6 HOH A 43 643 98 HOH HOH . DB 6 HOH A 44 644 149 HOH HOH . DB 6 HOH A 45 645 86 HOH HOH . DB 6 HOH A 46 646 156 HOH HOH . DB 6 HOH A 47 647 39 HOH HOH . DB 6 HOH A 48 648 5 HOH HOH . DB 6 HOH A 49 649 83 HOH HOH . DB 6 HOH A 50 650 22 HOH HOH . DB 6 HOH A 51 651 117 HOH HOH . DB 6 HOH A 52 652 14 HOH HOH . DB 6 HOH A 53 653 40 HOH HOH . DB 6 HOH A 54 654 90 HOH HOH . DB 6 HOH A 55 655 15 HOH HOH . DB 6 HOH A 56 656 33 HOH HOH . DB 6 HOH A 57 657 103 HOH HOH . DB 6 HOH A 58 658 17 HOH HOH . DB 6 HOH A 59 659 27 HOH HOH . DB 6 HOH A 60 660 153 HOH HOH . DB 6 HOH A 61 661 18 HOH HOH . DB 6 HOH A 62 662 44 HOH HOH . DB 6 HOH A 63 663 63 HOH HOH . DB 6 HOH A 64 664 154 HOH HOH . DB 6 HOH A 65 665 23 HOH HOH . DB 6 HOH A 66 666 3 HOH HOH . DB 6 HOH A 67 667 45 HOH HOH . DB 6 HOH A 68 668 88 HOH HOH . DB 6 HOH A 69 669 49 HOH HOH . DB 6 HOH A 70 670 13 HOH HOH . DB 6 HOH A 71 671 28 HOH HOH . DB 6 HOH A 72 672 7 HOH HOH . DB 6 HOH A 73 673 134 HOH HOH . DB 6 HOH A 74 674 135 HOH HOH . DB 6 HOH A 75 675 25 HOH HOH . DB 6 HOH A 76 676 19 HOH HOH . DB 6 HOH A 77 677 139 HOH HOH . DB 6 HOH A 78 678 21 HOH HOH . DB 6 HOH A 79 679 120 HOH HOH . DB 6 HOH A 80 680 73 HOH HOH . DB 6 HOH A 81 681 94 HOH HOH . DB 6 HOH A 82 682 48 HOH HOH . DB 6 HOH A 83 683 155 HOH HOH . DB 6 HOH A 84 684 72 HOH HOH . DB 6 HOH A 85 685 31 HOH HOH . DB 6 HOH A 86 686 64 HOH HOH . DB 6 HOH A 87 687 144 HOH HOH . DB 6 HOH A 88 688 32 HOH HOH . DB 6 HOH A 89 689 130 HOH HOH . DB 6 HOH A 90 690 138 HOH HOH . DB 6 HOH A 91 691 6 HOH HOH . DB 6 HOH A 92 692 136 HOH HOH . DB 6 HOH A 93 693 53 HOH HOH . DB 6 HOH A 94 694 148 HOH HOH . DB 6 HOH A 95 695 76 HOH HOH . DB 6 HOH A 96 696 79 HOH HOH . DB 6 HOH A 97 697 62 HOH HOH . DB 6 HOH A 98 698 74 HOH HOH . DB 6 HOH A 99 699 140 HOH HOH . DB 6 HOH A 100 700 84 HOH HOH . DB 6 HOH A 101 701 43 HOH HOH . DB 6 HOH A 102 702 118 HOH HOH . DB 6 HOH A 103 703 111 HOH HOH . DB 6 HOH A 104 704 131 HOH HOH . DB 6 HOH A 105 705 142 HOH HOH . DB 6 HOH A 106 706 122 HOH HOH . DB 6 HOH A 107 707 125 HOH HOH . DB 6 HOH A 108 708 143 HOH HOH . DB 6 HOH A 109 709 55 HOH HOH . DB 6 HOH A 110 710 60 HOH HOH . DB 6 HOH A 111 711 101 HOH HOH . DB 6 HOH A 112 712 151 HOH HOH . DB 6 HOH A 113 713 127 HOH HOH . DB 6 HOH A 114 714 78 HOH HOH . DB 6 HOH A 115 715 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6RN . . . CB 5 13.973 57.609 6.566 0.84 35.57 ? C4 6RN 554 A 1 HETATM 2 C C5 6RN . . . CB 5 14.023 59.562 8.117 0.84 26.49 ? C5 6RN 554 A 1 HETATM 3 C C6 6RN . . . CB 5 15.429 59.942 7.709 0.84 23.41 ? C6 6RN 554 A 1 HETATM 4 N N1 6RN . . . CB 5 16.359 59.898 8.68 0.84 23.18 ? N1 6RN 554 A 1 HETATM 5 C C7 6RN . . . CB 5 15.734 60.288 6.4 0.84 23.15 ? C7 6RN 554 A 1 HETATM 6 C C8 6RN . . . CB 5 17.046 60.587 6.087 0.84 22.27 ? C8 6RN 554 A 1 HETATM 7 C C9 6RN . . . CB 5 18.013 60.534 7.06 0.84 17.03 ? C9 6RN 554 A 1 HETATM 8 C C10 6RN . . . CB 5 17.623 60.187 8.341 0.84 19.88 ? C10 6RN 554 A 1 HETATM 9 C C11 6RN . . . CB 5 13.166 57.936 5.48 0.84 35.07 ? C11 6RN 554 A 1 HETATM 10 C C12 6RN . . . CB 5 13.4 57.371 4.238 0.84 32.02 ? C12 6RN 554 A 1 HETATM 11 O O 6RN . . . CB 5 14.683 55.934 2.837 0.84 33.2 ? O 6RN 554 A 1 HETATM 12 C C1 6RN . . . CB 5 14.443 56.475 4.072 0.84 34.44 ? C1 6RN 554 A 1 HETATM 13 C C3 6RN . . . CB 5 15.015 56.705 6.39 0.84 27.2 ? C3 6RN 554 A 1 HETATM 14 C C2 6RN . . . CB 5 15.249 56.139 5.148 0.84 32.84 ? C2 6RN 554 A 1 HETATM 15 N N 6RN . . . CB 5 13.735 58.169 7.812 0.84 37.35 ? N 6RN 554 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #