data_5KCJ # _model_server_result.job_id CAtw8mXdw2HTYZt6y6LWdg _model_server_result.datetime_utc '2024-11-23 14:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5KCJ # _exptl.entry_id 5KCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KCJ _cell.length_a 54.41 _cell.length_b 89.73 _cell.length_c 124.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 171 n n N H GLY sing 172 n n N H2 GLY sing 173 n n CA C GLY sing 174 n n CA HA2 GLY sing 175 n n CA HA3 GLY sing 176 n n C O GLY doub 177 n n C OXT GLY sing 178 n n OXT HXT GLY sing 179 n n # _atom_sites.entry_id 5KCJ _atom_sites.fract_transf_matrix[1][1] 0.018379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 301 1 ACT ACT . D 4 GLU A 1 302 1 GLU GLU . E 5 GLY B 1 301 1 GLY GLY . F 6 6RM B 1 302 1 6RM 6RM . G 7 HOH A 1 401 225 HOH HOH . G 7 HOH A 2 402 15 HOH HOH . G 7 HOH A 3 403 6 HOH HOH . G 7 HOH A 4 404 216 HOH HOH . G 7 HOH A 5 405 122 HOH HOH . G 7 HOH A 6 406 100 HOH HOH . G 7 HOH A 7 407 89 HOH HOH . G 7 HOH A 8 408 38 HOH HOH . G 7 HOH A 9 409 159 HOH HOH . G 7 HOH A 10 410 93 HOH HOH . G 7 HOH A 11 411 131 HOH HOH . G 7 HOH A 12 412 3 HOH HOH . G 7 HOH A 13 413 152 HOH HOH . G 7 HOH A 14 414 58 HOH HOH . G 7 HOH A 15 415 75 HOH HOH . G 7 HOH A 16 416 82 HOH HOH . G 7 HOH A 17 417 37 HOH HOH . G 7 HOH A 18 418 77 HOH HOH . G 7 HOH A 19 419 61 HOH HOH . G 7 HOH A 20 420 232 HOH HOH . G 7 HOH A 21 421 84 HOH HOH . G 7 HOH A 22 422 68 HOH HOH . G 7 HOH A 23 423 69 HOH HOH . G 7 HOH A 24 424 135 HOH HOH . G 7 HOH A 25 425 18 HOH HOH . G 7 HOH A 26 426 236 HOH HOH . G 7 HOH A 27 427 52 HOH HOH . G 7 HOH A 28 428 29 HOH HOH . G 7 HOH A 29 429 72 HOH HOH . G 7 HOH A 30 430 155 HOH HOH . G 7 HOH A 31 431 215 HOH HOH . G 7 HOH A 32 432 1 HOH HOH . G 7 HOH A 33 433 50 HOH HOH . G 7 HOH A 34 434 24 HOH HOH . G 7 HOH A 35 435 238 HOH HOH . G 7 HOH A 36 436 157 HOH HOH . G 7 HOH A 37 437 33 HOH HOH . G 7 HOH A 38 438 99 HOH HOH . G 7 HOH A 39 439 119 HOH HOH . G 7 HOH A 40 440 91 HOH HOH . G 7 HOH A 41 441 10 HOH HOH . G 7 HOH A 42 442 199 HOH HOH . G 7 HOH A 43 443 207 HOH HOH . G 7 HOH A 44 444 190 HOH HOH . G 7 HOH A 45 445 71 HOH HOH . G 7 HOH A 46 446 267 HOH HOH . G 7 HOH A 47 447 94 HOH HOH . G 7 HOH A 48 448 154 HOH HOH . G 7 HOH A 49 449 4 HOH HOH . G 7 HOH A 50 450 35 HOH HOH . G 7 HOH A 51 451 245 HOH HOH . G 7 HOH A 52 452 241 HOH HOH . G 7 HOH A 53 453 151 HOH HOH . G 7 HOH A 54 454 92 HOH HOH . G 7 HOH A 55 455 51 HOH HOH . G 7 HOH A 56 456 56 HOH HOH . G 7 HOH A 57 457 193 HOH HOH . G 7 HOH A 58 458 30 HOH HOH . G 7 HOH A 59 459 239 HOH HOH . G 7 HOH A 60 460 16 HOH HOH . G 7 HOH A 61 461 104 HOH HOH . G 7 HOH A 62 462 209 HOH HOH . G 7 HOH A 63 463 185 HOH HOH . G 7 HOH A 64 464 204 HOH HOH . G 7 HOH A 65 465 172 HOH HOH . G 7 HOH A 66 466 224 HOH HOH . G 7 HOH A 67 467 109 HOH HOH . G 7 HOH A 68 468 39 HOH HOH . G 7 HOH A 69 469 27 HOH HOH . G 7 HOH A 70 470 169 HOH HOH . G 7 HOH A 71 471 138 HOH HOH . G 7 HOH A 72 472 191 HOH HOH . G 7 HOH A 73 473 234 HOH HOH . G 7 HOH A 74 474 23 HOH HOH . G 7 HOH A 75 475 26 HOH HOH . G 7 HOH A 76 476 95 HOH HOH . G 7 HOH A 77 477 2 HOH HOH . G 7 HOH A 78 478 143 HOH HOH . G 7 HOH A 79 479 148 HOH HOH . G 7 HOH A 80 480 160 HOH HOH . G 7 HOH A 81 481 105 HOH HOH . G 7 HOH A 82 482 106 HOH HOH . G 7 HOH A 83 483 247 HOH HOH . G 7 HOH A 84 484 229 HOH HOH . G 7 HOH A 85 485 218 HOH HOH . G 7 HOH A 86 486 14 HOH HOH . G 7 HOH A 87 487 252 HOH HOH . G 7 HOH A 88 488 179 HOH HOH . G 7 HOH A 89 489 28 HOH HOH . G 7 HOH A 90 490 187 HOH HOH . G 7 HOH A 91 491 44 HOH HOH . G 7 HOH A 92 492 178 HOH HOH . G 7 HOH A 93 493 74 HOH HOH . G 7 HOH A 94 494 7 HOH HOH . G 7 HOH A 95 495 110 HOH HOH . G 7 HOH A 96 496 118 HOH HOH . G 7 HOH A 97 497 115 HOH HOH . G 7 HOH A 98 498 67 HOH HOH . G 7 HOH A 99 499 40 HOH HOH . G 7 HOH A 100 500 210 HOH HOH . G 7 HOH A 101 501 173 HOH HOH . G 7 HOH A 102 502 120 HOH HOH . G 7 HOH A 103 503 192 HOH HOH . G 7 HOH A 104 504 78 HOH HOH . G 7 HOH A 105 505 181 HOH HOH . G 7 HOH A 106 506 85 HOH HOH . G 7 HOH A 107 507 201 HOH HOH . G 7 HOH A 108 508 126 HOH HOH . G 7 HOH A 109 509 219 HOH HOH . G 7 HOH A 110 510 265 HOH HOH . G 7 HOH A 111 511 48 HOH HOH . G 7 HOH A 112 512 174 HOH HOH . G 7 HOH A 113 513 163 HOH HOH . G 7 HOH A 114 514 65 HOH HOH . G 7 HOH A 115 515 208 HOH HOH . G 7 HOH A 116 516 73 HOH HOH . G 7 HOH A 117 517 182 HOH HOH . G 7 HOH A 118 518 195 HOH HOH . G 7 HOH A 119 519 123 HOH HOH . G 7 HOH A 120 520 223 HOH HOH . G 7 HOH A 121 521 164 HOH HOH . G 7 HOH A 122 522 203 HOH HOH . G 7 HOH A 123 523 127 HOH HOH . G 7 HOH A 124 524 101 HOH HOH . G 7 HOH A 125 525 233 HOH HOH . G 7 HOH A 126 526 79 HOH HOH . G 7 HOH A 127 527 150 HOH HOH . G 7 HOH A 128 528 8 HOH HOH . G 7 HOH A 129 529 149 HOH HOH . G 7 HOH A 130 530 21 HOH HOH . G 7 HOH A 131 531 263 HOH HOH . G 7 HOH A 132 532 183 HOH HOH . G 7 HOH A 133 533 248 HOH HOH . G 7 HOH A 134 534 262 HOH HOH . G 7 HOH A 135 535 86 HOH HOH . G 7 HOH A 136 536 266 HOH HOH . G 7 HOH A 137 537 240 HOH HOH . G 7 HOH A 138 538 25 HOH HOH . G 7 HOH A 139 539 108 HOH HOH . G 7 HOH A 140 540 194 HOH HOH . G 7 HOH A 141 541 113 HOH HOH . G 7 HOH A 142 542 170 HOH HOH . G 7 HOH A 143 543 176 HOH HOH . G 7 HOH A 144 544 206 HOH HOH . G 7 HOH A 145 545 226 HOH HOH . G 7 HOH A 146 546 128 HOH HOH . G 7 HOH A 147 547 47 HOH HOH . G 7 HOH A 148 548 220 HOH HOH . G 7 HOH A 149 549 264 HOH HOH . H 7 HOH B 1 401 19 HOH HOH . H 7 HOH B 2 402 97 HOH HOH . H 7 HOH B 3 403 221 HOH HOH . H 7 HOH B 4 404 43 HOH HOH . H 7 HOH B 5 405 111 HOH HOH . H 7 HOH B 6 406 11 HOH HOH . H 7 HOH B 7 407 9 HOH HOH . H 7 HOH B 8 408 144 HOH HOH . H 7 HOH B 9 409 243 HOH HOH . H 7 HOH B 10 410 36 HOH HOH . H 7 HOH B 11 411 114 HOH HOH . H 7 HOH B 12 412 136 HOH HOH . H 7 HOH B 13 413 13 HOH HOH . H 7 HOH B 14 414 130 HOH HOH . H 7 HOH B 15 415 141 HOH HOH . H 7 HOH B 16 416 64 HOH HOH . H 7 HOH B 17 417 242 HOH HOH . H 7 HOH B 18 418 250 HOH HOH . H 7 HOH B 19 419 76 HOH HOH . H 7 HOH B 20 420 46 HOH HOH . H 7 HOH B 21 421 42 HOH HOH . H 7 HOH B 22 422 49 HOH HOH . H 7 HOH B 23 423 200 HOH HOH . H 7 HOH B 24 424 253 HOH HOH . H 7 HOH B 25 425 54 HOH HOH . H 7 HOH B 26 426 41 HOH HOH . H 7 HOH B 27 427 17 HOH HOH . H 7 HOH B 28 428 5 HOH HOH . H 7 HOH B 29 429 205 HOH HOH . H 7 HOH B 30 430 268 HOH HOH . H 7 HOH B 31 431 129 HOH HOH . H 7 HOH B 32 432 57 HOH HOH . H 7 HOH B 33 433 212 HOH HOH . H 7 HOH B 34 434 90 HOH HOH . H 7 HOH B 35 435 156 HOH HOH . H 7 HOH B 36 436 96 HOH HOH . H 7 HOH B 37 437 162 HOH HOH . H 7 HOH B 38 438 196 HOH HOH . H 7 HOH B 39 439 165 HOH HOH . H 7 HOH B 40 440 261 HOH HOH . H 7 HOH B 41 441 246 HOH HOH . H 7 HOH B 42 442 147 HOH HOH . H 7 HOH B 43 443 132 HOH HOH . H 7 HOH B 44 444 12 HOH HOH . H 7 HOH B 45 445 134 HOH HOH . H 7 HOH B 46 446 258 HOH HOH . H 7 HOH B 47 447 197 HOH HOH . H 7 HOH B 48 448 145 HOH HOH . H 7 HOH B 49 449 83 HOH HOH . H 7 HOH B 50 450 112 HOH HOH . H 7 HOH B 51 451 107 HOH HOH . H 7 HOH B 52 452 167 HOH HOH . H 7 HOH B 53 453 168 HOH HOH . H 7 HOH B 54 454 22 HOH HOH . H 7 HOH B 55 455 125 HOH HOH . H 7 HOH B 56 456 31 HOH HOH . H 7 HOH B 57 457 257 HOH HOH . H 7 HOH B 58 458 62 HOH HOH . H 7 HOH B 59 459 249 HOH HOH . H 7 HOH B 60 460 142 HOH HOH . H 7 HOH B 61 461 32 HOH HOH . H 7 HOH B 62 462 139 HOH HOH . H 7 HOH B 63 463 102 HOH HOH . H 7 HOH B 64 464 177 HOH HOH . H 7 HOH B 65 465 146 HOH HOH . H 7 HOH B 66 466 186 HOH HOH . H 7 HOH B 67 467 213 HOH HOH . H 7 HOH B 68 468 214 HOH HOH . H 7 HOH B 69 469 60 HOH HOH . H 7 HOH B 70 470 98 HOH HOH . H 7 HOH B 71 471 63 HOH HOH . H 7 HOH B 72 472 59 HOH HOH . H 7 HOH B 73 473 124 HOH HOH . H 7 HOH B 74 474 103 HOH HOH . H 7 HOH B 75 475 254 HOH HOH . H 7 HOH B 76 476 228 HOH HOH . H 7 HOH B 77 477 137 HOH HOH . H 7 HOH B 78 478 198 HOH HOH . H 7 HOH B 79 479 88 HOH HOH . H 7 HOH B 80 480 87 HOH HOH . H 7 HOH B 81 481 20 HOH HOH . H 7 HOH B 82 482 55 HOH HOH . H 7 HOH B 83 483 251 HOH HOH . H 7 HOH B 84 484 116 HOH HOH . H 7 HOH B 85 485 45 HOH HOH . H 7 HOH B 86 486 202 HOH HOH . H 7 HOH B 87 487 184 HOH HOH . H 7 HOH B 88 488 217 HOH HOH . H 7 HOH B 89 489 230 HOH HOH . H 7 HOH B 90 490 180 HOH HOH . H 7 HOH B 91 491 66 HOH HOH . H 7 HOH B 92 492 140 HOH HOH . H 7 HOH B 93 493 244 HOH HOH . H 7 HOH B 94 494 166 HOH HOH . H 7 HOH B 95 495 53 HOH HOH . H 7 HOH B 96 496 211 HOH HOH . H 7 HOH B 97 497 188 HOH HOH . H 7 HOH B 98 498 158 HOH HOH . H 7 HOH B 99 499 34 HOH HOH . H 7 HOH B 100 500 260 HOH HOH . H 7 HOH B 101 501 235 HOH HOH . H 7 HOH B 102 502 80 HOH HOH . H 7 HOH B 103 503 133 HOH HOH . H 7 HOH B 104 504 117 HOH HOH . H 7 HOH B 105 505 256 HOH HOH . H 7 HOH B 106 506 81 HOH HOH . H 7 HOH B 107 507 227 HOH HOH . H 7 HOH B 108 508 237 HOH HOH . H 7 HOH B 109 509 153 HOH HOH . H 7 HOH B 110 510 255 HOH HOH . H 7 HOH B 111 511 70 HOH HOH . H 7 HOH B 112 512 231 HOH HOH . H 7 HOH B 113 513 171 HOH HOH . H 7 HOH B 114 514 121 HOH HOH . H 7 HOH B 115 515 222 HOH HOH . H 7 HOH B 116 516 161 HOH HOH . H 7 HOH B 117 517 175 HOH HOH . H 7 HOH B 118 518 259 HOH HOH . H 7 HOH B 119 519 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . E 5 9.101 -11.571 -38.428 1 22.06 ? N GLY 301 B 1 HETATM 2 C CA GLY . . . E 5 9.049 -10.585 -39.509 1 23.66 ? CA GLY 301 B 1 HETATM 3 C C GLY . . . E 5 8.543 -9.232 -39.014 1 19.92 ? C GLY 301 B 1 HETATM 4 O O GLY . . . E 5 8.522 -8.279 -39.809 1 25.8 ? O GLY 301 B 1 HETATM 5 O OXT GLY . . . E 5 8.233 -9.093 -37.813 1 30.36 ? OXT GLY 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #