data_5KCU # _model_server_result.job_id X4xvz7yaUMKorE_5n3iKLQ _model_server_result.datetime_utc '2025-07-04 18:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KCU # _exptl.entry_id 5KCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.604 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2R,4S)-N-ethyl-5,6-bis(4-hydroxyphenyl)-N-(naphthalen-2-yl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.83 _cell.angle_gamma 90 _cell.entry_id 5KCU _cell.length_a 55.482 _cell.length_b 82.222 _cell.length_c 58.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C30 H27 N O5 S' _chem_comp.formula_weight 513.604 _chem_comp.id OB8 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2R,4S)-N-ethyl-5,6-bis(4-hydroxyphenyl)-N-(naphthalen-2-yl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 OB8 doub 237 n y C28 C29 OB8 sing 238 n y C27 C24 OB8 sing 239 n y C29 C30 OB8 doub 240 n y C24 C23 OB8 doub 241 n y C24 C25 OB8 sing 242 n y C30 C25 OB8 sing 243 n y C23 C22 OB8 sing 244 n y C25 C26 OB8 doub 245 n y C22 C19 OB8 doub 246 n y C26 C19 OB8 sing 247 n y C19 N01 OB8 sing 248 n n O05 S01 OB8 doub 249 n n N01 S01 OB8 sing 250 n n N01 C20 OB8 sing 251 n n S01 O04 OB8 doub 252 n n S01 C17 OB8 sing 253 n n C20 C21 OB8 sing 254 n n C17 C18 OB8 sing 255 n n C17 C11 OB8 sing 256 n n C18 C09 OB8 sing 257 n n C11 O03 OB8 sing 258 n n C11 C07 OB8 sing 259 n n O03 C09 OB8 sing 260 n n C07 C05 OB8 sing 261 n n C07 C08 OB8 doub 262 n n C04 C05 OB8 doub 263 n y C04 C03 OB8 sing 264 n y C05 C06 OB8 sing 265 n y C03 C02 OB8 doub 266 n y C06 C01 OB8 doub 267 n y C09 C08 OB8 sing 268 n n C02 C01 OB8 sing 269 n y C02 O01 OB8 sing 270 n n C08 C10 OB8 sing 271 n n C10 C12 OB8 doub 272 n y C10 C16 OB8 sing 273 n y C12 C13 OB8 sing 274 n y C16 C15 OB8 doub 275 n y C13 C14 OB8 doub 276 n y C15 C14 OB8 sing 277 n y C14 O02 OB8 sing 278 n n C01 H1 OB8 sing 279 n n C03 H2 OB8 sing 280 n n C04 H3 OB8 sing 281 n n C06 H4 OB8 sing 282 n n O01 H5 OB8 sing 283 n n C09 H6 OB8 sing 284 n n C11 H7 OB8 sing 285 n n C12 H8 OB8 sing 286 n n C13 H9 OB8 sing 287 n n C15 H10 OB8 sing 288 n n C16 H11 OB8 sing 289 n n O02 H12 OB8 sing 290 n n C17 H13 OB8 sing 291 n n C18 H14 OB8 sing 292 n n C18 H15 OB8 sing 293 n n C20 H16 OB8 sing 294 n n C20 H17 OB8 sing 295 n n C21 H18 OB8 sing 296 n n C21 H19 OB8 sing 297 n n C21 H20 OB8 sing 298 n n C22 H21 OB8 sing 299 n n C23 H22 OB8 sing 300 n n C26 H23 OB8 sing 301 n n C27 H24 OB8 sing 302 n n C28 H25 OB8 sing 303 n n C29 H26 OB8 sing 304 n n C30 H27 OB8 sing 305 n n # _atom_sites.entry_id 5KCU _atom_sites.fract_transf_matrix[1][1] 0.018024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OB8 A 1 601 1 OB8 OB8 . F 3 OB8 B 1 601 1 OB8 OB8 . G 4 HOH A 1 701 96 HOH HOH . G 4 HOH A 2 702 85 HOH HOH . G 4 HOH A 3 703 73 HOH HOH . G 4 HOH A 4 704 84 HOH HOH . G 4 HOH A 5 705 74 HOH HOH . G 4 HOH A 6 706 25 HOH HOH . G 4 HOH A 7 707 87 HOH HOH . G 4 HOH A 8 708 64 HOH HOH . G 4 HOH A 9 709 21 HOH HOH . G 4 HOH A 10 710 56 HOH HOH . G 4 HOH A 11 711 45 HOH HOH . G 4 HOH A 12 712 14 HOH HOH . G 4 HOH A 13 713 9 HOH HOH . G 4 HOH A 14 714 6 HOH HOH . G 4 HOH A 15 715 91 HOH HOH . G 4 HOH A 16 716 53 HOH HOH . G 4 HOH A 17 717 24 HOH HOH . G 4 HOH A 18 718 12 HOH HOH . G 4 HOH A 19 719 22 HOH HOH . G 4 HOH A 20 720 100 HOH HOH . G 4 HOH A 21 721 89 HOH HOH . G 4 HOH A 22 722 28 HOH HOH . G 4 HOH A 23 723 4 HOH HOH . G 4 HOH A 24 724 58 HOH HOH . G 4 HOH A 25 725 34 HOH HOH . G 4 HOH A 26 726 102 HOH HOH . G 4 HOH A 27 727 16 HOH HOH . G 4 HOH A 28 728 47 HOH HOH . G 4 HOH A 29 729 5 HOH HOH . G 4 HOH A 30 730 35 HOH HOH . G 4 HOH A 31 731 7 HOH HOH . G 4 HOH A 32 732 1 HOH HOH . G 4 HOH A 33 733 77 HOH HOH . G 4 HOH A 34 734 55 HOH HOH . G 4 HOH A 35 735 61 HOH HOH . G 4 HOH A 36 736 27 HOH HOH . G 4 HOH A 37 737 65 HOH HOH . G 4 HOH A 38 738 46 HOH HOH . G 4 HOH A 39 739 37 HOH HOH . G 4 HOH A 40 740 31 HOH HOH . G 4 HOH A 41 741 71 HOH HOH . G 4 HOH A 42 742 8 HOH HOH . G 4 HOH A 43 743 66 HOH HOH . G 4 HOH A 44 744 82 HOH HOH . G 4 HOH A 45 745 42 HOH HOH . G 4 HOH A 46 746 94 HOH HOH . G 4 HOH A 47 747 60 HOH HOH . G 4 HOH A 48 748 88 HOH HOH . G 4 HOH A 49 749 59 HOH HOH . G 4 HOH A 50 750 83 HOH HOH . G 4 HOH A 51 751 15 HOH HOH . H 4 HOH B 1 701 72 HOH HOH . H 4 HOH B 2 702 62 HOH HOH . H 4 HOH B 3 703 20 HOH HOH . H 4 HOH B 4 704 68 HOH HOH . H 4 HOH B 5 705 39 HOH HOH . H 4 HOH B 6 706 36 HOH HOH . H 4 HOH B 7 707 54 HOH HOH . H 4 HOH B 8 708 50 HOH HOH . H 4 HOH B 9 709 3 HOH HOH . H 4 HOH B 10 710 38 HOH HOH . H 4 HOH B 11 711 40 HOH HOH . H 4 HOH B 12 712 32 HOH HOH . H 4 HOH B 13 713 30 HOH HOH . H 4 HOH B 14 714 18 HOH HOH . H 4 HOH B 15 715 2 HOH HOH . H 4 HOH B 16 716 13 HOH HOH . H 4 HOH B 17 717 10 HOH HOH . H 4 HOH B 18 718 98 HOH HOH . H 4 HOH B 19 719 19 HOH HOH . H 4 HOH B 20 720 26 HOH HOH . H 4 HOH B 21 721 11 HOH HOH . H 4 HOH B 22 722 69 HOH HOH . H 4 HOH B 23 723 104 HOH HOH . H 4 HOH B 24 724 29 HOH HOH . H 4 HOH B 25 725 48 HOH HOH . H 4 HOH B 26 726 41 HOH HOH . H 4 HOH B 27 727 67 HOH HOH . H 4 HOH B 28 728 52 HOH HOH . H 4 HOH B 29 729 92 HOH HOH . H 4 HOH B 30 730 49 HOH HOH . H 4 HOH B 31 731 57 HOH HOH . H 4 HOH B 32 732 51 HOH HOH . H 4 HOH B 33 733 33 HOH HOH . H 4 HOH B 34 734 75 HOH HOH . H 4 HOH B 35 735 23 HOH HOH . H 4 HOH B 36 736 44 HOH HOH . H 4 HOH B 37 737 90 HOH HOH . H 4 HOH B 38 738 86 HOH HOH . H 4 HOH B 39 739 101 HOH HOH . H 4 HOH B 40 740 93 HOH HOH . H 4 HOH B 41 741 63 HOH HOH . H 4 HOH B 42 742 97 HOH HOH . H 4 HOH B 43 743 78 HOH HOH . H 4 HOH B 44 744 43 HOH HOH . H 4 HOH B 45 745 76 HOH HOH . H 4 HOH B 46 746 79 HOH HOH . H 4 HOH B 47 747 17 HOH HOH . I 4 HOH C 1 701 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 OB8 . . . F 3 -12.009 -21.182 -34.612 0.86 40.02 ? C01 OB8 601 B 1 HETATM 2 C C02 OB8 . . . F 3 -13.108 -21.275 -35.356 0.86 41.4 ? C02 OB8 601 B 1 HETATM 3 C C03 OB8 . . . F 3 -13.859 -20.201 -35.452 0.86 38.34 ? C03 OB8 601 B 1 HETATM 4 C C04 OB8 . . . F 3 -13.528 -19.074 -34.844 0.86 40.21 ? C04 OB8 601 B 1 HETATM 5 C C05 OB8 . . . F 3 -12.422 -18.948 -34.115 0.86 38.04 ? C05 OB8 601 B 1 HETATM 6 C C06 OB8 . . . F 3 -11.691 -20.053 -34.005 0.86 38.12 ? C06 OB8 601 B 1 HETATM 7 O O01 OB8 . . . F 3 -13.45 -22.401 -35.979 0.86 44.71 ? O01 OB8 601 B 1 HETATM 8 C C07 OB8 . . . F 3 -12.148 -17.798 -33.485 0.86 37.88 ? C07 OB8 601 B 1 HETATM 9 C C08 OB8 . . . F 3 -11.065 -17.028 -33.264 0.86 38.19 ? C08 OB8 601 B 1 HETATM 10 C C09 OB8 . . . F 3 -11.641 -15.923 -32.392 0.86 41.2 ? C09 OB8 601 B 1 HETATM 11 C C10 OB8 . . . F 3 -9.765 -17.073 -33.64 0.86 43.55 ? C10 OB8 601 B 1 HETATM 12 C C11 OB8 . . . F 3 -13.266 -17.091 -32.746 0.86 39.22 ? C11 OB8 601 B 1 HETATM 13 C C12 OB8 . . . F 3 -9.374 -17.508 -34.833 0.86 41.22 ? C12 OB8 601 B 1 HETATM 14 C C13 OB8 . . . F 3 -8.12 -17.543 -35.248 0.86 36.75 ? C13 OB8 601 B 1 HETATM 15 C C14 OB8 . . . F 3 -7.139 -17.143 -34.475 0.86 39.74 ? C14 OB8 601 B 1 HETATM 16 C C15 OB8 . . . F 3 -7.482 -16.706 -33.273 0.86 38.49 ? C15 OB8 601 B 1 HETATM 17 C C16 OB8 . . . F 3 -8.756 -16.666 -32.873 0.86 41.22 ? C16 OB8 601 B 1 HETATM 18 O O02 OB8 . . . F 3 -5.875 -17.195 -34.878 0.86 37.43 ? O02 OB8 601 B 1 HETATM 19 C C17 OB8 . . . F 3 -13.068 -17.456 -31.293 0.86 39.8 ? C17 OB8 601 B 1 HETATM 20 C C18 OB8 . . . F 3 -11.961 -16.43 -30.991 0.86 39.22 ? C18 OB8 601 B 1 HETATM 21 S S01 OB8 . . . F 3 -14.554 -17.454 -30.209 0.86 48.01 ? S01 OB8 601 B 1 HETATM 22 O O03 OB8 . . . F 3 -12.922 -15.756 -32.822 0.86 41.07 ? O03 OB8 601 B 1 HETATM 23 N N01 OB8 . . . F 3 -15.519 -18.711 -30.669 0.86 78.5 ? N01 OB8 601 B 1 HETATM 24 O O04 OB8 . . . F 3 -14.93 -16.131 -30.482 0.86 42.98 ? O04 OB8 601 B 1 HETATM 25 O O05 OB8 . . . F 3 -13.761 -17.762 -29.119 0.86 58.29 ? O05 OB8 601 B 1 HETATM 26 C C19 OB8 . . . F 3 -16.75 -18.675 -30.995 0.86 83.74 ? C19 OB8 601 B 1 HETATM 27 C C20 OB8 . . . F 3 -14.916 -20.069 -30.594 0.86 80.22 ? C20 OB8 601 B 1 HETATM 28 C C21 OB8 . . . F 3 -13.689 -20.236 -31.489 0.86 80.94 ? C21 OB8 601 B 1 HETATM 29 C C22 OB8 . . . F 3 -17.631 -17.962 -30.271 0.86 85.55 ? C22 OB8 601 B 1 HETATM 30 C C23 OB8 . . . F 3 -18.935 -17.928 -30.545 0.86 85.38 ? C23 OB8 601 B 1 HETATM 31 C C24 OB8 . . . F 3 -19.431 -18.632 -31.565 0.86 86.01 ? C24 OB8 601 B 1 HETATM 32 C C25 OB8 . . . F 3 -18.596 -19.368 -32.3 0.86 87.13 ? C25 OB8 601 B 1 HETATM 33 C C26 OB8 . . . F 3 -17.3 -19.379 -31.997 0.86 86.36 ? C26 OB8 601 B 1 HETATM 34 C C27 OB8 . . . F 3 -20.73 -18.618 -31.86 0.86 86.63 ? C27 OB8 601 B 1 HETATM 35 C C28 OB8 . . . F 3 -21.217 -19.335 -32.892 0.86 88.33 ? C28 OB8 601 B 1 HETATM 36 C C29 OB8 . . . F 3 -20.379 -20.085 -33.627 0.86 88.51 ? C29 OB8 601 B 1 HETATM 37 C C30 OB8 . . . F 3 -19.071 -20.089 -33.327 0.86 87.42 ? C30 OB8 601 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #